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<h3>
Sascha Steinbiss pushed to branch master
at <a href="https://salsa.debian.org/med-team/augustus">Debian Med / augustus</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/7d19785a616ed89028a04541717aeb1d9cfd9030">7d19785a</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T18:38:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove docs tutorial dir from Files-Excluded
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/da55a5ec8c2840cc7caca535ff0f06cbd7c5cfbb">da55a5ec</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T23:56:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">extend doc-base
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/49d816563edfdddad78c8e801362927923a4c626">49d81656</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T23:57:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update d/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/5938fa3d74f3d650084a4603b0083a460e196ebb">5938fa3d</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T23:57:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">use patches prepared by upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/f66f74bc3870145134e1cc50246bd642c3674035">f66f74bc</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T23:58:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove obsolete directories from Files-Excluded
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/ebbe9d5004fc12172106a656afefb01b6929c7c2">ebbe9d50</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T23:58:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add Suggests for dependencies of the scripts
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/9f22f818d82ba0e00ff3f3e14164613f3c70f66e">9f22f818</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T23:59:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add some new build-deps and remove old libbam-dev build-dep
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/5a5596cb03927185b1ca34f3ce4e272ce6476efd">5a5596cb</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-28T23:59:54+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove Build-Using mechanics for libbam-dev
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/1ae0f94a88c4fa58886457ccda7d929ef006c158">1ae0f94a</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-29T00:00:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add some additional tools to install
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/bf78fa38ef805efc8b1e3bc3a5ab38ee04e0bab8">bf78fa38</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-29T00:00:27+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.4.0+dfsg2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/a8b7df07b4aeabd9f823c509834e086d2bac34e4">a8b7df07</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-29T00:13:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.4.0+dfsg2'
Update to upstream version '3.4.0+dfsg2'
with Debian dir 7c88fbdda665e4a0ef38baac502a044608b8bb7a</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/9e8199637f757d46a297065dd3f2894cdf724ec4">9e819963</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-29T01:10:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">final 3.4.0 cleanups
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/c0986aff3f4e08434ce19f306039c1f45825f6e0">c0986aff</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-29T01:15:51+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">adjust doc-base
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/augustus/-/commit/7074dce9b495056524a197459dd1b6a0a9f8edf2">7074dce9</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2020-12-29T01:16:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove obsolete "Team upload" changelog entry
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c4a4ecbc88b7d29669251615523cf506d46c2cb1">
debian/augustus-doc.doc-base
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#020ed08199356ca98fadcf40942b0f1ffa11cffd">
<span class="deleted-file">
−
debian/patches/buildflags.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#73dfd0148a639c8d7bd2eaa764466d87f4b51d14">
debian/patches/interpreter_paths.patch
</a>
</li>
<li class="file-stats">
<a href="#8ec45ae7ef0954353b9ee51be23c4b94305906f9">
debian/patches/keep_cflags
</a>
</li>
<li class="file-stats">
<a href="#26d2cb30f540f7d490697f097bd87457d3b634e2">
debian/patches/search_config_path
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#394e88af7855b2ed61b23fa9e03f4eec4cd6270c">
debian/patches/set_installdir
</a>
</li>
<li class="file-stats">
<a href="#3225478cf1add6af6733e61d810cdfde9a5b7d89">
<span class="new-file">
+
debian/patches/switch_cgp_testing_off.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#f28a4adcd5b86e88de9a8c9ffb2043d80e3c2115">
<span class="new-file">
+
docs/tutorial2015/augustus.css
</span>
</a>
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<li class="file-stats">
<a href="#bee1073b12a1b4f2ca4de19f040c4f52e47f5bcd">
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docs/tutorial2015/data/chr2L.sm.fa.gz
</span>
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<li class="file-stats">
<a href="#54e07c6749d05501a50fb1e5e5664a3e7795e4a7">
<span class="new-file">
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docs/tutorial2015/data/rnaseq1.fq
</span>
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<a href="#a994e175620b706b0aab80de86993496f59a03ce">
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docs/tutorial2015/data/rnaseq2.fq
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<a href="#e8fda5d7a69e5b5a332a32d1db050d4ac3e05a37">
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docs/tutorial2015/index.html
</span>
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<a href="#baab1b2224fae2b842385851d0eb53d95885c2c0">
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docs/tutorial2015/ittrain.html
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docs/tutorial2015/ppx.html
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<a href="#46016ac40d93e72f038b0a2220d89b6393c23760">
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docs/tutorial2015/prediction.html
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docs/tutorial2015/results/README.TXT
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docs/tutorial2015/results/aug.tomato.1-1M.gff
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docs/tutorial2015/results/chrom.sizes
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docs/tutorial2015/results/firsttest.out
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<h5>The diff was not included because it is too large.</h5>
</div>
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