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<h3>
Michael R. Crusoe pushed to branch debian/experimental
at <a href="https://salsa.debian.org/med-team/vg">Debian Med / vg</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/ae1aba723d8fc70390832a46c9cd95a99f0b9a0d">ae1aba72</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-12T06:33:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/281054e9e64736096e8558a3b74846766226d6e4">281054e9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-12T06:33:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.29.0+ds</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/8b511b589e83d487abaf4179f377e3aaba9a4294">8b511b58</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-12T06:36:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.29.0+ds'
Update to upstream version '1.29.0+ds'
with Debian dir e25dff67b5c5cc9f9f001cf91b215b938cd5c0c7</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/f796dd934ea83f46a6eb85ca9a42577c1810c5b9">f796dd93</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-12T06:36:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/e88e8a43e3be987ed3e5fb8ed0adce84d7fe8fa3">e88e8a43</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2020-12-13T08:51:55+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/eeabb8dd87452a507c0b8fe3e55c4fddba76c800">eeabb8dd</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-14T21:48:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh use_packaged_vcflib
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/5e88a8bde9f6671034cd0c2db3573027851f7aad">5e88a8bd</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-14T21:50:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh use_packaged_libdeflate
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/b7c965a1f3dea98091fadcd018452fe2a0111f7a">b7c965a1</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-14T21:54:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh use_packaged_htslib
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/4140bfe5b43bb4d91346ab0913217edeb5b2aa3f">4140bfe5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-12-14T22:22:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">find Variant.h in /usr/include/vcflib
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/ccec324e91cf78add3a4f0f23ba7133c248d47d0">ccec324e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-12-14T22:27:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update debian/clean
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/79113083104b26ba3273076e9b592421b959ddcc">79113083</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T11:46:04+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/f2506f305f539d94ea19a2b8e1f1ac20282ac3f3">f2506f30</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T17:04:54+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: ads build time test dependencies
In addition to the existing toolset, the test suite executes the
programs bgzip, from tabix, and xxd, so adding them as build time
dependencies.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/d2b9c5863f904a2c5cc5fc8cb41561b7c53ca9ac">d2b9c586</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T17:08:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: fix calls to vg SIMDe variants
Probably due to being located in the wrong path, only the first
variant caught by the script was tested. This rewrap also makes sure
the script uses absolute paths as much as possible, and does not
change working directory too much.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/8af10a425bedb0da6fa2c1a4692c36690b18fe32">8af10a42</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T18:40:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/c67c08fda2ce848fca9ad2c0782629895b697180">c67c08fd</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T19:11:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: disable AVX variant as one test fails
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/fae5d0c46db8c3b0c68a4064e787c616a03b3b5b">fae5d0c4</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T19:34:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated false positives of typos
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/97a54eedbb30a6a037fd86f40540158e2f5bfa95">97a54eed</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T19:35:27+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fixed new typo in binaries
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/3b4f5c252e09fffe5579f3bb3e5d30123434c33d">3b4f5c25</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T20:37:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">provided a "whatis" description to vg manual
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/4ce6bfbb025e837059479348a5f6959b96557943">4ce6bfbb</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T20:49:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: abort test if vg-plain fails
Other variants may not be capable of executing on the buildd, so
it is better to let them pass in a first time, or check for CPU
extensions available on the buildd on a second time.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/7877c47ef9f932cc1abb3499747ab00a62edda9d">7877c47e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T21:10:28+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: reorder spp_timer.h
The initial possition in the copyright file triggered a lintian
warning globbing-patterns-out-of-order.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/4e6ad9e3ab48680121eddfa286a422429b781176">4e6ad9e3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T21:11:42+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Make sure the libbz2 is dynamically linked.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/1577a2a0f698b5ec0948ca0a3a2fcfcb10e5bf82">1577a2a0</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-16T22:12:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">updated changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/1bbbb30c75dd711e0ca67b9f1069c12bc613e2de">1bbbb30c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-17T18:29:29+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">override missing source on benchmarks.js
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/62102d4c68bb72c8f1f80d511c2557f98aa476f9">62102d4c</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-17T19:45:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add d3.js sources
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/4979662f7023dc9347700d32b44ef0a20bff9768">4979662f</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-17T19:46:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/control: replace librdf-dev by librdf0-dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/2054d67edbe2664a7aa17b5a5936ffd1ac379b89">2054d67e</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-17T20:51:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix malformed override
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/eae5cf79562fbdb08986727215df986a19a5c2f3">eae5cf79</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-17T20:52:27+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">back to UNRELEASED
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/97809ea186f28f7d47d66839a9844a30b5599967">97809ea1</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2020-12-17T21:54:50+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vg/-/commit/260d0ca5090013f9cd095ae6f8a9e6dc3d50302d">260d0ca5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-12-26T14:20:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Experimental rebuild with libsimde-dev 0.7.0~rc-1
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
.gitmodules
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#cd0579ec0e52295ce3ba27a3536af98da3ad6f16">
Brewfile
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#0398ceb52683d1cbc2f354e29584ca83a5ccb943">
Dockerfile.static
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
debian/clean
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#de10d484239ca71114061a3bbe46adab9225eee0">
<span class="new-file">
+
debian/missing-sources/d3.js
</span>
</a>
</li>
<li class="file-stats">
<a href="#686a868721a4ca8f18c80005615d658597b2fb0f">
debian/patches/better_clean
</a>
</li>
<li class="file-stats">
<a href="#c99edf3687f92ddaeb98b563e4f5489c663bf73c">
debian/patches/crossbuild
</a>
</li>
<li class="file-stats">
<a href="#905bf2aeef99918e81405a9b9d92b52dc1016a00">
debian/patches/hardening_flags
</a>
</li>
<li class="file-stats">
<a href="#cfaa6fb2c1b74a35dd749f0c897acefbfe259b80">
debian/patches/libVCFH_unneeded
</a>
</li>
<li class="file-stats">
<a href="#8fd5d9bc159ae81ed8a7aeb4e50cfaaaa2954efd">
debian/patches/no_need_for_snappy
</a>
</li>
<li class="file-stats">
<a href="#ddca4a5ee07a35c24767c20c620ede918a755670">
debian/patches/no_pg
</a>
</li>
<li class="file-stats">
<a href="#7c3500a3d608da1759cc30eb7803f603bef12bb5">
debian/patches/no_rpath
</a>
</li>
<li class="file-stats">
<a href="#c6945b23e3ee25ceb7c9e38c2c191d8329a3b719">
debian/patches/parallize_better
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#4c0e18367b4a4c2fb5a4fb13dd30c8d2df5876b2">
debian/patches/simde
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
debian/patches/spelling
</a>
</li>
<li class="file-stats">
<a href="#dab62f8b1e2c1b8e9cad612e23a1000f554354b0">
debian/patches/static
</a>
</li>
<li class="file-stats">
<a href="#1ff5db05f77cacd2632d7f930035efb5057bc91b">
<span class="deleted-file">
−
debian/patches/use_packaged_boost
</span>
</a>
</li>
<li class="file-stats">
<a href="#40c6888a5efe81531cb32f995bcf2884f1e28cc8">
debian/patches/use_packaged_elfutils
</a>
</li>
<li class="file-stats">
<a href="#e0e0df1ee82b8fee55ec3f2bc46c840de2511e4d">
debian/patches/use_packaged_fastahack
</a>
</li>
<li class="file-stats">
<a href="#95c68a4c589d422e3ede3cc08f50047bd6a15734">
debian/patches/use_packaged_fermi-lite
</a>
</li>
<li class="file-stats">
<a href="#9172be6e11a3f3c4fde90e8d16ff8603d86f780f">
debian/patches/use_packaged_htslib
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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