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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/spoa">Debian Med / spoa</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/-/commit/89ab3dea4f409b30075c85308878de56d2524bc2">89ab3dea</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-04T11:35:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">patch from upstream to fix building shared lib
https://github.com/rvaser/spoa/commit/6f421bfdaeb1f2178d6768ef97c88500a2b5110e
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/-/commit/f73adf20f93a7a0eeb94ee35a0789d38808726e3">f73adf20</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-04T11:46:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update symbols for new version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/-/commit/0d64b4bd94059449dc6d5e79ec2705606b2e556b">0d64b4bd</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-04T12:16:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">split out upstream patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/spoa/-/commit/375af60330d4d21574acb7d31af52a721bd3dea7">375af603</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-04T12:23:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;"> TODO: There is no package matching [libcpu_featureslibcpu_features.so-dev]
TODO: devlibs error: There is no package matching
[libcpu_featureslibcpu_features.so-dev] and noone provides it, please
report bug to d-shlibs maintainer
Some issue with libcpu_features being linked dynamically instead of
statically?
</pre>
</li>
</ul>
<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
<span class="new-file">
+
debian/clean
</span>
</a>
</li>
<li class="file-stats">
<a href="#d276ec0708dee05796083d200c9c7a89293b9741">
debian/libspoa7.0.0.symbols.amd64
</a>
</li>
<li class="file-stats">
<a href="#1823cfdb97f631de92d185f9a7ef6c1f58bc9147">
debian/not-installed
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#295815bc81b7664bf5f47a7f64db6af47ad53941">
debian/patches/shared_and_static.patch
</a>
</li>
<li class="file-stats">
<a href="#a0da9bff5969be3a73954d4cf791cfe9e21ebfee">
<span class="new-file">
+
debian/patches/shared_lib_creation.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#ee54dc79014b3def963898e50c98877d46c6b27e">
debian/patches/use_debian_packaged_libs.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,6 +10,13 @@ spoa (4.0.5+ds-1) UNRELEASED; urgency=medium</td>
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10
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<td class="diff-line-num new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * build-dep on libcereal-dev and newer libbioparser-dev</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
11
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * Drop no_march_native.patch in favor of setting the option in debian/rules</span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * debian/rules: test/data/sample.fastq is now gziped upstream</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Update symbols for new version </span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> TODO: devlibs error: There is no package matching</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> [libcpu_featureslibcpu_features.so-dev] and noone provides it, please</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> report bug to d-shlibs maintainer</span>
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<td class="diff-line-num new old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> Some issue with libcpu_features being linked dynamically instead of</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> statically?</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 23 Sep 2020 21:11:35 +0200</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"></span>
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<li id="f5f51601866c86e59a004bd93fa415f5675be8c5">
<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#f5f51601866c86e59a004bd93fa415f5675be8c5"><strong>debian/clean</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">spoa.test.cereal</span></pre>
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<li id="d276ec0708dee05796083d200c9c7a89293b9741">
<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#d276ec0708dee05796083d200c9c7a89293b9741"><strong>debian/libspoa7.0.0.symbols.amd64</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">libspoa.so.7.0.0 libspoa7.0.0 #MINVER#</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">* Build-Depends-Package: libspoa-dev</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> CpuIdEx@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> FillX86BrandString@Base 3.4.0+ds</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> GetX86CacheInfo@Base 3.4.0+ds</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> GetX86FeaturesEnumName@Base 3.4.0+ds</span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> GetX86FeaturesEnumValue@Base 3.4.0+ds</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> GetX86Info@Base 3.4.0+ds</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> GetX86Microarchitecture@Base 3.4.0+ds</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> GetX86MicroarchitectureName@Base 3.4.0+ds</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> GetXCR0Eax@Base 3.4.0+ds</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> _ZN4spoa11createGraphEv@Base 1.1.3</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> _ZN4spoa15AlignmentEngine5alignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt10unique_ptrINS_5GraphESt14default_deleteISA_EE@Base 3.0.0</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> _ZGVN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5+ds</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> _ZGVZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5+ds</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> _ZN4spoa15AlignmentEngine5AlignERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKNS_5GraphEPi@Base 4.0.5+ds</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaa@Base 4.0.5+ds</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaaa@Base 4.0.5+ds</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> _ZN4spoa15AlignmentEngine6CreateENS_13AlignmentTypeEaaaaaa@Base 4.0.5+ds</span>
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14
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> _ZN4spoa15AlignmentEngineC1ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0</span>
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15
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> _ZN4spoa15AlignmentEngineC2ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE10initializeINS_14InstructionSetILS1_0EiEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS9_EEjjj@Base 3.4.0+ds</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE10initializeINS_14InstructionSetILS1_0EsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS9_EEjjj@Base 3.4.0+ds</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE5alignEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS6_EE@Base 3.4.0+ds</span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE6affineINS_14InstructionSetILS1_0EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE6affineINS_14InstructionSetILS1_0EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE6convexINS_14InstructionSetILS1_0EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE6convexINS_14InstructionSetILS1_0EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE6linearINS_14InstructionSetILS1_0EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE6linearINS_14InstructionSetILS1_0EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE7reallocEjjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EE8preallocEjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EED0Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EED1Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE0EED2Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE10initializeINS_14InstructionSetILS1_1EiEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS9_EEjjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE10initializeINS_14InstructionSetILS1_1EsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS9_EEjjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE5alignEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS6_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE6affineINS_14InstructionSetILS1_1EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE6affineINS_14InstructionSetILS1_1EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE6convexINS_14InstructionSetILS1_1EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE6convexINS_14InstructionSetILS1_1EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE6linearINS_14InstructionSetILS1_1EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE6linearINS_14InstructionSetILS1_1EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE7reallocEjjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EE8preallocEjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EED0Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EED1Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE1EED2Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE10initializeINS_14InstructionSetILS1_2EiEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS9_EEjjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE10initializeINS_14InstructionSetILS1_2EsEEEEvPKcRKSt10unique_ptrINS_5GraphESt14default_deleteIS9_EEjjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE5alignEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS6_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE6affineINS_14InstructionSetILS1_2EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE6affineINS_14InstructionSetILS1_2EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE6convexINS_14InstructionSetILS1_2EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE6convexINS_14InstructionSetILS1_2EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE6linearINS_14InstructionSetILS1_2EiEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE6linearINS_14InstructionSetILS1_2EsEEEESt6vectorISt4pairIiiESaIS8_EEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteISE_EE@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE7reallocEjjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EE8preallocEjj@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EED0Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EED1Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_4ArchE2EED2Ev@Base 3.4.0+ds</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine10initializeEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine5alignEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine6affineEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine6convexEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine6linearEPKcjRKSt10unique_ptrINS_5GraphESt14default_deleteIS4_EE@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine7reallocEjjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine8preallocEjj@Base 1.1.3</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE10InitializeINS_14InstructionSetILS1_0EiEEEEvPKcRKNS_5GraphEmmm@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE10InitializeINS_14InstructionSetILS1_0EsEEEEvPKcRKNS_5GraphEmmm@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE5AlignEPKcjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE6AffineINS_14InstructionSetILS1_0EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE6AffineINS_14InstructionSetILS1_0EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE6ConvexINS_14InstructionSetILS1_0EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE6ConvexINS_14InstructionSetILS1_0EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE6LinearINS_14InstructionSetILS1_0EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE6LinearINS_14InstructionSetILS1_0EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE7ReallocEmmh@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EE8PreallocEjh@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EED0Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EED1Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE0EED2Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE10InitializeINS_14InstructionSetILS1_1EsEEEEvPKcRKNS_5GraphEmmm@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE5AlignEPKcjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE6AffineINS_14InstructionSetILS1_1EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE6AffineINS_14InstructionSetILS1_1EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE6ConvexINS_14InstructionSetILS1_1EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE6LinearINS_14InstructionSetILS1_1EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE6LinearINS_14InstructionSetILS1_1EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE7ReallocEmmh@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EE8PreallocEjh@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EED0Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE1EED2Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE10InitializeINS_14InstructionSetILS1_2EiEEEEvPKcRKNS_5GraphEmmm@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE10InitializeINS_14InstructionSetILS1_2EsEEEEvPKcRKNS_5GraphEmmm@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE5AlignEPKcjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE6AffineINS_14InstructionSetILS1_2EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE6AffineINS_14InstructionSetILS1_2EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE6ConvexINS_14InstructionSetILS1_2EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE6ConvexINS_14InstructionSetILS1_2EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE6LinearINS_14InstructionSetILS1_2EiEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE6LinearINS_14InstructionSetILS1_2EsEEEESt6vectorISt4pairIiiESaIS8_EEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE7ReallocEmmh@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EE8PreallocEjh@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EED0Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EED1Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> _ZN4spoa19SimdAlignmentEngineILNS_12ArchitectureE2EED2Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine10InitializeEPKcjRKNS_5GraphE@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine5AlignEPKcjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine6AffineEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine6ConvexEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine6CreateENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine6LinearEjRKNS_5GraphEPi@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine7ReallocEmmh@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngine8PreallocEjh@Base 4.0.5+ds</span>
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61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngineC1ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0</span>
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62
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngineC2ENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0</span>
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63
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngineD0Ev@Base 1.1.3</span>
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64
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngineD1Ev@Base 1.1.3</span>
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65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> _ZN4spoa19SisdAlignmentEngineD2Ev@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> _ZN4spoa21createAlignmentEngineENS_13AlignmentTypeEaaa@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> _ZN4spoa21createAlignmentEngineENS_13AlignmentTypeEaaaa@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> _ZN4spoa21createAlignmentEngineENS_13AlignmentTypeEaaaaaa@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> _ZN4spoa25createSimdAlignmentEngineENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> _ZN4spoa25createSisdAlignmentEngineENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> _ZN4spoa4Edge12add_sequenceEjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> _ZN4spoa4EdgeC1Ejjjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> _ZN4spoa4EdgeC2Ejjjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> _ZN4spoa4EdgeD1Ev@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> _ZN4spoa4EdgeD2Ev@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> _ZN4spoa4NodeC1Ejj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> _ZN4spoa4NodeC2Ejj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> _ZN4spoa4NodeD1Ev@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> _ZN4spoa4NodeD2Ev@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> _ZN4spoa5Graph10createEdgeEjjjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> _ZN4spoa5Graph10createNodeEjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> _ZN4spoa5Graph12add_sequenceEPKcRKSt6vectorIjSaIjEEjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> _ZN4spoa5Graph13add_alignmentERKSt6vectorISt4pairIiiESaIS3_EEPKcjRKS1_IjSaIjEE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> _ZN4spoa5Graph13add_alignmentERKSt6vectorISt4pairIiiESaIS3_EEPKcjS9_j@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> _ZN4spoa5Graph13add_alignmentERKSt6vectorISt4pairIiiESaIS3_EEPKcjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> _ZN4spoa5Graph13add_alignmentERKSt6vectorISt4pairIiiESaIS3_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS1_IjSaIjEE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> _ZN4spoa5Graph13add_alignmentERKSt6vectorISt4pairIiiESaIS3_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESF_@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> _ZN4spoa5Graph13add_alignmentERKSt6vectorISt4pairIiiESaIS3_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> _ZN4spoa5Graph16topological_sortEv@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> _ZN4spoa5Graph17branch_completionERSt6vectorIlSaIlEERS1_IiSaIiEEj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> _ZN4spoa5Graph18generate_consensusB5cxx11ERSt6vectorIjSaIjEEb@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> _ZN4spoa5Graph18generate_consensusB5cxx11Ev@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> _ZN4spoa5Graph24traverse_heaviest_bundleEv@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> _ZN4spoa5Graph36generate_multiple_sequence_alignmentERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EEb@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> _ZN4spoa5Graph5clearEv@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> _ZN4spoa5Graph8add_edgeEjjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> _ZN4spoa5Graph8add_nodeEj@Base 1.1.3</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> _ZN4spoa25CreateSimdAlignmentEngineENS_13AlignmentTypeENS_16AlignmentSubtypeEaaaaaa@Base 4.0.5+ds</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> _ZN4spoa5Graph11AddSequenceEPKcRKSt6vectorIjSaIjEEjj@Base 4.0.5+ds</span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> _ZN4spoa5Graph12AddAlignmentERKSt6vectorISt4pairIiiESaIS3_EEPKcjRKS1_IjSaIjEE@Base 4.0.5+ds</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> _ZN4spoa5Graph12AddAlignmentERKSt6vectorISt4pairIiiESaIS3_EEPKcjS9_j@Base 4.0.5+ds</span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> _ZN4spoa5Graph12AddAlignmentERKSt6vectorISt4pairIiiESaIS3_EEPKcjj@Base 4.0.5+ds</span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> _ZN4spoa5Graph12AddAlignmentERKSt6vectorISt4pairIiiESaIS3_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKS1_IjSaIjEE@Base 4.0.5+ds</span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> _ZN4spoa5Graph12AddAlignmentERKSt6vectorISt4pairIiiESaIS3_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESF_@Base 4.0.5+ds</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> _ZN4spoa5Graph12AddAlignmentERKSt6vectorISt4pairIiiESaIS3_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEj@Base 4.0.5+ds</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> _ZN4spoa5Graph15TopologicalSortEv@Base 4.0.5+ds</span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> _ZN4spoa5Graph16BranchCompletionEjPSt6vectorIlSaIlEEPS1_IPNS0_4NodeESaIS6_EE@Base 4.0.5+ds</span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> _ZN4spoa5Graph17GenerateConsensusB5cxx11EPSt6vectorIjSaIjEEb@Base 4.0.5+ds</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> _ZN4spoa5Graph17GenerateConsensusB5cxx11Ev@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> _ZN4spoa5Graph22TraverseHeaviestBundleEv@Base 4.0.5+ds</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> _ZN4spoa5Graph33GenerateMultipleSequenceAlignmentB5cxx11Eb@Base 4.0.5+ds</span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> _ZN4spoa5Graph4Edge11AddSequenceEjj@Base 4.0.5+ds</span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> _ZN4spoa5Graph4EdgeC1EPNS0_4NodeES3_jj@Base 4.0.5+ds</span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> _ZN4spoa5Graph4EdgeC2EPNS0_4NodeES3_jj@Base 4.0.5+ds</span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> _ZN4spoa5Graph4NodeC1Ejj@Base 4.0.5+ds</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> _ZN4spoa5Graph4NodeC2Ejj@Base 4.0.5+ds</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> _ZN4spoa5Graph5ClearEv@Base 4.0.5+ds</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> _ZN4spoa5Graph7AddEdgeEPNS0_4NodeES2_j@Base 4.0.5+ds</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> _ZN4spoa5Graph7AddNodeEj@Base 4.0.5+ds</span>
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102
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> _ZN4spoa5GraphC1Ev@Base 1.1.3</span>
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103
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> _ZN4spoa5GraphC2Ev@Base 1.1.3</span>
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104
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> _ZN4spoa5GraphD1Ev@Base 1.1.3</span>
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105
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91
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> _ZN4spoa5GraphD2Ev@Base 1.1.3</span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> _ZNK4spoa4Node8coverageEv@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> _ZNK4spoa4Node9successorERjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> _ZNK4spoa5Graph16update_alignmentERSt6vectorISt4pairIiiESaIS3_EERKS1_IiSaIiEE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> _ZNK4spoa5Graph22extract_subgraph_nodesERSt6vectorIbSaIbEEjj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> _ZNK4spoa5Graph23is_topologically_sortedEv@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> _ZNK4spoa5Graph38initialize_multiple_sequence_alignmentERSt6vectorIjSaIjEE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> _ZNK4spoa5Graph8subgraphEjjRSt6vectorIiSaIiEE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> _ZNK4spoa5Graph9print_dotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 1.1.5</span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> _ZNK4spoa5Graph9print_gfaERSoRKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS8_EEb@Base 3.4.0</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> _ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEv@Base 4.0.5+ds</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> _ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE8instanceE@Base 4.0.5+ds</span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> _ZN6cereal6detail18PolymorphicCastersD1Ev@Base 4.0.5+ds</span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> _ZN6cereal6detail18PolymorphicCastersD2Ev@Base 4.0.5+ds</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> _ZNK4spoa15AlignmentEngine23WorstCaseAlignmentScoreEll@Base 4.0.5+ds</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> _ZNK4spoa5Graph15ExtractSubgraphEPKNS0_4NodeES3_@Base 4.0.5+ds</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> _ZNK4spoa5Graph15UpdateAlignmentERKSt6vectorIPKNS0_4NodeESaIS4_EEPS1_ISt4pairIiiESaISA_EE@Base 4.0.5+ds</span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> _ZNK4spoa5Graph21IsTopologicallySortedEv@Base 4.0.5+ds</span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> _ZNK4spoa5Graph35InitializeMultipleSequenceAlignmentEPj@Base 4.0.5+ds</span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> _ZNK4spoa5Graph4Node8CoverageEv@Base 4.0.5+ds</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> _ZNK4spoa5Graph4Node9SuccessorEj@Base 4.0.5+ds</span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> _ZNK4spoa5Graph8PrintDotERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 4.0.5+ds</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> _ZNK4spoa5Graph8SubgraphEjjPSt6vectorIPKNS0_4NodeESaIS4_EE@Base 4.0.5+ds</span>
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115
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> _ZNKSt5ctypeIcE8do_widenEc@Base 1.1.5</span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> _ZNSt10_HashtableISt10type_indexSt4pairIKS0_St13unordered_mapIS0_St6vectorIPKN6cereal6detail17PolymorphicCasterESaIS9_EESt4hashIS0_ESt8equal_toIS0_ESaIS1_IS2_SB_EEEESaISJ_ENSt8__detail10_Select1stESF_SD_NSL_18_Mod_range_hashingENSL_20_Default_ranged_hashENSL_20_Prime_rehash_policyENSL_17_Hashtable_traitsILb0ELb0ELb1EEEE5clearEv@Base 4.0.5+ds</span>
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116
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> _ZNSt10_HashtableIjjSaIjENSt8__detail9_IdentityESt8equal_toIjESt4hashIjENS1_18_Mod_range_hashingENS1_20_Default_ranged_hashENS1_20_Prime_rehash_policyENS1_17_Hashtable_traitsILb0ELb1ELb1EEEE9_M_rehashEmRKm@Base 3.0.0</span>
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117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> _ZNSt11_Deque_baseIjSaIjEE17_M_initialize_mapEm@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> _ZNSt11_Deque_baseIjSaIjEED1Ev@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> _ZNSt11_Deque_baseIjSaIjEED2Ev@Base 1.1.3</span>
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120
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC1IN4spoa4EdgeESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 1.1.3</span>
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122
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC2IN4spoa4EdgeESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 1.1.3</span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> _ZNSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE10_M_releaseEv@Base 1.1.3</span>
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124
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> _ZNSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EE10_M_destroyEv@Base 1.1.3</span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> _ZNSt5dequeIPKN4spoa5Graph4NodeESaIS4_EE16_M_push_back_auxIJRKS4_EEEvDpOT_@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> _ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE16_M_push_back_auxIJRKS3_EEEvDpOT_@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> _ZNSt5dequeIPN4spoa5Graph4NodeESaIS3_EE17_M_reallocate_mapEmb@Base 4.0.5+ds</span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJRS5_EEEvDpOT_@Base 1.1.3</span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJRS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="plaintext"> _ZNSt6vectorISt10shared_ptrIN4spoa4EdgeEESaIS3_EE17_M_realloc_insertIJRS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN4spoa4NodeESt14default_deleteIS2_EESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRKjiEEEvDpOT_@Base 3.0.0</span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> _ZNSt6vectorIPKN4spoa5Graph4NodeESaIS4_EE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPS4_S6_EEmRKS4_@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> _ZNSt6vectorIPN4spoa5Graph4EdgeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> _ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJRS3_EEEvDpOT_@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> _ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE12emplace_backIJS3_EEEvDpOT_@Base 4.0.5+ds</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> _ZNSt6vectorIPN4spoa5Graph4NodeESaIS3_EE17_M_realloc_insertIJRKS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN4spoa5Graph4NodeESt14default_deleteIS3_EESaIS6_EE17_M_realloc_insertIJPS3_EEEvN9__gnu_cxx17__normal_iteratorIPS6_S8_EEDpOT_@Base 4.0.5+ds</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJRjiEEEvDpOT_@Base 4.0.5+ds</span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJiRiEEEvDpOT_@Base 3.4.0+ds</span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJijEEEvDpOT_@Base 3.0.0</span>
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjiEEEvDpOT_@Base 3.4.0+ds</span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> _ZNSt6vectorISt4pairIiiESaIS1_EE12emplace_backIJjjEEEvDpOT_@Base 3.0.0</span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 1.1.3</span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPiS1_EEmRKi@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE12emplace_backIJRKiEEEvDpOT_@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE12emplace_backIJRiEEEvDpOT_@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE12emplace_backIJRjEEEvDpOT_@Base 1.1.3</span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE12emplace_backIJiEEEvDpOT_@Base 3.4.0+ds</span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 3.4.0+ds</span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE14_M_fill_insertEN9__gnu_cxx17__normal_iteratorIPjS1_EEmRKj@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJ<span class="idiff left right">RKjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 1.1.3</span></span>
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJ<span class="idiff left right">iEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 4.0.5+ds</span></span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> _ZTIN4spoa15AlignmentEngineE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> _ZTIN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE0EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="plaintext"> _ZTIN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE1EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> _ZTIN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE2EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> _ZTIN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE0EEE@Base 4.0.5</span>+ds</span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> _ZTIN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE1EEE@Base 4.0.5</span>+ds</span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> _ZTIN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE2EEE@Base 4.0.5</span>+ds</span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> _ZTIN4spoa19SisdAlignmentEngineE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext"> _ZTISt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> _ZTISt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> _ZTISt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.3</span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> _ZTSN4spoa15AlignmentEngineE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="plaintext"> _ZTSN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE0EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> _ZTSN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE1EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> _ZTSN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE2EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> _ZTSN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE0EEE@Base 4.0.5</span>+ds</span>
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> _ZTSN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE1EEE@Base 4.0.5</span>+ds</span>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> _ZTSN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE2EEE@Base 4.0.5</span>+ds</span>
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> _ZTSN4spoa19SisdAlignmentEngineE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> _ZTSSt11_Mutex_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> _ZTSSt14default_deleteIN4spoa4EdgeEE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> _ZTSSt16_Sp_counted_baseILN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> _ZTSSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.3</span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> _ZTVN4spoa15AlignmentEngineE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> _ZTVN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE0EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> _ZTVN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE1EEE@Base 3.4.0</span>+ds</span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> _ZTVN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">4ArchE2EEE@Base 3.4.0</span>+ds</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> _ZTVN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE0EEE@Base 4.0.5</span>+ds</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> _ZTVN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE1EEE@Base 4.0.5</span>+ds</span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> _ZTVN4spoa19SimdAlignmentEngineILNS_<span class="idiff left right">12ArchitectureE2EEE@Base 4.0.5</span>+ds</span>
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170
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> _ZTVN4spoa19SisdAlignmentEngineE@Base 1.1.3</span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> _Z<span class="idiff left right">TVSt19_Sp_counted_deleterIPN4spoa4EdgeESt14default_deleteIS1_ESaIvELN9__gnu_cxx12_Lock_policyE2EE@Base 1.1.3</span></span></pre>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> _Z<span class="idiff left right">ZN6cereal6detail12StaticObjectINS0_18PolymorphicCastersEE6createEvE1t@Base 4.0.5+ds</span></span></pre>
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<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#1823cfdb97f631de92d185f9a7ef6c1f58bc9147"><strong>debian/not-installed</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@ usr/lib/*/libcpu_features.a</td>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">usr/lib/*/cmake/CpuFeatures/*</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">usr/bin/list_cpu_features</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">usr/include/cpu_features/*</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">usr/lib/*/libspoa_static.a</span></pre>
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<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">shared_lib_creation.patch</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix-ftbfs-gcc-10.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">use_debian_packaged_libs.patch</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"><span class="idiff left right">#</span>shared_and_static.patch</span></pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">shared_and_static.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#295815bc81b7664bf5f47a7f64db6af47ad53941"><strong>debian/patches/shared_and_static.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,7 +11,7 @@ Description: Build shared and static lib</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-set(BUILD_SHARED_LIBS OFF CACHE BOOL "Build all libraries as shared")</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#set(BUILD_SHARED_LIBS OFF CACHE BOOL "Build all libraries as shared")</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> option(spoa_optimize_for_native "Build spoa with -march=native" O<span class="idiff left right">FF</span>)</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> option(spoa_optimize_for_native "Build spoa with -march=native" O<span class="idiff left right">N</span>)</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> option(spoa_optimize_for_portability "Build spoa with -msse4.1" OFF)</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"><span class="p">@@ -48,7 +48,13 @@</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> add_subdirectory(vendor/cereal EXCLUDE_FROM_ALL)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28,7 +28,7 @@ Description: Build shared and static lib</td>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="diff"> src/alignment_engine.cpp</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> src/graph.cpp</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"> src/sisd_alignment_engine.cpp</span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"><span class="p">@@ -58,<span class="idiff left right">11 +64,15</span> @@</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="p">@@ -58,<span class="idiff left right">6 +64,11</span> @@</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"> $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/vendor/simde></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="diff"> $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/vendor/cpu_features/include></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"> $<INSTALL_INTERFACE:include>)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,15 +39,8 @@ Description: Build shared and static lib</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $<INSTALL_INTERFACE:include>)</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="diff"> target_link_libraries(${PROJECT_NAME}</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff"> cereal)</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-if (BUILD_SHARED_LIBS)</span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- set_property(TARGET ${PROJECT_NAME} PROPERTY SOVERSION = "7.0.0")</span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-endif ()</span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set_property(TARGET ${PROJECT_NAME} PROPERTY SOVERSION = "7.0.0")</span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set_property(TARGET ${PROJECT_NAME}_static PROPERTY SOVERSION = "7.0.0")</span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="diff"> if (spoa_generate_dispatch)</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="diff"> if (NOT TARGET cpu_features)</span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="diff"><span class="p">@@ -99,6 +109,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> if (BUILD_SHARED_LIBS)</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="p">@@ -99,6 +110,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="diff"> include(GNUInstallDirs)</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="diff"> install(TARGETS ${PROJECT_NAME}</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"> DESTINATION ${CMAKE_INSTALL_LIBDIR})</span>
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<li id="a0da9bff5969be3a73954d4cf791cfe9e21ebfee">
<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#a0da9bff5969be3a73954d4cf791cfe9e21ebfee"><strong>debian/patches/shared_lib_creation.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From 6f421bfdaeb1f2178d6768ef97c88500a2b5110e Mon Sep 17 00:00:00 2001</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">From: rvaser <robert.vaser@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Date: Mon, 4 Jan 2021 10:47:07 +0800</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Subject: Fix shared lib creation</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">diff --git a/CMakeLists.txt b/CMakeLists.txt</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">index d61e74d..ddd0440 100644</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/CMakeLists.txt</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">@@ -61,7 +61,7 @@</span> target_include_directories(${PROJECT_NAME} PUBLIC</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> target_link_libraries(${PROJECT_NAME}</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> cereal)</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> if (BUILD_SHARED_LIBS)</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- set_property(TARGET ${PROJECT_NAME} PROPERTY SOVERSION = "7.0.0")</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ set_property(TARGET ${PROJECT_NAME} PROPERTY SOVERSION "7.0.0")</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> endif ()</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> if (spoa_generate_dispatch)</span></pre>
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<li id="ee54dc79014b3def963898e50c98877d46c6b27e">
<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#ee54dc79014b3def963898e50c98877d46c6b27e"><strong>debian/patches/use_debian_packaged_libs.patch</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="p">Last-Update: Fri, 08 Jun 2018 13:20:51 +0200</span></span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Use Debian packaged libraries</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- spoa.orig/CMakeLists.txt</span></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ spoa/CMakeLists.txt</span></span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="p">@@ -110,18 +110,11 @@</span></span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/spoa/-/compare/acef7d2ad47bd3603b2d4012e5c8b7e5d521bc55...375af60330d4d21574acb7d31af52a721bd3dea7#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,6 +29,7 @@ override_dh_install:</td>
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29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> --multiarch \</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> --devunversioned \</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> --exclude-la \</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> --exclude-a \</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> --movedev debian/tmp/usr/include/spoa usr/include \</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> --movedev debian/tmp/usr/lib/*/pkgconfig usr/lib/$(DEB_HOST_MULTIARCH) \</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> debian/tmp/usr/lib/*/*.so</span>
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