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GitLab
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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/76f4e72d0ce70dfcb41d6bab203bcaf74b10fe6d">76f4e72d</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-22T17:56:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/d6d05ec174bf50c7b86b21b346f7180a5be31e28">d6d05ec1</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-22T17:56:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.4.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/95fbccb4c65e6dd97830b4f45b73de11db9c3aa1">95fbccb4</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-22T18:02:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.4.0+dfsg'

Update to upstream version '3.4.0+dfsg'
with Debian dir 8cb34729c78c01a752d94b4a17208a9970eb6c69</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/dfd3b1f04366fa321621290636f7f9762edbf07e">dfd3b1f0</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-22T18:02:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/5acca05885b489f592e9486117fa1e3a7e81ef3a">5acca058</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-22T18:02:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/f842a4b02f088a5d9a94632827a2208084c1feb3">f842a4b0</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-22T18:02:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.

Changes-By: lintian-brush
Fixes: lintian: homepage-field-uses-insecure-uri
See-also: https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/c877422689498d55f3b548e2c13024cb2967e03d">c8774226</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-22T18:02:37+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.

Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/f6b3fb3b199d4dd23b41246b6b5b62ff739d9acd">f6b3fb3b</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2020-12-23T22:24:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream adopted quite a bit.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
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<a href="#05a721ebe3ba0754116825ed1359ff1785f4bbac">
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+
.dockerignore
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<li class="file-stats">
<a href="#6bfa550d4878e4d0c1228749100ea65cb7224e38">
<span class="new-file">
+
.github/workflows/examples_test.yml
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<li class="file-stats">
<a href="#b8b60281d816cd7ac1e6eb63df571efbb8625151">
<span class="new-file">
+
.github/workflows/execute_nightly_tests.yml
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<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<a href="#4a09ec95f4c4abe338b8c88fd0d9a11d28595e76">
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Dockerfile-cgp-file
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<li class="file-stats">
<a href="#100ec2c01efdc34e2e09a37c064c9db51cfb1468">
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Dockerfile-cgp-mysql
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<a href="#a15a89d3baab76a22a6f629be80b662e1de3d2b0">
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Dockerfile-cgp-sqlite
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#84e35ca35d6b8e868532c59f12378a63bd6efa3d">
auxprogs/Makefile
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<a href="#3ff7aa93d527572593aa9d194b680d85a8c01da7">
auxprogs/aln2wig/Makefile
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<a href="#17bd560ea1fb1dcf713cead95d3f15e6c5a50d9f">
auxprogs/bam2hints/Makefile
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<a href="#ce64319b90f1192ec3897ebb0ef99b9c5a2caa7e">
auxprogs/bam2wig/Makefile
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auxprogs/bam2wig/README.md
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<a href="#0de9c2470f48eb27ef3ee615e630d7190bba7bd2">
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auxprogs/bam2wig/README.txt
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<li class="file-stats">
<a href="#028a4a58a7137b1a8770079486c26367a0378a07">
auxprogs/bam2wig/bam2wig.c
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<a href="#032d438b2adb9ead01a1d28c77410b66231802b6">
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auxprogs/checkTargetSortedness/Makefile
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<li class="file-stats">
<a href="#88a704b00e9010bcf958d8341f9a13ebff4eec4f">
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auxprogs/checkTargetSortedness/checkTargetSortedness.c
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<a href="#a7deae548a096fca3a44383f85d8784f0d3e99eb">
auxprogs/compileSpliceCands/Makefile
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<a href="#546c2ad233a361c2a67199262cbafa4194f6c7f5">
auxprogs/compileSpliceCands/compileSpliceCands.c
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<li class="file-stats">
<a href="#d479517b527d0ed7b140f5a069b1885e3fdaa702">
auxprogs/filterBam/src/Makefile
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<li class="file-stats">
<a href="#d60b2b54fd3bee17bd86a2c3605a66b2cc56e642">
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auxprogs/homGeneMapping/Dockerfile
</span>
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<li class="file-stats">
<a href="#c30938c793ec27f793702fa98ea71af1292a472c">
auxprogs/homGeneMapping/Makefile
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<li class="file-stats">
<a href="#d3b3dd73f838c1806960f5bc21e3efc250d8b8ed">
auxprogs/homGeneMapping/README.TXT
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<a href="#59d0da10c9f9784a4eb3292cf8fc3c39480eb319">
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auxprogs/homGeneMapping/examples/make.doc
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<a href="#427f76d4101073bd071eaeb076e7618929786f17">
auxprogs/homGeneMapping/include/genome.hh
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<li class="file-stats">
<a href="#24d0a6d53d2e5103622c45f2ed14415574e28454">
auxprogs/homGeneMapping/src/Makefile
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<li class="file-stats">
<a href="#08f089219f951b9078ad4ed3d64109ce0c626f76">
auxprogs/homGeneMapping/src/genome.cc
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</ul>
<h5>The diff was not included because it is too large.</h5>

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