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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pftools">Debian Med / pftools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pftools/-/commit/058dff3ae1d70852cffbb06c3c713ade091a9a29">058dff3a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-17T21:47:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pftools/-/commit/498481569b9d46d3e53b23acd329fdaf78875de3">49848156</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-17T21:53:26+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix name for README
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
debian/docs
</a>
</li>
<li class="file-stats">
<a href="#cb6143ba00feebe265616d67002293ba1b32cc31">
debian/patches/destdir_for_examples.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32">
<a href="https://salsa.debian.org/med-team/pftools/-/compare/4aac978b4166030668477d9b5d95b91a9658370e...498481569b9d46d3e53b23acd329fdaf78875de3#3a5a7cdb36d3ebf45777d0bc382dd46aa7a18f32"><strong>debian/docs</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">debian/README.test</span>
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<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">debian/tests/run-unit-test</span>
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3
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<td class="diff-line-num new_line old" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">README</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">README<span class="idiff left right">*</span></span>
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4
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4
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">doc/profile.txt</span></pre>
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</li>
<li id="cb6143ba00feebe265616d67002293ba1b32cc31">
<a href="https://salsa.debian.org/med-team/pftools/-/compare/4aac978b4166030668477d9b5d95b91a9658370e...498481569b9d46d3e53b23acd329fdaf78875de3#cb6143ba00feebe265616d67002293ba1b32cc31"><strong>debian/patches/destdir_for_examples.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,11 +16,11 @@ Description: take DESTDIR into account, because the built-in cmake function inst</td>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
16
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "FILE(RENAME ${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh.cmake ${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh)")</span></span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "FILE(RENAME ${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl.cmake ${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl)")</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "FILE(RENAME ${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl.cmake ${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl)")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find <span class="idiff left right">$</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec chmod a+rx {} \;)")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find <span class="idiff left right">$</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec sed -i \"s|@DATA_DIR@/Matrices|${CMAKE_INSTALL_PREFIX}/share/data/cmp|; s|@PERL_SCRIPT_DIR@|${CMAKE_INSTALL_PREFIX}/bin|\" {} \;)")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find <span class="idiff left right">$</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec perl -i -pe \"s|.<TARGET_FILE:(.+?)>|${CMAKE_INSTALL_PREFIX}/bin/$1|\" {} \;)")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh.cmake $</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh)")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh.cmake $</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh)")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl.cmake $</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl)")</span></span>
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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl.cmake $</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl)")</span></span>
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<td class="diff-line-num new old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find <span class="idiff left right">\$ENV</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec chmod a+rx {} \;)")</span></span>
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<td class="diff-line-num new old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find <span class="idiff left right">\$ENV</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec sed -i \"s|@DATA_DIR@/Matrices|${CMAKE_INSTALL_PREFIX}/share/data/cmp|; s|@PERL_SCRIPT_DIR@|${CMAKE_INSTALL_PREFIX}/bin|\" {} \;)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find <span class="idiff left right">\$ENV</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec perl -i -pe \"s|.<TARGET_FILE:(.+?)>|${CMAKE_INSTALL_PREFIX}/bin/$1|\" {} \;)")</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">\$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh.cmake \$ENV</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh)")</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">\$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh.cmake \$ENV</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">\$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl.cmake \$ENV</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl)")</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME <span class="idiff left right">\$ENV{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl.cmake \$ENV</span>{DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl)")</span></span>
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26
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"> </span></pre>
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