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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/63a97f73868a4906d228a329174544fcda25f189">63a97f73</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-05T13:45:08+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/63a97f73868a4906d228a329174544fcda25f189#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 05 Jan 2021 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 05 Jan 2021 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">4</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">8</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 5<span class="idiff left right">2</span> | {his,covid-19,imaging,practice,laboratory,oncology} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">8</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">6</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">9</span> | {imaging,covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 5<span class="idiff left right">3</span> | {his,covid-19,imaging,practice,laboratory,oncology} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">9</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> amide | 33 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dicomscope | 29 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicom3tools | 28 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">3</span> | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> htsjdk | 2<span class="idiff left right">2</span> | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> invesalius | <span class="idiff left right">19</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> invesalius | <span class="idiff left right">20</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> nifticlib | 19 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> odin | 18 | {imaging-dev,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> gnumed-server | 17 | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> dicomnifti | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> gdcm | 15 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> king | 15 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> minc-tools | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> gdcm | 14 | {covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> plastimatch | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> mia | 13 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,10 +29,10 @@ Last-Update: Tue, 05 Jan 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> vtk-dicom | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> biosig | 10 | {physics,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> librg-utils-perl | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> melting | 9 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> obitools | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> dicompyler | 8 | {oncology} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> bamkit | 7 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> bio-tradis | 7 | {bio-dev,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,13 +42,13 @@ Last-Update: Tue, 05 Jan 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> multiqc | 7 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> nifti2dicom | 7 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> treeview | 7 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> busco | 6 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> orthanc-postgresql | 6 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> prime-phylo | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> rambo-k | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> beast-mcmc | 5 | {bio-phylogeny,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -74,7 +74,6 @@ Last-Update: Tue, 05 Jan 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> arden | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> biomaj3-cli | 4 | {cloud} | </span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> embassy-domalign | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> lamarc | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,6 +97,7 @@ Last-Update: Tue, 05 Jan 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> delly | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> ecopcr | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> embassy-domalign | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> fastml | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -170,8 +170,8 @@ Last-Update: Tue, 05 Jan 2021 01:42:03 +0000</td>
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> bbmap | 0 | {bio,covid-19} | </span>
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171
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> biosig | 0 | {physics} | </span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> biosig | 0 | {imaging-dev,physics} | </span>
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> biosig | 0 | {physics,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> biosig | 0 | {imaging-dev,physics} | </span>
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> bmtk | 0 | {psychology} | </span>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> camp | 0 | {imaging-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -225,8 +225,8 @@ Last-Update: Tue, 05 Jan 2021 01:42:03 +0000</td>
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225
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> pique | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> pplacer | 0 | {covid-19,bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> python-bcbio-gff | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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