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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/vdjtools">Debian Med / vdjtools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/vdjtools/-/commit/9024e8d2409fdd52fe367792766ec5ac69e9f89c">9024e8d2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-13T11:33:21+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">cme fix dpkg-control
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vdjtools/-/commit/65dd022b363d34433e7c1019f91707cc663cb1fe">65dd022b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-13T11:35:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing Depends to provide java command
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vdjtools/-/commit/90ed940282872a018a8bb6180cb1167db062e94c">90ed9402</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-13T11:35:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vdjtools/-/commit/c55191325c7d0abb3526d125e55deb79d4d7cf9e">c5519132</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-13T11:35:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: No tab in license text
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vdjtools/-/commit/9e49b9e3ecd01072c84d577bb8a0d6799a24bc1e">9e49b9e3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-13T11:35:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/vdjtools/-/commit/5a0d0c25eda13e9650679d4d2f7fe542ad424f0b">5a0d0c25</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-13T11:42:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/vdjtools/-/compare/edd8092a9cf69fed0d1836d61c4835359b4f1690...5a0d0c25eda13e9650679d4d2f7fe542ad424f0b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">vdjtools (1.2.1+git20190311-4) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * cme fix dpkg-control</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Add missing Depends to provide java command</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> Closes: #979760</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Add salsa-ci file (routine-update)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * No tab in license text (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> Repository-Browse.</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Wed, 13 Jan 2021 11:35:59 +0100</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">vdjtools (1.2.1+git20190311-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> * Transfer vdjtools from Java to Debian Med team</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/vdjtools/-/compare/edd8092a9cf69fed0d1836d61c4835359b4f1690...5a0d0c25eda13e9650679d4d2f7fe542ad424f0b#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: vdjtools</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Section: non-free/science</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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5
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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org>,</span>
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6
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> tony mancill <tmancill@debian.org></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13), default-jdk, gradle, gradle-debian-helper, maven-repo-helper</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Section: non-free/science</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">XS-Autobuild: no</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> default-jdk,</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> gradle,</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> gradle-debian-helper,</span>
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<td class="diff-line-num new old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> maven-repo-helper</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Build-Depends-Indep: groovy,</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> libcommons-cli-java (>= 1.4), libcommons-io-java (>= 2.6), libcommons-lang3-java (>= 3.7),</span>
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<td class="diff-line-num old old_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
10
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> libgpars-groovy-java (>= 1.2.1), libmaven-shade-plugin-java (>= 3.1.0),</span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> libmilib-java (>= 1.8.4),</span>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> libcommons-math3-java,</span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> libtrove3-java,</span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> junit4</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> libcommons-cli-java (>= 1.4),</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> libcommons-io-java (>= 2.6),</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> libcommons-lang3-java (>= 3.7),</span>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> libgpars-groovy-java (>= 1.2.1),</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> libmaven-shade-plugin-java (>= 3.1.0),</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> libmilib-java,</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> libcommons-math3-java,</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> libtrove3-java,</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> junit4</span>
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15
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Standards-Version: 4.5.1</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/vdjtools.git</span>
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17
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/vdjtools</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/vdjtools.git</span>
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18
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Homepage: https://github.com/mikessh/vdjtools</span>
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19
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27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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20
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28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,12 +38,24 @@ Description: Java library of vdjtools</td>
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext">Package: vdjtools</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">Architecture: all</span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">Depends: ${misc:Depends}, libvdjtools-java</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext">Recommends: r-cran-ape, r-cran-ggplot2, r-cran-gplots, r-cran-mass,</span>
</pre>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> r-cran-plotrix, r-cran-rcolorbrewer, r-cran-reshape, r-cran-reshape2,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> r-cran-scales,</span>
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<td class="diff-line-num old old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
37
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<td class="diff-line-num new_line old" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> r-cran-gridbase, r-cran-gridextra,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> r-cran-circlize, r-cran-venndiagram, r-cran-ffield</span>
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<td class="diff-line-num new old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> ${java:Depends},</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> libvdjtools-java,</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> default-jre | java-runtime</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">Recommends: r-cran-ape,</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> r-cran-ggplot2,</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> r-cran-gplots,</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> r-cran-mass,</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> r-cran-plotrix,</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> r-cran-rcolorbrewer,</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> r-cran-reshape,</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> r-cran-reshape2,</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> r-cran-scales,</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> r-cran-gridbase,</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> r-cran-gridextra,</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> r-cran-circlize,</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> r-cran-venndiagram,</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> r-cran-ffield</span>
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39
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59
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext">Description: framework for post-analysis of B/T cell repertoires</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> VDJtools is an open-source Java/Groovy-based framework designed</span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> to facilitate analysis of immune repertoire sequencing (RepSeq)</span>
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<a href="https://salsa.debian.org/med-team/vdjtools/-/compare/edd8092a9cf69fed0d1836d61c4835359b4f1690...5a0d0c25eda13e9650679d4d2f7fe542ad424f0b#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +9,7 @@ License: non-free</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Copyright: 2018-2020, Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"><span class="idiff left right"> </span> 2020, tony mancill <tmancill@debian.org></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"><span class="idiff left right"> </span> 2020, tony mancill <tmancill@debian.org></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">License: non-free</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">License: non-free</span>
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<a href="https://salsa.debian.org/med-team/vdjtools/-/compare/edd8092a9cf69fed0d1836d61c4835359b4f1690...5a0d0c25eda13e9650679d4d2f7fe542ad424f0b#b1dbf22e88351ec0d5d1d1a7f53295504b480e61"><strong>debian/salsa-ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/vdjtools/-/compare/edd8092a9cf69fed0d1836d61c4835359b4f1690...5a0d0c25eda13e9650679d4d2f7fe542ad424f0b#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Bug-Database: https://github.com/mikessh/vdjtools/issues</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Bug-Submit: https://github.com/mikessh/vdjtools/issues/new</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Author: ></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> M Shugay and D.V. Bagaev and M.A. Turchaninova and D.A. Bolotin</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,3 +27,5 @@ Registry:</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> Entry: NA</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> - Name: SciCrunch</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> Entry: NA</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">Repository: https://github.com/mikessh/vdjtools.git</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">Repository-Browse: https://github.com/mikessh/vdjtools</span></pre>
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