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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/picard-tools">Debian Med / picard-tools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/50f29de75ad0d033ef637bedc997b3e7cc4c97a5">50f29de7</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-07T13:41:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/a51591b391fe3a248a9e1ddc74a654c204764350">a51591b3</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-07T13:41:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.24.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/97da66451c1d26d361bec134539a39b774767f01">97da6645</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-07T13:42:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.24.0+dfsg'
Update to upstream version '2.24.0+dfsg'
with Debian dir da8fff9effd15134064ac13e5134774472066705</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/af65fbfa962e9b685579d0abe1f15fd0e899e4f1">af65fbfa</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-07T13:42:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/0096e3a0e1c4dd292a2001015239a018de929c4b">0096e3a0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-07T13:43:45+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">refresh patches.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/940f60327f0110324252c9b4867a3ab3b855a0d1">940f6032</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-07T13:43:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/picard-tools/-/commit/15cff3129061670ba13b4f46baea41df1a5cd13e">15cff312</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-07T13:59:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;"> TODO: test failures
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#4416da23ca69dd7403c07c230b77bb0c32e0abb1">
debian/patches/30-tests-fix-dataprovider.patch
</a>
</li>
<li class="file-stats">
<a href="#2112a29d6b2dc089fd18634ad82cb140e99b56c6">
debian/patches/40-tests-fix-testng.patch
</a>
</li>
<li class="file-stats">
<a href="#bac4c9ac8d5063b8b48c84e1a30915ee1d4b4523">
src/main/java/picard/analysis/AlignmentSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#39ad2a42470243aa1402488d16e8309995fc1180">
src/main/java/picard/analysis/AlignmentSummaryMetricsCollector.java
</a>
</li>
<li class="file-stats">
<a href="#3a02115cc24686ccecd94ec7f340c5890a553d38">
src/main/java/picard/analysis/CollectAlignmentSummaryMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#8d7507e76526876f60daef574438762bd6f57ab0">
src/main/java/picard/analysis/CollectBaseDistributionByCycle.java
</a>
</li>
<li class="file-stats">
<a href="#39018791387cf476a9ea4511dd7a82d4982e3c05">
src/main/java/picard/analysis/CollectGcBiasMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#a8427986ca1c000c6402307f4ef77043d503630e">
src/main/java/picard/analysis/CollectInsertSizeMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#2269f0b41b877093e5ef84c96198be511137ddbc">
src/main/java/picard/analysis/CollectMultipleMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#ef73529293175de94b68d4817a681e5643b34dd8">
src/main/java/picard/analysis/CollectRnaSeqMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#13f54df4e2b29414eecb5c0cbc1da4d3e02dc14e">
src/main/java/picard/analysis/CollectRrbsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#ef17ffbbef833877458003eb2f12fc07610dfc1e">
src/main/java/picard/analysis/CollectWgsMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#9a97429e0fb33ada2f86ffefa4c68b6a1554dab7">
src/main/java/picard/analysis/CollectWgsMetricsWithNonZeroCoverage.java
</a>
</li>
<li class="file-stats">
<a href="#da9ff87ef6c58326bf722021f76a9882a5eea09c">
src/main/java/picard/analysis/MeanQualityByCycle.java
</a>
</li>
<li class="file-stats">
<a href="#8d0504dc5db7e6ffe8a19828bf6d32a8aff6f8dc">
src/main/java/picard/analysis/QualityScoreDistribution.java
</a>
</li>
<li class="file-stats">
<a href="#a4eadc1086ad98cf8ee663d0279108246675300e">
src/main/java/picard/analysis/directed/PanelMetricsBase.java
</a>
</li>
<li class="file-stats">
<a href="#7dc078e8a631cb6833fea5fe97f4d605fadaef7f">
src/main/java/picard/analysis/directed/TargetMetricsCollector.java
</a>
</li>
<li class="file-stats">
<a href="#ad1f1dc5e8b9664bb405dbc8386d79b194eada83">
src/main/java/picard/analysis/replicates/CollectIndependentReplicateMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#f91c189fd4550d2b3a19984cf8214fc36e993efb">
src/main/java/picard/arrays/GtcToVcf.java
</a>
</li>
<li class="file-stats">
<a href="#1fa2570ced8b3c33e4b3bd1f563ab3786ec64e29">
src/main/java/picard/cmdline/CommandLineProgram.java
</a>
</li>
<li class="file-stats">
<a href="#275e1a3adda92e2755d0c2f78a9802f1c7460f96">
<span class="deleted-file">
−
src/main/java/picard/illumina/parser/ClusterIntensityFileReader.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#20dc8786dd862a59374a77bb4650068fe097b466">
<span class="deleted-file">
−
src/main/java/picard/illumina/parser/FourChannelIntensityData.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#3d226ee21322a8c38428ca7889d26099c1bac15d">
src/main/java/picard/illumina/parser/IlluminaData.java
</a>
</li>
<li class="file-stats">
<a href="#3f586535541951e4a364bbc04b2891adb85930fd">
src/main/java/picard/illumina/parser/ReadData.java
</a>
</li>
<li class="file-stats">
<a href="#71cfe8301c6ffbf3a0d8c4e7f06d8d7bbab2d6cd">
src/main/java/picard/sam/BuildBamIndex.java
</a>
</li>
<li class="file-stats">
<a href="#1b665c5e0a5fc18aea02668714885fae5d776aea">
src/main/java/picard/sam/SamErrorMetric/CollectSamErrorMetrics.java
</a>
</li>
<li class="file-stats">
<a href="#dfce5d14fe42247461ea8220e644d29cb15ce7a7">
src/main/java/picard/sam/SamErrorMetric/ReadBaseStratification.java
</a>
</li>
<li class="file-stats">
<a href="#a6846a3645e1f6b1318cc73c0d6fd268c2c97997">
src/main/java/picard/sam/ValidateSamFile.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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