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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ghmm">Debian Med / ghmm</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ghmm/-/commit/ac67eeccd5d7f5e61ce90c4779047b040ced4f0e">ac67eecc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-17T11:19:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop `--enable-gsl` from d/rules
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ghmm/-/commit/673e2fdea718660f91ad0d2be44702ba3b48d39e">673e2fde</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-17T11:28:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ghmm/-/commit/a62b232125de9ed0e44c8323f5ecacbe0315746c">a62b2321</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-17T11:28:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing newline
</pre>
</li>
</ul>
<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ghmm/-/compare/b77e45cace65ca45dcc1059d1a8e47b14caff713...a62b232125de9ed0e44c8323f5ecacbe0315746c#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,8 +3,6 @@ ghmm (0.9~rc3-3) UNRELEASED; urgency=medium</td>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Use 2to3 to port to Python3</span>
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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Closes: #936609</span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Use secure URI in debian/watch.</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> * Set upstream metadata fields: Archive.</span>
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<td class="diff-line-num old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
10
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * Add files missing in installation</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,24 +11,14 @@ ghmm (0.9~rc3-3) UNRELEASED; urgency=medium</td>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Add Upstream-Contact</span>
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<td class="diff-line-num old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * debian/copyright: use spaces rather than tabs to start continuation</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> lines.</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> TODO:</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> gcc -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -DDTD_LOC=\"/usr/share/ghmm/ghmm.dtd.1.0\" -g -O2 "-fdebug-prefix-map=/build/ghmm-0.9~rc3=." -fstack-protector-strong -Wformat -Werror=format-security -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/libxml2 -c randvar.c -fPIC -DPIC -o .libs/randvar.o</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> In file included from /usr/include/x86_64-linux-gnu/clapack.h:4,</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> from matrixop.c:48:</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> /usr/include/x86_64-linux-gnu/cblas.h:5:9: error: nested redefinition of 'enum CBLAS_ORDER'</span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> 5 | enum CBLAS_ORDER {CblasRowMajor=101, CblasColMajor=102 };</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> | ^~~~~~~~~~~</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> /usr/include/x86_64-linux-gnu/cblas.h:5:9: error: redeclaration of 'enum CBLAS_ORDER'</span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> In file included from /usr/include/gsl/gsl_blas_types.h:28,</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> from /usr/include/gsl/gsl_blas.h:29,</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> from /usr/include/gsl/gsl_linalg.h:30,</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> from matrixop.c:44:</span>
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28
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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29
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * debhelper-compat 13 (routine-update)</span>
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30
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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31
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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32
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> * No tab in license text (routine-update)</span>
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33
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> * Set upstream metadata fields: Repository.</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> * Drop `--enable-gsl` from d/rules (thanks for the hint to Frederic-Emmanuel</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> PICCA)</span>
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34
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 11 Sep 2019 14:25:34 +0200</span>
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36
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/ghmm/-/compare/b77e45cace65ca45dcc1059d1a8e47b14caff713...a62b232125de9ed0e44c8323f5ecacbe0315746c#555c85016bd79aa8bbb523506af81b69d9c69534"><strong>debian/patches/2to3.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -831,7 +831,7 @@ Last-Update: Wed, 11 Sep 2019 14:25:34 +0200</td>
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831
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831
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<pre style="margin: 0;"> <span id="LC831" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/ghmmwrapper/ghmm.py</span></span>
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832
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832
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<pre style="margin: 0;"> <span id="LC832" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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833
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833
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<pre style="margin: 0;"> <span id="LC833" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python2.3</span></span>
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834
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<pre style="margin: 0;">-<span id="LC834" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3<span class="idiff left right">2.3</span></span></span>
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834
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<pre style="margin: 0;">+<span id="LC834" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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835
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835
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<pre style="margin: 0;"> <span id="LC835" class="line" lang="diff"> ################################################################################</span>
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836
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836
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<pre style="margin: 0;"> <span id="LC836" class="line" lang="diff"> #</span>
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837
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837
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<pre style="margin: 0;"> <span id="LC837" class="line" lang="diff"> # This file is part of the General Hidden Markov Model Library,</span>
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<a href="https://salsa.debian.org/med-team/ghmm/-/compare/b77e45cace65ca45dcc1059d1a8e47b14caff713...a62b232125de9ed0e44c8323f5ecacbe0315746c#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed</td>
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dh $@</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dh_auto_configure -- --enable-<span class="idiff left right">gsl --enable-</span>atlas</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dh_auto_configure -- --enable-atlas</span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">override_dh_install:</span>
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15
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dh_install</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,4 +41,4 @@ override_dh_auto_clean:</td>
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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43
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> $(MAKE) --directory=tests</span>
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<td class="diff-line-num old old_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext">endif</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">endif</span></pre>
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