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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/pftools">Debian Med / pftools</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/pftools/-/commit/4aac978b4166030668477d9b5d95b91a9658370e">4aac978b</a></strong>
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<span>by Andreas Tille</span>
<i>at 2020-12-17T17:36:35+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">take DESTDIR into account, because the built-in cmake function install() does
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#cb6143ba00feebe265616d67002293ba1b32cc31">
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+
debian/patches/destdir_for_examples.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="cb6143ba00feebe265616d67002293ba1b32cc31">
<a href="https://salsa.debian.org/med-team/pftools/-/commit/4aac978b4166030668477d9b5d95b91a9658370e#cb6143ba00feebe265616d67002293ba1b32cc31"><strong>debian/patches/destdir_for_examples.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Juhani Numminen <juhaninumminen0@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Last-Change: Thu, 17 Dec 2020 18:04:26 +0200</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Origin: https://lists.debian.org/debian-mentors/2020/12/msg00132.html</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Description: take DESTDIR into account, because the built-in cmake function install() does</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">--- a/tests/CMakeLists.txt</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -46,11 +46,11 @@</span> INSTALL(DIRECTORY examples/</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> DESTINATION share/examples</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> PATTERN "CMakeLists.txt" EXCLUDE</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> )</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "EXECUTE_PROCESS(COMMAND find ${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec chmod a+rx {} \;)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "EXECUTE_PROCESS(COMMAND find ${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec sed -i \"s|@DATA_DIR@/Matrices|${CMAKE_INSTALL_PREFIX}/share/data/cmp|; s|@PERL_SCRIPT_DIR@|${CMAKE_INSTALL_PREFIX}/bin|\" {} \;)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "EXECUTE_PROCESS(COMMAND find ${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec perl -i -pe \"s|.<TARGET_FILE:(.+?)>|${CMAKE_INSTALL_PREFIX}/bin/$1|\" {} \;)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "FILE(RENAME ${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh.cmake ${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "FILE(RENAME ${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh.cmake ${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "FILE(RENAME ${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl.cmake ${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-INSTALL(CODE "FILE(RENAME ${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl.cmake ${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec chmod a+rx {} \;)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec sed -i \"s|@DATA_DIR@/Matrices|${CMAKE_INSTALL_PREFIX}/share/data/cmp|; s|@PERL_SCRIPT_DIR@|${CMAKE_INSTALL_PREFIX}/bin|\" {} \;)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "EXECUTE_PROCESS(COMMAND find ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/ -type f -name \*.cmake -exec perl -i -pe \"s|.<TARGET_FILE:(.+?)>|${CMAKE_INSTALL_PREFIX}/bin/$1|\" {} \;)")</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh.cmake ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V2.sh)")</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh.cmake ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_V3.sh)")</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl.cmake ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_scan_search.pl)")</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+INSTALL(CODE "FILE(RENAME ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl.cmake ${DESTDIR}${CMAKE_INSTALL_PREFIX}/share/examples/test_pfsearchV3_iupac.pl)")</span></span>
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span></pre>
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<a href="https://salsa.debian.org/med-team/pftools/-/commit/4aac978b4166030668477d9b5d95b91a9658370e#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">spelling.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># fix_perl_interpreter.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">0001-Harmonize-bin-env-path-Cleaning.patch</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">destdir_for_examples.patch</span></pre>
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