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<h3>
Étienne Mollier pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/libmaus2/-/commit/062048153d7968dac2923eff62d65dcdc9102618">06204815</a></strong>
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<span>by Étienne Mollier</span>
<i>at 2021-01-02T21:34:25+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.768+dfsg</pre>
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<h4>5 changed files:</h4>
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<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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<li class="file-stats">
<a href="#5092c9a5f0937973b6026936294b932391b3c71c">
src/libmaus2/bambam/BamNumericalIndexGenerator.hpp
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<li class="file-stats">
<a href="#01f99a24fa1f7e8a49e87980e7fde51528e8b68c">
src/libmaus2/lcs/AlignmentTraceContainer.hpp
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<li class="file-stats">
<a href="#81507a83eab262366254b02028ed86acc599bca3">
src/libmaus2/protein/Align.hpp
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<li class="file-stats">
<a href="#6bce6ba7853cfde7990a59364860c00fbb2922a5">
src/libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp
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<h4>Changes:</h4>
<li id="87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/062048153d7968dac2923eff62d65dcdc9102618#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.76<span class="idiff left right">7</span>,[germant@miltenyibiotec.de],[libmaus2],[https://gitlab.com/german.tischler/libmaus2])</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:76<span class="idiff left right">7</span>:0</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.76<span class="idiff left right">8</span>,[germant@miltenyibiotec.de],[libmaus2],[https://gitlab.com/german.tischler/libmaus2])</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:76<span class="idiff left right">8</span>:0</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">AC_MSG_NOTICE([Configuring for source in directory ${srcdir}])</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">AC_CANONICAL_SYSTEM</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">AC_CANONICAL_HOST</span>
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<li id="5092c9a5f0937973b6026936294b932391b3c71c">
<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/062048153d7968dac2923eff62d65dcdc9102618#5092c9a5f0937973b6026936294b932391b3c71c"><strong>src/libmaus2/bambam/BamNumericalIndexGenerator.hpp</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -204,7 +204,7 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">tmpfn</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">indexfn</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">".tmp"</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ISI</span><span class="p">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;">indexfn</span><span class="p">));</span></span>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">OutputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">OSI</span><span class="p">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">OutputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">index</span>fn</span><span class="p">));</span></span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">OutputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">OSI</span><span class="p">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">OutputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">tmp</span>fn</span><span class="p">));</span></span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// copy header</span></span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">NumberSerialisation</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">serialiseNumber</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">OSI</span><span class="p">,</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">NumberSerialisation</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">deserialiseNumber</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">ISI</span><span class="p">));</span></span>
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<li id="01f99a24fa1f7e8a49e87980e7fde51528e8b68c">
<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/062048153d7968dac2923eff62d65dcdc9102618#01f99a24fa1f7e8a49e87980e7fde51528e8b68c"><strong>src/libmaus2/lcs/AlignmentTraceContainer.hpp</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1924" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1924" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1924,6 +1924,27 @@ namespace libmaus2</td>
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1924
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<pre style="margin: 0;"> <span id="LC1924" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">suffixPositive</span><span class="p">(</span><span class="n" style="color: #333;">ta</span><span class="p">,</span><span class="n" style="color: #333;">te</span><span class="p">,</span><span class="n" style="color: #333;">match_score</span><span class="p">,</span><span class="n" style="color: #333;">mismatch_score</span><span class="p">,</span><span class="n" style="color: #333;">ins_score</span><span class="p">,</span><span class="n" style="color: #333;">del_score</span><span class="p">);</span></span>
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1925
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1925
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<pre style="margin: 0;"> <span id="LC1925" class="line" lang="cpp"> <span class="p">}</span></span>
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1926
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1926
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<pre style="margin: 0;"> <span id="LC1926" class="line" lang="cpp"></span>
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1927
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<pre style="margin: 0;">+<span id="LC1927" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">push</span><span class="p">(</span><span class="n" style="color: #333;">step_type</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">step</span><span class="p">)</span></span>
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1928
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<pre style="margin: 0;">+<span id="LC1928" class="line" lang="cpp"> <span class="p">{</span></span>
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1929
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<pre style="margin: 0;">+<span id="LC1929" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">te</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">trace</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">()</span> <span class="p">)</span></span>
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1930
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<pre style="margin: 0;">+<span id="LC1930" class="line" lang="cpp"> <span class="p">{</span></span>
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1931
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<pre style="margin: 0;">+<span id="LC1931" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">curtracelen</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getTraceLength</span><span class="p">();</span></span>
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1932
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<pre style="margin: 0;">+<span id="LC1932" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">one</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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1933
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<pre style="margin: 0;">+<span id="LC1933" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">newsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">max</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">curtracelen</span><span class="p">,</span><span class="n" style="color: #333;">one</span><span class="p">);</span></span>
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1934
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<pre style="margin: 0;">+<span id="LC1934" class="line" lang="cpp"></span>
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1935
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<pre style="margin: 0;">+<span id="LC1935" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">step_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">ntrace</span><span class="p">(</span><span class="n" style="color: #333;">newsize</span><span class="p">,</span><span class="nb" style="color: #0086b3;">false</span><span class="p">);</span></span>
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1936
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<pre style="margin: 0;">+<span id="LC1936" class="line" lang="cpp"></span>
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1937
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<pre style="margin: 0;">+<span id="LC1937" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">copy</span><span class="p">(</span><span class="n" style="color: #333;">ta</span><span class="p">,</span><span class="n" style="color: #333;">te</span><span class="p">,</span><span class="n" style="color: #333;">ntrace</span><span class="p">.</span><span class="n" style="color: #333;">begin</span><span class="p">());</span></span>
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1938
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<pre style="margin: 0;">+<span id="LC1938" class="line" lang="cpp"></span>
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1939
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<pre style="margin: 0;">+<span id="LC1939" class="line" lang="cpp"> <span class="n" style="color: #333;">trace</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ntrace</span><span class="p">;</span></span>
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1940
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<pre style="margin: 0;">+<span id="LC1940" class="line" lang="cpp"> <span class="n" style="color: #333;">ta</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace</span><span class="p">.</span><span class="n" style="color: #333;">begin</span><span class="p">();</span></span>
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1941
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<pre style="margin: 0;">+<span id="LC1941" class="line" lang="cpp"> <span class="n" style="color: #333;">te</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">trace</span><span class="p">.</span><span class="n" style="color: #333;">begin</span><span class="p">()</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">curtracelen</span><span class="p">;</span></span>
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1942
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<pre style="margin: 0;">+<span id="LC1942" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">te</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">trace</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">()</span> <span class="p">);</span></span>
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1943
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<pre style="margin: 0;">+<span id="LC1943" class="line" lang="cpp"> <span class="p">}</span></span>
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1944
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<pre style="margin: 0;">+<span id="LC1944" class="line" lang="cpp"></span>
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1945
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<pre style="margin: 0;">+<span id="LC1945" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">te</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">trace</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">()</span> <span class="p">);</span></span>
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1946
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<pre style="margin: 0;">+<span id="LC1946" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">te</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">step</span><span class="p">;</span></span>
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1947
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<pre style="margin: 0;">+<span id="LC1947" class="line" lang="cpp"> <span class="p">}</span></span>
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1948
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<pre style="margin: 0;"> <span id="LC1948" class="line" lang="cpp"></span>
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1928
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1949
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<pre style="margin: 0;"> <span id="LC1949" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">push</span><span class="p">(</span><span class="n" style="color: #333;">AlignmentTraceContainer</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">O</span><span class="p">)</span></span>
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1950
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<pre style="margin: 0;"> <span id="LC1950" class="line" lang="cpp"> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/062048153d7968dac2923eff62d65dcdc9102618#81507a83eab262366254b02028ed86acc599bca3"><strong>src/libmaus2/protein/Align.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,6 +20,7 @@</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="cpp"></span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/protein/Blosum62.hpp></span></span>
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22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/autoarray/AutoArray.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/NumberSerialisation.hpp></span></span>
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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25
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/-/commit/062048153d7968dac2923eff62d65dcdc9102618#6bce6ba7853cfde7990a59364860c00fbb2922a5"><strong>src/libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4928,7 +4928,7 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC4928" class="line" lang="cpp"></span>
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4929
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<pre style="margin: 0;"> <span id="LC4929" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">astr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">bstr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">()</span> <span class="p">);</span></span>
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4930
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4930
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<pre style="margin: 0;"> <span id="LC4930" class="line" lang="cpp"></span>
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4931
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<pre style="margin: 0;">-<span id="LC4931" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">verbose</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">5</span> <span class="p">)</span></span>
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4931
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<pre style="margin: 0;">+<span id="LC4931" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">options</span><span class="p">.</span><span class="n" style="color: #333;">verbose</span> <span class="o" style="font-weight: 600;">>=</span> <span class="mi" style="color: #099;">5</span> <span class="o" style="font-weight: 600;"><span class="idiff left">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">logstr</span></span><span class="idiff right"> </span><span class="p">)</span></span>
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4932
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4932
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<pre style="margin: 0;"> <span id="LC4932" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">logstr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[V] checked serialisation"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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4933
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4933
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<pre style="margin: 0;"> <span id="LC4933" class="line" lang="cpp"> <span class="p">}</span></span>
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4934
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<pre style="margin: 0;"> <span id="LC4934" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4982" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4982,7 +4982,7 @@ namespace libmaus2</td>
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4982
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4982
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<pre style="margin: 0;"> <span id="LC4982" class="line" lang="cpp"></span>
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4983
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4983
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<pre style="margin: 0;"> <span id="LC4983" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">astr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">bstr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">()</span> <span class="p">);</span></span>
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4984
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4984
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<pre style="margin: 0;"> <span id="LC4984" class="line" lang="cpp"></span>
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4985
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<pre style="margin: 0;">-<span id="LC4985" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right">// if ( options.verbose >= 5</span> )</span></span>
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4985
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<pre style="margin: 0;">+<span id="LC4985" class="line" lang="cpp"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">options</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">verbose</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">>=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">5</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">logstr</span></span> <span class="p">)</span></span>
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4986
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4986
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<pre style="margin: 0;"> <span id="LC4986" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">logstr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[V] checked serialisation after block sorting"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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4987
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4987
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<pre style="margin: 0;"> <span id="LC4987" class="line" lang="cpp"> <span class="p">}</span></span>
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4988
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4988
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<pre style="margin: 0;"> <span id="LC4988" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="5022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5022,7 +5022,7 @@ namespace libmaus2</td>
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5022
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5022
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<pre style="margin: 0;"> <span id="LC5022" class="line" lang="cpp"></span>
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5023
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5023
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<pre style="margin: 0;"> <span id="LC5023" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">astr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">bstr</span><span class="p">.</span><span class="n" style="color: #333;">str</span><span class="p">()</span> <span class="p">);</span></span>
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5024
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5024
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<pre style="margin: 0;"> <span id="LC5024" class="line" lang="cpp"></span>
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5025
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<pre style="margin: 0;">-<span id="LC5025" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right">// if ( options.verbose >= 5</span> )</span></span>
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5025
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<pre style="margin: 0;">+<span id="LC5025" class="line" lang="cpp"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">options</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">verbose</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">>=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">5</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">logstr</span></span> <span class="p">)</span></span>
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5026
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5026
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<pre style="margin: 0;"> <span id="LC5026" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">logstr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"[V] checked serialisation after filling gap request objects"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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5027
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5027
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<pre style="margin: 0;"> <span id="LC5027" class="line" lang="cpp"> <span class="p">}</span></span>
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5028
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5028
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<pre style="margin: 0;"> <span id="LC5028" class="line" lang="cpp"></span>
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