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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e8c4ba9ccb7d1260847d4c4386f1f76195edadfb">e8c4ba9c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-20T13:45:51+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/e8c4ba9ccb7d1260847d4c4386f1f76195edadfb#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 20 Dec 2020 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Sun, 20 Dec 2020 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> dcmtk | 200 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 104 | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 56 | {covid-19,laboratory,practice,oncology,his,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">6</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">4</span> | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | <span class="idiff left right">30</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">0</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 4<span class="idiff left right">7</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> htsjdk | 3<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | <span class="idiff left right">29</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicom3tools | 2<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 2<span class="idiff left right">1</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> gnumed-server | 20 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 19 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> ngs-sdk | 18 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 18 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> odin | 18 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> invesalius | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> dcm2niix | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> ngs-sdk | 16 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> dcm2niix | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> adun.app | 14 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> nifticlib | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> dicomnifti | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> minc-tools | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> mia | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> nifticlib | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> mia | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> plastimatch | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> ea-utils | 10 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> king | 10 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> librg-utils-perl | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> melting | 10 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 10 | {bio-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> <span class="idiff left right">obitools | 10 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> pixelmed | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> vtk-dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> biosig | 9 | {imaging,physics} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> fastlink | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> <span class="idiff left right">obitools | 9 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 9 | {bio-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> orthanc-webviewer | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> bamkit | 8 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> treeview | 8 | {bio,bio-phylogeny} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,6 +44,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> libpal-java | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> nifti2dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> orthanc-dicomweb | 7 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> prime-phylo | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,7 +59,6 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> libncl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> mipe | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> nifti2dicom | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> phybin | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> phyutility | 6 | {cloud,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -68,6 +68,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> zalign | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> busco | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -85,10 +86,10 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> runcircos-gui | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> spread-phy | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> stacks | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> brig | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> busco | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> embassy-domainatrix | 4 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,9 +109,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> spaced | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> sprai | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> surankco | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> tracetuner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> biomaj3-cli | 3 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> biomaj3-daemon | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"> blasr | 3 | {bio,bio-ngs} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -128,6 +127,7 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> rtax | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> tracetuner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -221,8 +221,8 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> pique | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> pplacer | 0 | {bio-phylogeny,bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> python-bcbio-gff | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -241,11 +241,12 @@ Last-Update: Sun, 20 Dec 2020 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> varscan | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> vienna-rna | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> yanagiba | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC247" class="line" lang="plaintext"> orthanc-gdcm | -1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC248" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> svim | -1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="plaintext">(27<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext">(27<span class="idiff left right">8</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"></span></pre>
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