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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/seqkit">Debian Med / seqkit</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12">8fdd687f</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-01-14T16:34:12+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.15.0+ds</pre>
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<h4>15 changed files:</h4>
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#7cdca301cbb4c2d5233c0eed1f6571d394148920">
doc/docs/download.md
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<a href="#25d4d7cf2f9cbc5b638136ee9d4049b6096fcba9">
doc/docs/usage.md
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<a href="#c47645c391ad0571c40779079363c9d48412e18b">
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+
go.mod
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<a href="#5aa1ac64de2b0c4821af9393b44965020e4a521d">
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+
go.sum
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<li class="file-stats">
<a href="#6aac2ac8b11e949fae92fe504b39efb74c521140">
seqkit/cmd/amplicon.go
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<li class="file-stats">
<a href="#b0f905ee92b1b9b32f1253d44d040463bc4df7b0">
seqkit/cmd/bam_toolbox.go
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<li class="file-stats">
<a href="#a02b528e8138ab6ad3eae788206eb69181c130ba">
seqkit/cmd/grep.go
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<a href="#da9f919e44db345f43e899023ccde1e429864c15">
seqkit/cmd/locate.go
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<li class="file-stats">
<a href="#2672fa4e0f4cd13ef74ee291c22cde12985ef65b">
seqkit/cmd/seq.go
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<a href="#1d415668e438829ee466a5e6b51f9c42ca064b0c">
seqkit/cmd/shuffle.go
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<a href="#34b4c1c21d7f344c5a8a84e1a21a08c2f8760f04">
seqkit/cmd/split2.go
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<a href="#9b440ae881620aea38a06351cb2ab92f966a94f0">
seqkit/cmd/version.go
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<a href="#fa7d2483a5b8da094bcf09750b12a81c8498d79a">
seqkit/packaging.sh
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<a href="#08f4007a2dcdd77b75167cfe678d33d187bd0572">
tests/test.sh
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<h4>Changes:</h4>
<li id="7facec255884dc55d3818e4dfbea89b1bdd7f49e">
<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#7facec255884dc55d3818e4dfbea89b1bdd7f49e"><strong>CHANGES.md</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1" class="line" lang="markdown"><span class="p">-</span> <span class="p">[</span><span class="nv" style="color: #008080;">SeqKit v0.15.0</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/tag/v0.15.0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2" class="line" lang="markdown"><span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Release)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/v0.15.0/total.svg</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/tag/v0.15.0)</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit grep/locate`</span>: update help message.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit grep`</span>: <span class="gs" style="font-weight: 600;">**search on both strand when searching by sequence**</span>.</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit split2`</span>: fix redundant log when using <span class="sb" style="color: #d14;">`-s`</span>.</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit bam`</span>: new field <span class="sb" style="color: #d14;">`RightSoftClipSeq`</span>. <span class="p">[</span><span class="nv" style="color: #008080;">#172</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/pull/172</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit sample -2`</span>: remove extra <span class="sb" style="color: #d14;">`\n`</span>. <span class="p">[</span><span class="nv" style="color: #008080;">#173</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/173</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit split2 -l`</span>: fix bug for splitting by accumulative length, this bug occurs when the first record is longer than <span class="sb" style="color: #d14;">`-l`</span>, no sequences are lost.</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="markdown"><span class="p">-</span> <span class="p">[</span><span class="nv" style="color: #008080;">SeqKit v0.14.0</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/tag/v0.14.0</span><span class="p">)</span></span>
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10
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="markdown"><span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Release)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/v0.14.0/total.svg</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/tag/v0.14.0)</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="markdown"><span class="p"> -</span> new command <span class="sb" style="color: #d14;">`seqkit pair`</span>: match up paired-end reads from two fastq files, faster than fastq-pair.</span>
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<li id="7cdca301cbb4c2d5233c0eed1f6571d394148920">
<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#7cdca301cbb4c2d5233c0eed1f6571d394148920"><strong>doc/docs/download.md</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,17 +6,14 @@ SeqKit is implemented in [Go](https://golang.org/) programming language,</td>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Latest Version</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="markdown"><span class="p">-</span> <span class="p">[</span><span class="nv" style="color: #008080;">SeqKit v0.14.0</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/tag/v0.14.0</span><span class="p">)</span></span>
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10
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<td class="diff-line-num new_line old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="markdown"><span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Release)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/v0.14.0/total.svg</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/tag/v0.14.0)</span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="markdown"><span class="p"> -</span> new command <span class="sb" style="color: #d14;">`seqkit pair`</span>: match up paired-end reads from two fastq files, faster than fastq-pair.</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit translate`</span>: new flag <span class="sb" style="color: #d14;">`-F/--append-fram`</span> for optional adding frame info to ID. <span class="p">[</span><span class="nv" style="color: #008080;">#159</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/159</span><span class="p">)</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit stats`</span>: reduce memory usage when using <span class="sb" style="color: #d14;">`-a`</span> for calculating N50. <span class="p">[</span><span class="nv" style="color: #008080;">#153</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/153</span><span class="p">)</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit mutate`</span>: fix inserting sequence <span class="sb" style="color: #d14;">`-i/--insertion`</span>, </span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="markdown"> this bug occurs when <span class="sb" style="color: #d14;">`insert site`</span> is big in some cases, don't worry if no error reported.</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit replace`</span>:</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="markdown"><span class="p"> -</span> new flag <span class="sb" style="color: #d14;">`-U/--keep-untouched`</span>: do not change anything when no value found for the key (only for sequence name).</span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="markdown"><span class="p"> -</span> do no support editing FASTQ sequence.</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit grep/locate`</span>: new flag <span class="sb" style="color: #d14;">`--circular`</span> for supporting circular genome. <span class="p">[</span><span class="nv" style="color: #008080;">#158</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/158</span><span class="p">)</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="markdown"><span class="p">-</span> <span class="p">[</span><span class="nv" style="color: #008080;">SeqKit v0.15.0</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/tag/v0.15.0</span><span class="p">)</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="markdown"><span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Release)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/v0.15.0/total.svg</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/tag/v0.15.0)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit grep/locate`</span>: update help message.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit grep`</span>: <span class="gs" style="font-weight: 600;">**search on both strand when searching by sequence**</span>.</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit split2`</span>: fix redundant log when using <span class="sb" style="color: #d14;">`-s`</span>.</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit bam`</span>: new field <span class="sb" style="color: #d14;">`RightSoftClipSeq`</span>. <span class="p">[</span><span class="nv" style="color: #008080;">#172</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/pull/172</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit sample -2`</span>: remove extra <span class="sb" style="color: #d14;">`\n`</span>. <span class="p">[</span><span class="nv" style="color: #008080;">#173</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/173</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit split2 -l`</span>: fix bug for splitting by accumulative length, this bug occurs when the first record is longer than <span class="sb" style="color: #d14;">`-l`</span>, no sequences are lost.</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">### Please cite</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="markdown"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,12 +30,13 @@ SeqKit is implemented in [Go](https://golang.org/) programming language,</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="markdown">OS |Arch |File, 中国镜像 |Download Count</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="markdown">:------|:---------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="markdown">Linux |32-bit |<span class="p">[</span><span class="nv" style="color: #008080;">seqkit_linux_386.tar.gz</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_linux_386.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_linux_386.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_386.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_linux_386.tar.gz)</span>
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<td class="diff-line-num old old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
37
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<td class="diff-line-num new_line old" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="markdown">Linux |<span class="gs" style="font-weight: 600;">**64-bit**</span>|<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_linux_amd64.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_linux_amd64.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_linux_amd64.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_amd64.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_linux_amd64.tar.gz)</span>
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38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="markdown">OS X |32-bit |<span class="p">[</span><span class="nv" style="color: #008080;">seqkit_darwin_386.tar.gz</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_darwin_386.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_darwin_386.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_386.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_darwin_386.tar.gz)</span>
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39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="markdown">OS X |<span class="gs" style="font-weight: 600;">**64-bit**</span>|<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_darwin_amd64.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_darwin_amd64.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_darwin_amd64.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_amd64.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_darwin_amd64.tar.gz)</span>
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40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="markdown">Windows|32-bit |<span class="p">[</span><span class="nv" style="color: #008080;">seqkit_windows_386.exe.tar.gz</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_windows_386.exe.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_windows_386.exe.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_386.exe.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_windows_386.exe.tar.gz)</span>
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41
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="markdown">Windows|<span class="gs" style="font-weight: 600;">**64-bit**</span>|<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_windows_amd64.exe.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_windows_amd64.exe.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_windows_amd64.exe.tar.gz</span><span class="p">)</span>|<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_amd64.exe.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.14.0/seqkit_windows_amd64.exe.tar.gz)</span>
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<td class="diff-line-num new new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="markdown">Linux |32-bit |<span class="p">[</span><span class="nv" style="color: #008080;">seqkit_linux_386.tar.gz</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_linux_386.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_linux_386.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_386.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_linux_386.tar.gz)</span>
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<td class="diff-line-num new new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="markdown">Linux |<span class="gs" style="font-weight: 600;">**64-bit**</span>|<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_linux_amd64.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_linux_amd64.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_linux_amd64.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_amd64.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_linux_amd64.tar.gz)</span>
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<td class="diff-line-num new new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="markdown">Linux |<span class="gs" style="font-weight: 600;">**arm64**</span> |<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_linux_arm64.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_linux_arm64.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_linux_arm64.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_linux_arm64.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_linux_arm64.tar.gz)</span>
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<td class="diff-line-num new new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="markdown">macOS |<span class="gs" style="font-weight: 600;">**64-bit**</span>|<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_darwin_amd64.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_darwin_amd64.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_darwin_amd64.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_amd64.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_darwin_amd64.tar.gz)</span>
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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="markdown">macOS |<span class="gs" style="font-weight: 600;">**arm64**</span> |<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_darwin_arm64.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_darwin_arm64.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_darwin_arm64.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_darwin_arm64.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_darwin_arm64.tar.gz)</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="markdown">Windows|32-bit |<span class="p">[</span><span class="nv" style="color: #008080;">seqkit_windows_386.exe.tar.gz</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_windows_386.exe.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_windows_386.exe.tar.gz</span><span class="p">)</span> |<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_386.exe.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_windows_386.exe.tar.gz)</span>
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="markdown">Windows|<span class="gs" style="font-weight: 600;">**64-bit**</span>|<span class="p">[</span><span class="nv" style="color: #008080;">**seqkit_windows_amd64.exe.tar.gz**</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_windows_amd64.exe.tar.gz</span><span class="p">)</span>, <span class="nt" style="color: #000080;"><br/></span> <span class="p">[</span><span class="nv" style="color: #008080;">中国镜像</span><span class="p">](</span><span class="sx" style="color: #d14;">http://app.shenwei.me/data/seqkit/seqkit_windows_amd64.exe.tar.gz</span><span class="p">)</span>|<span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Asset)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/latest/seqkit_windows_amd64.exe.tar.gz.svg?maxAge=3600</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/download/v0.15.0/seqkit_windows_amd64.exe.tar.gz)</span>
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42
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Installation</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,6 +106,17 @@ Howto:</td>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="markdown"><span class="gu" style="color: #800080; font-weight: 600;">## Release History</span></span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="markdown"><span class="p">-</span> <span class="p">[</span><span class="nv" style="color: #008080;">SeqKit v0.14.0</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/tag/v0.14.0</span><span class="p">)</span></span>
</pre>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="markdown"><span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Release)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/v0.14.0/total.svg</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/tag/v0.14.0)</span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="markdown"><span class="p"> -</span> new command <span class="sb" style="color: #d14;">`seqkit pair`</span>: match up paired-end reads from two fastq files, faster than fastq-pair.</span>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit translate`</span>: new flag <span class="sb" style="color: #d14;">`-F/--append-fram`</span> for optional adding frame info to ID. <span class="p">[</span><span class="nv" style="color: #008080;">#159</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/159</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit stats`</span>: reduce memory usage when using <span class="sb" style="color: #d14;">`-a`</span> for calculating N50. <span class="p">[</span><span class="nv" style="color: #008080;">#153</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/153</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit mutate`</span>: fix inserting sequence <span class="sb" style="color: #d14;">`-i/--insertion`</span>, </span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="markdown"> this bug occurs when <span class="sb" style="color: #d14;">`insert site`</span> is big in some cases, don't worry if no error reported.</span>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit replace`</span>:</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="markdown"><span class="p"> -</span> new flag <span class="sb" style="color: #d14;">`-U/--keep-untouched`</span>: do not change anything when no value found for the key (only for sequence name).</span>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="markdown"><span class="p"> -</span> do no support editing FASTQ sequence.</span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit grep/locate`</span>: new flag <span class="sb" style="color: #d14;">`--circular`</span> for supporting circular genome. <span class="p">[</span><span class="nv" style="color: #008080;">#158</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/issues/158</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
111
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<td class="diff-line-num new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="markdown"><span class="p">-</span> <span class="p">[</span><span class="nv" style="color: #008080;">SeqKit v0.13.2</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/releases/tag/v0.13.2</span><span class="p">)</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="markdown"><span class="p">[</span><span class="nv" style="color: #008080;">![Github Releases (by Release)</span><span class="p">](</span><span class="sx" style="color: #d14;">https://img.shields.io/github/downloads/shenwei356/seqkit/v0.13.2/total.svg</span><span class="p">)</span>](https://github.com/shenwei356/seqkit/releases/tag/v0.13.2)</span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="markdown"><span class="p"> -</span> <span class="sb" style="color: #d14;">`seqkit sana`</span>: fix bug causing hanging on empty files. <span class="p">[</span><span class="nv" style="color: #008080;">#149</span><span class="p">](</span><span class="sx" style="color: #d14;">https://github.com/shenwei356/seqkit/pull/149</span><span class="p">)</span></span>
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<li id="25d4d7cf2f9cbc5b638136ee9d4049b6096fcba9">
<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#25d4d7cf2f9cbc5b638136ee9d4049b6096fcba9"><strong>doc/docs/usage.md</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,7 +174,7 @@ reproduced in different environments with same random seed.</td>
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="markdown"><span class="p">```</span><span class="nl"> text</span></span>
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="markdown">SeqKit -- a cross-platform and ultrafast toolkit for FASTA/Q file manipulation</span>
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="markdown">Version: 0.1<span class="idiff left right">4</span>.0</span>
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="markdown">Version: 0.1<span class="idiff left right">5</span>.0</span>
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="markdown">Author: Wei Shen <shenwei356@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="markdown"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -283,6 +283,11 @@ Usage</td>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="markdown"><span class="p">```</span><span class="nl"> text</span></span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="markdown">transform sequences (revserse, complement, extract ID...)</span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="markdown">Attentions:</span>
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="markdown"> 1. This command outputs plain text even when out file ends with ".gz".</span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="markdown"></span>
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="markdown">Usage:</span>
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<pre style="margin: 0;"> <span id="LC292" class="line" lang="markdown"> seqkit seq [flags]</span>
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<pre style="margin: 0;"> <span id="LC293" class="line" lang="markdown"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1372,12 +1377,20 @@ Attentions:</td>
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<pre style="margin: 0;"> <span id="LC1377" class="line" lang="markdown"> 1. Unlike POSIX/GNU grep, we compare the pattern to the whole target</span>
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<pre style="margin: 0;"> <span id="LC1378" class="line" lang="markdown"> (ID/full header) by default. Please switch "-r/--use-regexp" on</span>
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<pre style="margin: 0;"> <span id="LC1379" class="line" lang="markdown"> for partly matching.</span>
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<pre style="margin: 0;">-<span id="LC1375" class="line" lang="markdown"> 2. Wh<span class="idiff left right">ile when searching by sequences, only positive strand is searched,</span></span>
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1376
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<pre style="margin: 0;">-<span id="LC1376" class="line" lang="markdown"> and <span class="idiff left right">it's partly matching. </span></span>
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<pre style="margin: 0;">+<span id="LC1380" class="line" lang="markdown"> 2. Wh<span class="idiff left right">en searching by sequences, it's partly matching, and both positive</span></span>
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<pre style="margin: 0;">+<span id="LC1381" class="line" lang="markdown"> and <span class="idiff left right">negative strands are searched.</span></span>
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<pre style="margin: 0;"> <span id="LC1382" class="line" lang="markdown"> Mismatch is allowed using flag "-m/--max-mismatch",</span>
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<pre style="margin: 0;"> <span id="LC1383" class="line" lang="markdown"> but it's not fast enough for large genome like human genome.</span>
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<pre style="margin: 0;"> <span id="LC1384" class="line" lang="markdown"> Though, it's fast enough for microbial genomes.</span>
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<pre style="margin: 0;">-<span id="LC1380" class="line" lang="markdown"> 3. The order of sequences in result is consistent with that in original</span>
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<pre style="margin: 0;">+<span id="LC1385" class="line" lang="markdown"> 3. Degenerate bases/residues like "RYMM.." are also supported by flag -d.</span>
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<pre style="margin: 0;">+<span id="LC1386" class="line" lang="markdown"> But do not use degenerate bases/residues in regular expression, you need</span>
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<pre style="margin: 0;">+<span id="LC1387" class="line" lang="markdown"> convert them to regular expression, e.g., change "N" or "X" to ".".</span>
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<pre style="margin: 0;">+<span id="LC1388" class="line" lang="markdown"> 4. When providing search patterns (motifs) via flag '-p',</span>
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<pre style="margin: 0;">+<span id="LC1389" class="line" lang="markdown"> please use double quotation marks for patterns containing comma, </span>
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<pre style="margin: 0;">+<span id="LC1390" class="line" lang="markdown"> e.g., -p '"A{2,}"' or -p "\"A{2,}\"". Because the command line argument</span>
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<pre style="margin: 0;">+<span id="LC1391" class="line" lang="markdown"> parser accepts comma-separated-values (CSV) for multiple values (motifs).</span>
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<pre style="margin: 0;">+<span id="LC1392" class="line" lang="markdown"> Patterns in file do not follow this rule.</span>
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<pre style="margin: 0;">+<span id="LC1393" class="line" lang="markdown"> 5. The order of sequences in result is consistent with that in original</span>
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<pre style="margin: 0;"> <span id="LC1394" class="line" lang="markdown"> file, not the order of the query patterns. </span>
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<pre style="margin: 0;"> <span id="LC1395" class="line" lang="markdown"> But for FASTA file, you can use:</span>
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<pre style="margin: 0;"> <span id="LC1396" class="line" lang="markdown"> seqkit faidx seqs.fasta --infile-list IDs.txt</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1404,26 +1417,27 @@ Usage:</td>
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<pre style="margin: 0;"> <span id="LC1417" class="line" lang="markdown"> seqkit grep [flags]</span>
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<pre style="margin: 0;"> <span id="LC1418" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC1419" class="line" lang="markdown">Flags:</span>
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<pre style="margin: 0;">-<span id="LC1407" class="line" lang="markdown"> -n, --by-name match by full name instead of just ID</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1408
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1408" class="line" lang="markdown"> -s, --by-seq search subseq on seq, only positive strand is searched, and mismatch allowed using flag -m/--max-mismatch</span>
</pre>
</td>
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<td class="diff-line-num old old_line" data-linenumber="1409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1409
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1409" class="line" lang="markdown"> -c --circular circular genome</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1410
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1410" class="line" lang="markdown"> -d, --degenerate pattern/motif contains degenerate base</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1411
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1411" class="line" lang="markdown"> --delete-matched delete a pattern right after being matched, this keeps the firstly matched data and speedups when using regular expressions</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1412
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1412" class="line" lang="markdown"> -h, --help help for grep</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1413
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1413" class="line" lang="markdown"> -i, --ignore-case ignore case</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1414
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1414" class="line" lang="markdown"> -v, --invert-match invert the sense of matching, to select non-matching records</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1415
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1415" class="line" lang="markdown"> -m, --max-mismatch int max mismatch when matching by seq. For large genomes like human genome, using mapping/alignment tools would be faster</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1416
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1416" class="line" lang="markdown"> -p, --pattern strings search pattern (multiple values supported. Attention: use double quotation marks for patterns containing comma, e.g., -p '"A{2,}"'))</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1417
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1417" class="line" lang="markdown"> -f, --pattern-file string pattern file (one record per line)</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1418
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1418" class="line" lang="markdown"> -R, --region string specify sequence region for searching. e.g 1:12 for first 12 bases, -12:-1 for last 12 bases</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1419
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<td class="diff-line-num new_line old" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1419" class="line" lang="markdown"> -r, --use-regexp patterns are regular expressio</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1420
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<pre style="margin: 0;">+<span id="LC1420" class="line" lang="markdown"> -n, --by-name match by full name instead of just ID</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1421
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<pre style="margin: 0;">+<span id="LC1421" class="line" lang="markdown"> -s, --by-seq search subseq on seq, both positive and negative strand are searched, and mismatch allowed using flag -m/--max-mismatch</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1422
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<pre style="margin: 0;">+<span id="LC1422" class="line" lang="markdown"> -c, --circular circular genome</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1423
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<pre style="margin: 0;">+<span id="LC1423" class="line" lang="markdown"> -d, --degenerate pattern/motif contains degenerate base</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1424
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<pre style="margin: 0;">+<span id="LC1424" class="line" lang="markdown"> --delete-matched delete a pattern right after being matched, this keeps the firstly matched data and speedups when using regular expressions</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1425
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<pre style="margin: 0;">+<span id="LC1425" class="line" lang="markdown"> -h, --help help for grep</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1426
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<pre style="margin: 0;">+<span id="LC1426" class="line" lang="markdown"> -i, --ignore-case ignore case</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1427
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<pre style="margin: 0;">+<span id="LC1427" class="line" lang="markdown"> -v, --invert-match invert the sense of matching, to select non-matching records</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1428
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<pre style="margin: 0;">+<span id="LC1428" class="line" lang="markdown"> -m, --max-mismatch int max mismatch when matching by seq. For large genomes like human genome, using mapping/alignment tools would be faster</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1429
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<pre style="margin: 0;">+<span id="LC1429" class="line" lang="markdown"> -P, --only-positive-strand only search on positive strand</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="1430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1430
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<pre style="margin: 0;">+<span id="LC1430" class="line" lang="markdown"> -p, --pattern strings search pattern (multiple values supported. Attention: use double quotation marks for patterns containing comma, e.g., -p '"A{2,}"'))</span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1431
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<pre style="margin: 0;">+<span id="LC1431" class="line" lang="markdown"> -f, --pattern-file string pattern file (one record per line)</span>
</pre>
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</td>
<td class="diff-line-num new new_line" data-linenumber="1432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1432" class="line" lang="markdown"> -R, --region string specify sequence region for searching. e.g 1:12 for first 12 bases, -12:-1 for last 12 bases</span>
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<pre style="margin: 0;">+<span id="LC1433" class="line" lang="markdown"> -r, --use-regexp patterns are regular expression</span>
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<pre style="margin: 0;"> <span id="LC1434" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC1435" class="line" lang="markdown"><span class="p">```</span></span>
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<pre style="margin: 0;"> <span id="LC1436" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC1437" class="line" lang="markdown">Examples</span>
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1438
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<pre style="margin: 0;"> <span id="LC1438" class="line" lang="markdown"></span>
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1439
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<pre style="margin: 0;"> <span id="LC1439" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC1426" class="line" lang="markdown"><span class="p">1.</span> Searching with list of sequence IDs (do not contain<span class="idiff left right">ing</span> whitespace)</span>
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<pre style="margin: 0;">+<span id="LC1440" class="line" lang="markdown"><span class="p">1.</span> Searching with list of sequence IDs (do not contain whitespace)</span>
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<pre style="margin: 0;"> <span id="LC1441" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC1442" class="line" lang="markdown"><span class="sb" style="color: #d14;"> $ seqkit grep -f id.txt seqs.fq.gz -o result.fq.gz</span></span>
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<pre style="margin: 0;"> <span id="LC1443" class="line" lang="markdown"><span class="sb" style="color: #d14;"> </span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1526,20 +1540,23 @@ Usage</td>
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<pre style="margin: 0;"> <span id="LC1540" class="line" lang="markdown"><span class="p">```</span><span class="nl"> text</span></span>
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<pre style="margin: 0;"> <span id="LC1541" class="line" lang="markdown">locate subsequences/motifs, mismatch allowed</span>
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<pre style="margin: 0;"> <span id="LC1542" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC1529" class="line" lang="markdown">Motifs could be EITHER plain sequence containing "ACTGN" OR regular</span>
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<pre style="margin: 0;">-<span id="LC1530" class="line" lang="markdown">expression like "A[TU]G(?:.{3})+?[TU](?:AG|AA|GA)" for ORFs.</span>
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<pre style="margin: 0;">-<span id="LC1531" class="line" lang="markdown">Degenerate bases like "RYMM.." are also supported by flag -d.</span>
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<pre style="margin: 0;">-<span id="LC1532" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC1533" class="line" lang="markdown">By default, motifs are treated as regular expression.</span>
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<pre style="margin: 0;">-<span id="LC1534" class="line" lang="markdown">When flag -d given, regular expression may be wrong.</span>
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<pre style="margin: 0;">-<span id="LC1535" class="line" lang="markdown">For example: "\w" will be wrongly converted to "\[AT]".</span>
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<pre style="margin: 0;">-<span id="LC1536" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC1537" class="line" lang="markdown">Mismatch is allowed using flag "-m/--max-mismatch",</span>
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<pre style="margin: 0;">-<span id="LC1538" class="line" lang="markdown">but it's not fast enough for large genome like human genome.</span>
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<pre style="margin: 0;">-<span id="LC1539" class="line" lang="markdown">Though, it's fast enough for microbial genomes.</span>
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<pre style="margin: 0;">+<span id="LC1543" class="line" lang="markdown">Attentions:</span>
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1544
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<pre style="margin: 0;"> <span id="LC1544" class="line" lang="markdown"></span>
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<pre style="margin: 0;">-<span id="LC1541" class="line" lang="markdown">When using flag --circular, end position of matched subsequence that </span>
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<pre style="margin: 0;">-<span id="LC1542" class="line" lang="markdown">crossing genome sequence end would be greater than sequence length.</span>
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<pre style="margin: 0;">+<span id="LC1545" class="line" lang="markdown"> 1. Motifs could be EITHER plain sequence containing "ACTGN" OR regular</span>
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<pre style="margin: 0;">+<span id="LC1546" class="line" lang="markdown"> expression like "A[TU]G(?:.{3})+?[TU](?:AG|AA|GA)" for ORFs. </span>
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<pre style="margin: 0;">+<span id="LC1547" class="line" lang="markdown"> 2. Degenerate bases/residues like "RYMM.." are also supported by flag -d.</span>
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<pre style="margin: 0;">+<span id="LC1548" class="line" lang="markdown"> But do not use degenerate bases/residues in regular expression, you need</span>
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<pre style="margin: 0;">+<span id="LC1549" class="line" lang="markdown"> convert them to regular expression, e.g., change "N" or "X" to ".".</span>
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<pre style="margin: 0;">+<span id="LC1550" class="line" lang="markdown"> 3. When providing search patterns (motifs) via flag '-p',</span>
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<pre style="margin: 0;">+<span id="LC1551" class="line" lang="markdown"> please use double quotation marks for patterns containing comma, </span>
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<pre style="margin: 0;">+<span id="LC1552" class="line" lang="markdown"> e.g., -p '"A{2,}"' or -p "\"A{2,}\"". Because the command line argument</span>
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<pre style="margin: 0;">+<span id="LC1553" class="line" lang="markdown"> parser accepts comma-separated-values (CSV) for multiple values (motifs).</span>
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<pre style="margin: 0;">+<span id="LC1554" class="line" lang="markdown"> Patterns in file do not follow this rule. </span>
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<pre style="margin: 0;">+<span id="LC1555" class="line" lang="markdown"> 4. Mismatch is allowed using flag "-m/--max-mismatch",</span>
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<pre style="margin: 0;">+<span id="LC1556" class="line" lang="markdown"> but it's not fast enough for large genome like human genome.</span>
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<pre style="margin: 0;">+<span id="LC1557" class="line" lang="markdown"> Though, it's fast enough for microbial genomes.</span>
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<pre style="margin: 0;">+<span id="LC1558" class="line" lang="markdown"> 5. When using flag --circular, end position of matched subsequence that </span>
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<pre style="margin: 0;">+<span id="LC1559" class="line" lang="markdown"> crossing genome sequence end would be greater than sequence length.</span>
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<pre style="margin: 0;"> <span id="LC1560" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC1561" class="line" lang="markdown">Usage:</span>
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<pre style="margin: 0;"> <span id="LC1562" class="line" lang="markdown"> seqkit locate [flags]</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1777" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1760,6 +1777,9 @@ retrieve amplicon (or specific region around it) via primer(s).</td>
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<pre style="margin: 0;"> <span id="LC1777" class="line" lang="markdown">Attentions:</span>
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1778
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<pre style="margin: 0;"> <span id="LC1778" class="line" lang="markdown"> 1. Only one (the longest) matching location is returned for every primer pair.</span>
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1762
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<pre style="margin: 0;"> <span id="LC1779" class="line" lang="markdown"> 2. Mismatch is allowed, but the mismatch location (5' or 3') is not controled. </span>
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1780
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<pre style="margin: 0;">+<span id="LC1780" class="line" lang="markdown"> 3. Degenerate bases/residues like "RYMM.." are also supported.</span>
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1781
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<pre style="margin: 0;">+<span id="LC1781" class="line" lang="markdown"> But do not use degenerate bases/residues in regular expression, you need</span>
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1782
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<pre style="margin: 0;">+<span id="LC1782" class="line" lang="markdown"> convert them to regular expression, e.g., change "N" or "X" to ".".</span>
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1763
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1783
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<pre style="margin: 0;"> <span id="LC1783" class="line" lang="markdown"></span>
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1764
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1784
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<pre style="margin: 0;"> <span id="LC1784" class="line" lang="markdown">Examples:</span>
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1765
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1785
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<pre style="margin: 0;"> <span id="LC1785" class="line" lang="markdown"> 0. no region given.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1809" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1829" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1809,16 +1829,17 @@ Usage:</td>
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1809
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1829
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<pre style="margin: 0;"> <span id="LC1829" class="line" lang="markdown"> seqkit amplicon [flags]</span>
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1810
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1830
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<pre style="margin: 0;"> <span id="LC1830" class="line" lang="markdown"></span>
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1811
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1831
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<pre style="margin: 0;"> <span id="LC1831" class="line" lang="markdown">Flags:</span>
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1812
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<pre style="margin: 0;">-<span id="LC1812" class="line" lang="markdown"> --bed output in BED6+1 format with amplicon as 7th column</span>
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1832
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<pre style="margin: 0;">+<span id="LC1832" class="line" lang="markdown"> --bed output in BED6+1 format with amplicon as 7th column<span class="idiff left right">s</span></span>
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1813
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<pre style="margin: 0;"> <span id="LC1833" class="line" lang="markdown"> -f, --flanking-region region is flanking region</span>
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1814
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<pre style="margin: 0;">-<span id="LC1814" class="line" lang="markdown"> -F, --forward string forward primer (5'-primer-3')</span>
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1834
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<pre style="margin: 0;">+<span id="LC1834" class="line" lang="markdown"> -F, --forward string forward primer (5'-primer-3')<span class="idiff left right">, degenerate bases allowed</span></span>
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1815
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<pre style="margin: 0;"> <span id="LC1835" class="line" lang="markdown"> -h, --help help for amplicon</span>
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1816
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<pre style="margin: 0;">-<span id="LC1816" class="line" lang="markdown"> -m, --max-mismatch int max mismatch when matching primers</span>
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1836
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<pre style="margin: 0;">+<span id="LC1836" class="line" lang="markdown"> -m, --max-mismatch int max mismatch when matching primers<span class="idiff left right">, no degenerate bases allowed</span></span>
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1817
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<pre style="margin: 0;"> <span id="LC1837" class="line" lang="markdown"> -P, --only-positive-strand only search on positive strand</span>
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1818
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<pre style="margin: 0;"> <span id="LC1838" class="line" lang="markdown"> -p, --primer-file string 3- or 2-column tabular primer file, with first column as primer name</span>
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1819
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<pre style="margin: 0;"> <span id="LC1839" class="line" lang="markdown"> -r, --region string specify region to return. type "seqkit amplicon -h" for detail</span>
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1820
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<pre style="margin: 0;">-<span id="LC1820" class="line" lang="markdown"> -R, --reverse string reverse primer (5'-primer-3')</span>
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1840
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<pre style="margin: 0;">+<span id="LC1840" class="line" lang="markdown"> -R, --reverse string reverse primer (5'-primer-3')<span class="idiff left right">, degenerate bases allowed</span></span>
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1821
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<pre style="margin: 0;"> <span id="LC1841" class="line" lang="markdown"> -s, --strict-mode strict mode, i.e., discarding seqs not fully matching (shorter) given region range</span>
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<pre style="margin: 0;">+<span id="LC1842" class="line" lang="markdown"></span>
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<pre style="margin: 0;"> <span id="LC1843" class="line" lang="markdown"><span class="p">```</span></span>
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1823
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1844
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<pre style="margin: 0;"> <span id="LC1844" class="line" lang="markdown"></span>
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1845
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<pre style="margin: 0;"> <span id="LC1845" class="line" lang="markdown">Examples</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2181,7 +2202,7 @@ Usage:</td>
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2202
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<pre style="margin: 0;"> <span id="LC2202" class="line" lang="markdown"> seqkit split2 [flags]</span>
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2203
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<pre style="margin: 0;"> <span id="LC2203" class="line" lang="markdown"></span>
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2183
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<pre style="margin: 0;"> <span id="LC2204" class="line" lang="markdown">Flags:</span>
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2184
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<pre style="margin: 0;">-<span id="LC2184" class="line" lang="markdown"> -l, --by-length string split sequences into chunks of N bases, supports K/M/G suffix</span>
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<pre style="margin: 0;">+<span id="LC2205" class="line" lang="markdown"> -l, --by-length string split sequences into chunks of <span class="idiff left right">>=</span>N bases, supports K/M/G suffix</span>
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2185
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2206
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<pre style="margin: 0;"> <span id="LC2206" class="line" lang="markdown"> -p, --by-part int split sequences into N parts</span>
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<pre style="margin: 0;"> <span id="LC2207" class="line" lang="markdown"> -s, --by-size int split sequences into multi parts with N sequences</span>
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2187
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<pre style="margin: 0;"> <span id="LC2208" class="line" lang="markdown"> -f, --force overwrite output directory</span>
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<li id="c47645c391ad0571c40779079363c9d48412e18b">
<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#c47645c391ad0571c40779079363c9d48412e18b"><strong>go.mod</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">module <a href="https://pkg.go.dev/github.com/shenwei356/seqkit" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/seqkit</a></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">go 1.16</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">require (</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/biogo/biogo@v1.0.3" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/biogo</a> v1.0.3</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/biogo/hts@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/hts</a> v1.2.2</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/bsipos/thist@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/bsipos/thist</a> v1.0.0</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/cespare/xxhash@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/cespare/xxhash</a> v1.1.0</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/cznic/mathutil@v0.0.0-20181122101859-297441e03548" rel="nofollow noreferrer noopener" target="_blank">github.com/cznic/mathutil</a> v0.0.0-20181122101859-297441e03548 // indirect</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/cznic/sortutil@v0.0.0-20181122101858-f5f958428db8" rel="nofollow noreferrer noopener" target="_blank">github.com/cznic/sortutil</a> v0.0.0-20181122101858-f5f958428db8</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/dustin/go-humanize@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/dustin/go-humanize</a> v1.0.0</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/edsrzf/mmap-go@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/edsrzf/mmap-go</a> v1.0.0 // indirect</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/fsnotify/fsnotify@v1.4.9" rel="nofollow noreferrer noopener" target="_blank">github.com/fsnotify/fsnotify</a> v1.4.9</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/iafan/cwalk@v0.0.0-20191125092548-dd7f505d2f66" rel="nofollow noreferrer noopener" target="_blank">github.com/iafan/cwalk</a> v0.0.0-20191125092548-dd7f505d2f66</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/klauspost/compress@v1.11.4" rel="nofollow noreferrer noopener" target="_blank">github.com/klauspost/compress</a> v1.11.4 // indirect</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/klauspost/pgzip@v1.2.5" rel="nofollow noreferrer noopener" target="_blank">github.com/klauspost/pgzip</a> v1.2.5 // indirect</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/logrusorgru/aurora@v2.0.3+incompatible" rel="nofollow noreferrer noopener" target="_blank">github.com/logrusorgru/aurora</a> v2.0.3+incompatible</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/mattn/go-colorable@v0.1.8" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-colorable</a> v0.1.8</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/mattn/go-isatty@v0.0.12" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-isatty</a> v0.0.12</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/mattn/go-runewidth@v0.0.9" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-runewidth</a> v0.0.9 // indirect</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/mitchellh/go-homedir@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/go-homedir</a> v1.1.0</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/pkg/errors@v0.9.1" rel="nofollow noreferrer noopener" target="_blank">github.com/pkg/errors</a> v0.9.1</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/remyoudompheng/bigfft@v0.0.0-20200410134404-eec4a21b6bb0" rel="nofollow noreferrer noopener" target="_blank">github.com/remyoudompheng/bigfft</a> v0.0.0-20200410134404-eec4a21b6bb0 // indirect</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/bio@v0.0.0-20201213090627-18e3e643a476" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bio</a> v0.0.0-20201213090627-18e3e643a476</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/bpool@v0.0.0-20160710042833-f9e0ee4d0403" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bpool</a> v0.0.0-20160710042833-f9e0ee4d0403 // indirect</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/breader@v0.0.0-20170924140440-21f0a70fe179" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/breader</a> v0.0.0-20170924140440-21f0a70fe179</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/bwt@v0.0.0-20200418151221-ae79c9858c90" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bwt</a> v0.0.0-20200418151221-ae79c9858c90</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/go-logging@v0.0.0-20171012171522-c6b9702d88ba" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/go-logging</a> v0.0.0-20171012171522-c6b9702d88ba</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/natsort@v0.0.0-20190418160752-600d539c017d" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/natsort</a> v0.0.0-20190418160752-600d539c017d // indirect</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/util@v0.0.0-20201214054755-2942125340cd" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/util</a> v0.0.0-20201214054755-2942125340cd</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/shenwei356/xopen@v0.0.0-20181203091311-f4f16ddd3992" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/xopen</a> v0.0.0-20181203091311-f4f16ddd3992</span>
</pre>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/smallfish/simpleyaml@v0.0.0-20170911015856-a32031077861" rel="nofollow noreferrer noopener" target="_blank">github.com/smallfish/simpleyaml</a> v0.0.0-20170911015856-a32031077861</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/spf13/cobra@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/cobra</a> v1.1.1</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> <a href="https://pkg.go.dev/github.com/tatsushid/go-prettytable@v0.0.0-20141013043238-ed2d14c29939" rel="nofollow noreferrer noopener" target="_blank">github.com/tatsushid/go-prettytable</a> v0.0.0-20141013043238-ed2d14c29939</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">)</span></pre>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#5aa1ac64de2b0c4821af9393b44965020e4a521d"><strong>go.sum</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go@v0.26.0" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go</a> v0.26.0/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go@v0.26.0" rel="nofollow noreferrer noopener" target="_blank">aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw=</a></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go@v0.34.0" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go</a> v0.34.0/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go@v0.34.0" rel="nofollow noreferrer noopener" target="_blank">aQUYkXzVsufM+DwF1aE+0xfcU+56JwCaLick0ClmMTw=</a></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go@v0.38.0" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go</a> v0.38.0/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go@v0.38.0" rel="nofollow noreferrer noopener" target="_blank">990N+gfupTy94rShfmMCWGDn0LpTmnzTp2qbd1dvSRU=</a></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go@v0.44.1" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go</a> v0.44.1/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go@v0.44.1" rel="nofollow noreferrer noopener" target="_blank">iSa0KzasP4Uvy3f1mN/7PiObzGgflwredwwASm/v6AU=</a></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go@v0.44.2" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go</a> v0.44.2/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go@v0.44.2" rel="nofollow noreferrer noopener" target="_blank">60680Gw3Yr4ikxnPRS/oxxkBccT6SA1yMk63TGekxKY=</a></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go@v0.45.1" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go</a> v0.45.1/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go@v0.45.1" rel="nofollow noreferrer noopener" target="_blank">RpBamKRgapWJb87xiFSdk4g1CME7QZg3uwTez+TSTjc=</a></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go@v0.46.3" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go</a> v0.46.3/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go@v0.46.3" rel="nofollow noreferrer noopener" target="_blank">a6bKKbmY7er1mI7TEI4lsAkts/mkhTSZK8w33B4RAg0=</a></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go/bigquery@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go/bigquery</a> v1.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go/bigquery@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">i/xbL2UlR5RvWAURpBYZTtm/cXjCha9lbfbpx4poX+o=</a></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go/datastore@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go/datastore</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go/datastore@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">LXYbyblFSglQ5pkeyhO+Qmw7ukd3C+pD7TKLgZqpHYE=</a></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go/firestore@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go/firestore</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go/firestore@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">ulACoGHTpvq5r8rxGJ4ddJZBZqakUQqClKRT5SZwBmk=</a></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go/pubsub@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go/pubsub</a> v1.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go/pubsub@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">R0Gpsv3s54REJCy4fxDixWD93lHJMoZTyQ2kNxGRt3I=</a></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"><a href="https://pkg.go.dev/cloud.google.com/go/storage@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">cloud.google.com/go/storage</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/cloud.google.com/go/storage@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">IhtSnM/ZTZV8YYJWCY8RULGVqBDmpoyjwiyrjsg+URw=</a></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"><a href="https://pkg.go.dev/dmitri.shuralyov.com/gpu/mtl@v0.0.0-20190408044501-666a987793e9" rel="nofollow noreferrer noopener" target="_blank">dmitri.shuralyov.com/gpu/mtl</a> v0.0.0-20190408044501-666a987793e9/go.mod h1:<a href="https://sum.golang.org/lookup/dmitri.shuralyov.com/gpu/mtl@v0.0.0-20190408044501-666a987793e9" rel="nofollow noreferrer noopener" target="_blank">H6x//7gZCb22OMCxBHrMx7a5I7Hp++hsVxbQ4BYO7hU=</a></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/BurntSushi/toml@v0.3.1" rel="nofollow noreferrer noopener" target="_blank">github.com/BurntSushi/toml</a> v0.3.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/BurntSushi/toml@v0.3.1" rel="nofollow noreferrer noopener" target="_blank">xHWCNGjB5oqiDr8zfno3MHue2Ht5sIBksp03qcyfWMU=</a></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/BurntSushi/xgb@v0.0.0-20160522181843-27f122750802" rel="nofollow noreferrer noopener" target="_blank">github.com/BurntSushi/xgb</a> v0.0.0-20160522181843-27f122750802/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/BurntSushi/xgb@v0.0.0-20160522181843-27f122750802" rel="nofollow noreferrer noopener" target="_blank">IVnqGOEym/WlBOVXweHU+Q+/VP0lqqI8lqeDx9IjBqo=</a></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/OneOfOne/xxhash@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">github.com/OneOfOne/xxhash</a> v1.2.2 h1:<a href="https://sum.golang.org/lookup/github.com/OneOfOne/xxhash@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">KMrpdQIwFcEqXDklaen+P1axHaj9BSKzvpUUfnHldSE=</a></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/OneOfOne/xxhash@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">github.com/OneOfOne/xxhash</a> v1.2.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/OneOfOne/xxhash@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">HSdplMjZKSmBqAxg5vPj2TmRDmfkzw+cTzAElWljhcU=</a></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/ajstarks/svgo@v0.0.0-20180226025133-644b8db467af" rel="nofollow noreferrer noopener" target="_blank">github.com/ajstarks/svgo</a> v0.0.0-20180226025133-644b8db467af h1:<a href="https://sum.golang.org/lookup/github.com/ajstarks/svgo@v0.0.0-20180226025133-644b8db467af" rel="nofollow noreferrer noopener" target="_blank">wVe6/Ea46ZMeNkQjjBW6xcqyQA/j5e0D6GytH95g0gQ=</a></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/ajstarks/svgo@v0.0.0-20180226025133-644b8db467af" rel="nofollow noreferrer noopener" target="_blank">github.com/ajstarks/svgo</a> v0.0.0-20180226025133-644b8db467af/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/ajstarks/svgo@v0.0.0-20180226025133-644b8db467af" rel="nofollow noreferrer noopener" target="_blank">K08gAheRH3/J6wwsYMMT4xOr94bZjxIelGM0+d/wbFw=</a></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/alecthomas/template@v0.0.0-20160405071501-a0175ee3bccc" rel="nofollow noreferrer noopener" target="_blank">github.com/alecthomas/template</a> v0.0.0-20160405071501-a0175ee3bccc/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/alecthomas/template@v0.0.0-20160405071501-a0175ee3bccc" rel="nofollow noreferrer noopener" target="_blank">LOuyumcjzFXgccqObfd/Ljyb9UuFJ6TxHnclSeseNhc=</a></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/alecthomas/units@v0.0.0-20151022065526-2efee857e7cf" rel="nofollow noreferrer noopener" target="_blank">github.com/alecthomas/units</a> v0.0.0-20151022065526-2efee857e7cf/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/alecthomas/units@v0.0.0-20151022065526-2efee857e7cf" rel="nofollow noreferrer noopener" target="_blank">ybxpYRFXyAe+OPACYpWeL0wqObRcbAqCMya13uyzqw0=</a></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/armon/circbuf@v0.0.0-20150827004946-bbbad097214e" rel="nofollow noreferrer noopener" target="_blank">github.com/armon/circbuf</a> v0.0.0-20150827004946-bbbad097214e/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/armon/circbuf@v0.0.0-20150827004946-bbbad097214e" rel="nofollow noreferrer noopener" target="_blank">3U/XgcO3hCbHZ8TKRvWD2dDTCfh9M9ya+I9JpbB7O8o=</a></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/armon/go-metrics@v0.0.0-20180917152333-f0300d1749da" rel="nofollow noreferrer noopener" target="_blank">github.com/armon/go-metrics</a> v0.0.0-20180917152333-f0300d1749da/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/armon/go-metrics@v0.0.0-20180917152333-f0300d1749da" rel="nofollow noreferrer noopener" target="_blank">Q73ZrmVTwzkszR9V5SSuryQ31EELlFMUz1kKyl939pY=</a></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/armon/go-radix@v0.0.0-20180808171621-7fddfc383310" rel="nofollow noreferrer noopener" target="_blank">github.com/armon/go-radix</a> v0.0.0-20180808171621-7fddfc383310/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/armon/go-radix@v0.0.0-20180808171621-7fddfc383310" rel="nofollow noreferrer noopener" target="_blank">ufUuZ+zHj4x4TnLV4JWEpy2hxWSpsRywHrMgIH9cCH8=</a></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/beorn7/perks@v0.0.0-20180321164747-3a771d992973" rel="nofollow noreferrer noopener" target="_blank">github.com/beorn7/perks</a> v0.0.0-20180321164747-3a771d992973/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/beorn7/perks@v0.0.0-20180321164747-3a771d992973" rel="nofollow noreferrer noopener" target="_blank">Dwedo/Wpr24TaqPxmxbtue+5NUziq4I4S80YR8gNf3Q=</a></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/beorn7/perks@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/beorn7/perks</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/beorn7/perks@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">KWe93zE9D1o94FZ5RNwFwVgaQK1VOXiVxmqh+CedLV8=</a></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/bgentry/speakeasy@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/bgentry/speakeasy</a> v0.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/bgentry/speakeasy@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">+zsyZBPWlz7T6j88CTgSN5bM796AkVf0kBD4zp0CCIs=</a></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/biogo@v1.0.3" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/biogo</a> v1.0.3 h1:<a href="https://sum.golang.org/lookup/github.com/biogo/biogo@v1.0.3" rel="nofollow noreferrer noopener" target="_blank">LSRUaHBW5WyyTBkfG9lGZOych6uvfbFPB9j9OLaZ7Nw=</a></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/biogo@v1.0.3" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/biogo</a> v1.0.3/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/biogo/biogo@v1.0.3" rel="nofollow noreferrer noopener" target="_blank">WlqzR+oIOt6UKRqDbDsbLm7zHe4+FLLDd9iFTrnfloc=</a></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/boom@v0.0.0-20150317015657-28119bc1ffc1" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/boom</a> v0.0.0-20150317015657-28119bc1ffc1 h1:<a href="https://sum.golang.org/lookup/github.com/biogo/boom@v0.0.0-20150317015657-28119bc1ffc1" rel="nofollow noreferrer noopener" target="_blank">LAHY5JxqhOgJDeDBGKsQ4300qd3sG8C0j5CQS8gD+Kw=</a></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/boom@v0.0.0-20150317015657-28119bc1ffc1" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/boom</a> v0.0.0-20150317015657-28119bc1ffc1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/biogo/boom@v0.0.0-20150317015657-28119bc1ffc1" rel="nofollow noreferrer noopener" target="_blank">fwtxkutinkQcME9Zlywh66T0jZLLjgrwSLY2WxH2N3U=</a></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/graph@v0.0.0-20150317020928-057c1989faed" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/graph</a> v0.0.0-20150317020928-057c1989faed/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/biogo/graph@v0.0.0-20150317020928-057c1989faed" rel="nofollow noreferrer noopener" target="_blank">UuyD2swDzTz1ChZTQld42mP5pyePLSDccmGycTpxRew=</a></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/hts@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/hts</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/biogo/hts@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">6C9MdMt9ALD5PsluK5n0B0svHOpmVse3UjQQx/cTgOw=</a></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/hts@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/hts</a> v1.2.2 h1:<a href="https://sum.golang.org/lookup/github.com/biogo/hts@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">n+o6v+oWMfPR4oksDJndEDxgL7ee53Pltn7V9PxqXzc=</a></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/hts@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/hts</a> v1.2.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/biogo/hts@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">6C9MdMt9ALD5PsluK5n0B0svHOpmVse3UjQQx/cTgOw=</a></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/biogo/store@v0.0.0-20200104231603-2c6ad937eb83" rel="nofollow noreferrer noopener" target="_blank">github.com/biogo/store</a> v0.0.0-20200104231603-2c6ad937eb83/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/biogo/store@v0.0.0-20200104231603-2c6ad937eb83" rel="nofollow noreferrer noopener" target="_blank">wdbXg77soR6ESRprAMEwAQDFtLT6EAGF5o1GRy0cB5k=</a></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/bketelsen/crypt@v0.0.3-0.20200106085610-5cbc8cc4026c" rel="nofollow noreferrer noopener" target="_blank">github.com/bketelsen/crypt</a> v0.0.3-0.20200106085610-5cbc8cc4026c/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/bketelsen/crypt@v0.0.3-0.20200106085610-5cbc8cc4026c" rel="nofollow noreferrer noopener" target="_blank">MKsuJmJgSg28kpZDP6UIiPt0e0Oz0kqKNGyRaWEPv84=</a></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/bsipos/thist@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/bsipos/thist</a> v1.0.0 h1:<a href="https://sum.golang.org/lookup/github.com/bsipos/thist@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">vZ3W5/ZnT54s4LHeonTCbnzCb20ERlJUnhiwXoGpsbY=</a></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/bsipos/thist@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/bsipos/thist</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/bsipos/thist@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">7i0xwRua1/bmUxcxi2xAxaFL895rLtOpKUwnw3NrT8I=</a></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/cespare/xxhash@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/cespare/xxhash</a> v1.1.0 h1:<a href="https://sum.golang.org/lookup/github.com/cespare/xxhash@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">a6HrQnmkObjyL+Gs60czilIUGqrzKutQD6XZog3p+ko=</a></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/cespare/xxhash@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/cespare/xxhash</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/cespare/xxhash@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">XrSqR1VqqWfGrhpAt58auRo0WTKS1nRRg3ghfAqPWnc=</a></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/client9/misspell@v0.3.4" rel="nofollow noreferrer noopener" target="_blank">github.com/client9/misspell</a> v0.3.4/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/client9/misspell@v0.3.4" rel="nofollow noreferrer noopener" target="_blank">qj6jICC3Q7zFZvVWo7KLAzC3yx5G7kyvSDkc90ppPyw=</a></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/coreos/bbolt@v1.3.2" rel="nofollow noreferrer noopener" target="_blank">github.com/coreos/bbolt</a> v1.3.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/coreos/bbolt@v1.3.2" rel="nofollow noreferrer noopener" target="_blank">iRUV2dpdMOn7Bo10OQBFzIJO9kkE559Wcmn+qkEiiKk=</a></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/coreos/etcd@v3.3.13+incompatible" rel="nofollow noreferrer noopener" target="_blank">github.com/coreos/etcd</a> v3.3.13+incompatible/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/coreos/etcd@v3.3.13+incompatible" rel="nofollow noreferrer noopener" target="_blank">uF7uidLiAD3TWHmW31ZFd/JWoc32PjwdhPthX9715RE=</a></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/coreos/go-semver@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">github.com/coreos/go-semver</a> v0.3.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/coreos/go-semver@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">nnelYz7RCh+5ahJtPPxZlU+153eP4D4r3EedlOD2RNk=</a></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/coreos/go-systemd@v0.0.0-20190321100706-95778dfbb74e" rel="nofollow noreferrer noopener" target="_blank">github.com/coreos/go-systemd</a> v0.0.0-20190321100706-95778dfbb74e/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/coreos/go-systemd@v0.0.0-20190321100706-95778dfbb74e" rel="nofollow noreferrer noopener" target="_blank">F5haX7vjVVG0kc13fIWeqUViNPyEJxv/OmvnBo0Yme4=</a></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/coreos/pkg@v0.0.0-20180928190104-399ea9e2e55f" rel="nofollow noreferrer noopener" target="_blank">github.com/coreos/pkg</a> v0.0.0-20180928190104-399ea9e2e55f/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/coreos/pkg@v0.0.0-20180928190104-399ea9e2e55f" rel="nofollow noreferrer noopener" target="_blank">E3G3o1h8I7cfcXa63jLwjI0eiQQMgzzUDFVpN/nH/eA=</a></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/cpuguy83/go-md2man/v2@v2.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/cpuguy83/go-md2man/v2</a> v2.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/cpuguy83/go-md2man/v2@v2.0.0" rel="nofollow noreferrer noopener" target="_blank">maD7wRr/U5Z6m/iR4s+kqSMx2CaBsrgA7czyZG/E6dU=</a></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/cznic/mathutil@v0.0.0-20181122101859-297441e03548" rel="nofollow noreferrer noopener" target="_blank">github.com/cznic/mathutil</a> v0.0.0-20181122101859-297441e03548 h1:<a href="https://sum.golang.org/lookup/github.com/cznic/mathutil@v0.0.0-20181122101859-297441e03548" rel="nofollow noreferrer noopener" target="_blank">iwZdTE0PVqJCos1vaoKsclOGD3ADKpshg3SRtYBbwso=</a></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/cznic/mathutil@v0.0.0-20181122101859-297441e03548" rel="nofollow noreferrer noopener" target="_blank">github.com/cznic/mathutil</a> v0.0.0-20181122101859-297441e03548/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/cznic/mathutil@v0.0.0-20181122101859-297441e03548" rel="nofollow noreferrer noopener" target="_blank">e6NPNENfs9mPDVNRekM7lKScauxd5kXTr1Mfyig6TDM=</a></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/cznic/sortutil@v0.0.0-20181122101858-f5f958428db8" rel="nofollow noreferrer noopener" target="_blank">github.com/cznic/sortutil</a> v0.0.0-20181122101858-f5f958428db8 h1:<a href="https://sum.golang.org/lookup/github.com/cznic/sortutil@v0.0.0-20181122101858-f5f958428db8" rel="nofollow noreferrer noopener" target="_blank">LpMLYGyy67BoAFGda1NeOBQwqlv7nUXpm+rIVHGxZZ4=</a></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/cznic/sortutil@v0.0.0-20181122101858-f5f958428db8" rel="nofollow noreferrer noopener" target="_blank">github.com/cznic/sortutil</a> v0.0.0-20181122101858-f5f958428db8/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/cznic/sortutil@v0.0.0-20181122101858-f5f958428db8" rel="nofollow noreferrer noopener" target="_blank">q2w6Bg5jeox1B+QkJ6Wp/+Vn0G/bo3f1uY7Fn3vivIQ=</a></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/davecgh/go-spew@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/davecgh/go-spew</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/davecgh/go-spew@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=</a></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/davecgh/go-spew@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/davecgh/go-spew</a> v1.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/davecgh/go-spew@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">J7Y8YcW2NihsgmVo/mv3lAwl/skON4iLHjSsI+c5H38=</a></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/dgrijalva/jwt-go@v3.2.0+incompatible" rel="nofollow noreferrer noopener" target="_blank">github.com/dgrijalva/jwt-go</a> v3.2.0+incompatible/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/dgrijalva/jwt-go@v3.2.0+incompatible" rel="nofollow noreferrer noopener" target="_blank">E3ru+11k8xSBh+hMPgOLZmtrrCbhqsmaPHjLKYnJCaQ=</a></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/dgryski/go-sip13@v0.0.0-20181026042036-e10d5fee7954" rel="nofollow noreferrer noopener" target="_blank">github.com/dgryski/go-sip13</a> v0.0.0-20181026042036-e10d5fee7954/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/dgryski/go-sip13@v0.0.0-20181026042036-e10d5fee7954" rel="nofollow noreferrer noopener" target="_blank">vAd38F8PWV+bWy6jNmig1y/TA+kYO4g3RSRF0IAv0no=</a></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/dustin/go-humanize@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/dustin/go-humanize</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/dustin/go-humanize@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">HtrtbFcZ19U5GC7JDqmcUSB87Iq5E25KnS6fMYU6eOk=</a></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/edsrzf/mmap-go@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/edsrzf/mmap-go</a> v1.0.0 h1:<a href="https://sum.golang.org/lookup/github.com/edsrzf/mmap-go@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">CEBF7HpRnUCSJgGUb5h1Gm7e3VkmVDrR8lvWVLtrOFw=</a></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/edsrzf/mmap-go@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/edsrzf/mmap-go</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/edsrzf/mmap-go@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">YO35OhQPt3KJa3ryjFM5Bs14WD66h8eGKpfaBNrHW5M=</a></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/fatih/color@v1.7.0" rel="nofollow noreferrer noopener" target="_blank">github.com/fatih/color</a> v1.7.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/fatih/color@v1.7.0" rel="nofollow noreferrer noopener" target="_blank">Zm6kSWBoL9eyXnKyktHP6abPY2pDugNf5KwzbycvMj4=</a></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/fogleman/gg@v1.2.1-0.20190220221249-0403632d5b90" rel="nofollow noreferrer noopener" target="_blank">github.com/fogleman/gg</a> v1.2.1-0.20190220221249-0403632d5b90 h1:<a href="https://sum.golang.org/lookup/github.com/fogleman/gg@v1.2.1-0.20190220221249-0403632d5b90" rel="nofollow noreferrer noopener" target="_blank">WXb3TSNmHp2vHoCroCIB1foO/yQ36swABL8aOVeDpgg=</a></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/fogleman/gg@v1.2.1-0.20190220221249-0403632d5b90" rel="nofollow noreferrer noopener" target="_blank">github.com/fogleman/gg</a> v1.2.1-0.20190220221249-0403632d5b90/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/fogleman/gg@v1.2.1-0.20190220221249-0403632d5b90" rel="nofollow noreferrer noopener" target="_blank">R/bRT+9gY/C5z7JzPU0zXsXHKM4/ayA+zqcVNZzPa1k=</a></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/fsnotify/fsnotify@v1.4.7" rel="nofollow noreferrer noopener" target="_blank">github.com/fsnotify/fsnotify</a> v1.4.7/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/fsnotify/fsnotify@v1.4.7" rel="nofollow noreferrer noopener" target="_blank">jwhsz4b93w/PPRr/qN1Yymfu8t87LnFCMoQvtojpjFo=</a></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/fsnotify/fsnotify@v1.4.9" rel="nofollow noreferrer noopener" target="_blank">github.com/fsnotify/fsnotify</a> v1.4.9 h1:<a href="https://sum.golang.org/lookup/github.com/fsnotify/fsnotify@v1.4.9" rel="nofollow noreferrer noopener" target="_blank">hsms1Qyu0jgnwNXIxa+/V/PDsU6CfLf6CNO8H7IWoS4=</a></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/fsnotify/fsnotify@v1.4.9" rel="nofollow noreferrer noopener" target="_blank">github.com/fsnotify/fsnotify</a> v1.4.9/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/fsnotify/fsnotify@v1.4.9" rel="nofollow noreferrer noopener" target="_blank">znqG4EE+3YCdAaPaxE2ZRY/06pZUdp0tY4IgpuI1SZQ=</a></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/ghodss/yaml@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/ghodss/yaml</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/ghodss/yaml@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">4dBDuWmgqj2HViK6kFavaiC9ZROes6MMH2rRYeMEF04=</a></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/go-gl/glfw@v0.0.0-20190409004039-e6da0acd62b1" rel="nofollow noreferrer noopener" target="_blank">github.com/go-gl/glfw</a> v0.0.0-20190409004039-e6da0acd62b1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/go-gl/glfw@v0.0.0-20190409004039-e6da0acd62b1" rel="nofollow noreferrer noopener" target="_blank">vR7hzQXu2zJy9AVAgeJqvqgH9Q5CA+iKCZ2gyEVpxRU=</a></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/go-gl/glfw/v3.3/glfw@v0.0.0-20191125211704-12ad95a8df72" rel="nofollow noreferrer noopener" target="_blank">github.com/go-gl/glfw/v3.3/glfw</a> v0.0.0-20191125211704-12ad95a8df72/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/go-gl/glfw/v3.3/glfw@v0.0.0-20191125211704-12ad95a8df72" rel="nofollow noreferrer noopener" target="_blank">tQ2UAYgL5IevRw8kRxooKSPJfGvJ9fJQFa0TUsXzTg8=</a></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/go-kit/kit@v0.8.0" rel="nofollow noreferrer noopener" target="_blank">github.com/go-kit/kit</a> v0.8.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/go-kit/kit@v0.8.0" rel="nofollow noreferrer noopener" target="_blank">xBxKIO96dXMWWy0MnWVtmwkA9/13aqxPnvrjFYMA2as=</a></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/go-logfmt/logfmt@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">github.com/go-logfmt/logfmt</a> v0.3.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/go-logfmt/logfmt@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">Qt1PoO58o5twSAckw1HlFXLmHsOX5/0LbT9GBnD5lWE=</a></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/go-logfmt/logfmt@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">github.com/go-logfmt/logfmt</a> v0.4.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/go-logfmt/logfmt@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">3RMwSq7FuexP4Kalkev3ejPJsZTpXXBr9+V4qmtdjCk=</a></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/go-stack/stack@v1.8.0" rel="nofollow noreferrer noopener" target="_blank">github.com/go-stack/stack</a> v1.8.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/go-stack/stack@v1.8.0" rel="nofollow noreferrer noopener" target="_blank">v0f6uXyyMGvRgIKkXu+yp6POWl0qKG85gN/melR3HDY=</a></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/gogo/protobuf@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/gogo/protobuf</a> v1.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/gogo/protobuf@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">r8qH/GZQm5c6nD/R0oafs1akxWv10x8SbQlK7atdtwQ=</a></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/gogo/protobuf@v1.2.1" rel="nofollow noreferrer noopener" target="_blank">github.com/gogo/protobuf</a> v1.2.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/gogo/protobuf@v1.2.1" rel="nofollow noreferrer noopener" target="_blank">hp+jE20tsWTFYpLwKvXlhS1hjn+gTNwPg2I6zVXpSg4=</a></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/freetype@v0.0.0-20170609003504-e2365dfdc4a0" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/freetype</a> v0.0.0-20170609003504-e2365dfdc4a0 h1:<a href="https://sum.golang.org/lookup/github.com/golang/freetype@v0.0.0-20170609003504-e2365dfdc4a0" rel="nofollow noreferrer noopener" target="_blank">DACJavvAHhabrF08vX0COfcOBJRhZ8lUbR+ZWIs0Y5g=</a></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/freetype@v0.0.0-20170609003504-e2365dfdc4a0" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/freetype</a> v0.0.0-20170609003504-e2365dfdc4a0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/freetype@v0.0.0-20170609003504-e2365dfdc4a0" rel="nofollow noreferrer noopener" target="_blank">E/TSTwGwJL78qG/PmXZO1EjYhfJinVAhrmmHX6Z8B9k=</a></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/glog@v0.0.0-20160126235308-23def4e6c14b" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/glog</a> v0.0.0-20160126235308-23def4e6c14b/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/glog@v0.0.0-20160126235308-23def4e6c14b" rel="nofollow noreferrer noopener" target="_blank">SBH7ygxi8pfUlaOkMMuAQtPIUF8ecWP5IEl/CR7VP2Q=</a></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/groupcache@v0.0.0-20190129154638-5b532d6fd5ef" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/groupcache</a> v0.0.0-20190129154638-5b532d6fd5ef/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/groupcache@v0.0.0-20190129154638-5b532d6fd5ef" rel="nofollow noreferrer noopener" target="_blank">cIg4eruTrX1D+g88fzRXU5OdNfaM+9IcxsU14FzY7Hc=</a></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/mock@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/mock</a> v1.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/mock@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">oTYuIxOrZwtPieC+H1uAHpcLFnEyAGVDL/k47Jfbm0A=</a></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/mock@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/mock</a> v1.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/mock@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">oTYuIxOrZwtPieC+H1uAHpcLFnEyAGVDL/k47Jfbm0A=</a></span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/mock@v1.3.1" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/mock</a> v1.3.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/mock@v1.3.1" rel="nofollow noreferrer noopener" target="_blank">sBzyDLLjw3U8JLTeZvSv8jJB+tU5PVekmnlKIyFUx0Y=</a></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/protobuf@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/protobuf</a> v1.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/protobuf@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">6lQm79b+lXiMfvg/cZm0SGofjICqVBUtrP5yJMmIC1U=</a></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/protobuf@v1.3.1" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/protobuf</a> v1.3.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/protobuf@v1.3.1" rel="nofollow noreferrer noopener" target="_blank">6lQm79b+lXiMfvg/cZm0SGofjICqVBUtrP5yJMmIC1U=</a></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/golang/protobuf@v1.3.2" rel="nofollow noreferrer noopener" target="_blank">github.com/golang/protobuf</a> v1.3.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/golang/protobuf@v1.3.2" rel="nofollow noreferrer noopener" target="_blank">6lQm79b+lXiMfvg/cZm0SGofjICqVBUtrP5yJMmIC1U=</a></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/btree@v0.0.0-20180813153112-4030bb1f1f0c" rel="nofollow noreferrer noopener" target="_blank">github.com/google/btree</a> v0.0.0-20180813153112-4030bb1f1f0c/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/btree@v0.0.0-20180813153112-4030bb1f1f0c" rel="nofollow noreferrer noopener" target="_blank">lNA+9X1NB3Zf8V7Ke586lFgjr2dZNuvo3lPJSGZ5JPQ=</a></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/btree@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/google/btree</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/btree@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">lNA+9X1NB3Zf8V7Ke586lFgjr2dZNuvo3lPJSGZ5JPQ=</a></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/go-cmp@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/google/go-cmp</a> v0.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/go-cmp@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">oXzfMopK8JAjlY9xF4vHSVASa0yLyX7SntLO5aqRK0M=</a></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/go-cmp@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">github.com/google/go-cmp</a> v0.3.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/go-cmp@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">8QqcDgzrUqlUb/G2PQTWiueGozuR1884gddMywk6iLU=</a></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/martian@v2.1.0+incompatible" rel="nofollow noreferrer noopener" target="_blank">github.com/google/martian</a> v2.1.0+incompatible/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/martian@v2.1.0+incompatible" rel="nofollow noreferrer noopener" target="_blank">9I4somxYTbIHy5NJKHRl3wXiIaQGbYVAs8BPL6v8lEs=</a></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/pprof@v0.0.0-20181206194817-3ea8567a2e57" rel="nofollow noreferrer noopener" target="_blank">github.com/google/pprof</a> v0.0.0-20181206194817-3ea8567a2e57/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/pprof@v0.0.0-20181206194817-3ea8567a2e57" rel="nofollow noreferrer noopener" target="_blank">zfwlbNMJ+OItoe0UupaVj+oy1omPYYDuagoSzA8v9mc=</a></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/pprof@v0.0.0-20190515194954-54271f7e092f" rel="nofollow noreferrer noopener" target="_blank">github.com/google/pprof</a> v0.0.0-20190515194954-54271f7e092f/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/pprof@v0.0.0-20190515194954-54271f7e092f" rel="nofollow noreferrer noopener" target="_blank">zfwlbNMJ+OItoe0UupaVj+oy1omPYYDuagoSzA8v9mc=</a></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/google/renameio@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/google/renameio</a> v0.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/google/renameio@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">KWCgfxg9yswjAJkECMjeO8J8rahYeXnNhOm40UhjYkI=</a></span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/googleapis/gax-go/v2@v2.0.4" rel="nofollow noreferrer noopener" target="_blank">github.com/googleapis/gax-go/v2</a> v2.0.4/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/googleapis/gax-go/v2@v2.0.4" rel="nofollow noreferrer noopener" target="_blank">0Wqv26UfaUD9n4G6kQubkQ+KchISgw+vpHVxEJEs9eg=</a></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/googleapis/gax-go/v2@v2.0.5" rel="nofollow noreferrer noopener" target="_blank">github.com/googleapis/gax-go/v2</a> v2.0.5/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/googleapis/gax-go/v2@v2.0.5" rel="nofollow noreferrer noopener" target="_blank">DWXyrwAJ9X0FpwwEdw+IPEYBICEFu5mhpdKc/us6bOk=</a></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/gopherjs/gopherjs@v0.0.0-20181017120253-0766667cb4d1" rel="nofollow noreferrer noopener" target="_blank">github.com/gopherjs/gopherjs</a> v0.0.0-20181017120253-0766667cb4d1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/gopherjs/gopherjs@v0.0.0-20181017120253-0766667cb4d1" rel="nofollow noreferrer noopener" target="_blank">wJfORRmW1u3UXTncJ5qlYoELFm8eSnnEO6hX4iZ3EWY=</a></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/gorilla/websocket@v1.4.2" rel="nofollow noreferrer noopener" target="_blank">github.com/gorilla/websocket</a> v1.4.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/gorilla/websocket@v1.4.2" rel="nofollow noreferrer noopener" target="_blank">YR8l580nyteQvAITg2hZ9XVh4b55+EU/adAjf1fMHhE=</a></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/grpc-ecosystem/go-grpc-middleware@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/grpc-ecosystem/go-grpc-middleware</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/grpc-ecosystem/go-grpc-middleware@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">FiyG127CGDf3tlThmgyCl78X/SZQqEOJBCDaAfeWzPs=</a></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/grpc-ecosystem/go-grpc-prometheus@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/grpc-ecosystem/go-grpc-prometheus</a> v1.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/grpc-ecosystem/go-grpc-prometheus@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">8NvIoxWQoOIhqOTXgfV/d3M/q6VIi02HzZEHgUlZvzk=</a></span>
</pre>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/grpc-ecosystem/grpc-gateway@v1.9.0" rel="nofollow noreferrer noopener" target="_blank">github.com/grpc-ecosystem/grpc-gateway</a> v1.9.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/grpc-ecosystem/grpc-gateway@v1.9.0" rel="nofollow noreferrer noopener" target="_blank">vNeuVxBJEsws4ogUvrchl83t/GYV9WGTSLVdBhOQFDY=</a></span>
</pre>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/consul/api@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/consul/api</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/consul/api@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">VmuI/Lkw1nC05EYQWNKwWGbkg+FbDBtguAZLlVdkD9Q=</a></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/consul/sdk@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/consul/sdk</a> v0.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/consul/sdk@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">VKf9jXwCTEY1QZP2MOLRhb5i/I/ssyNV1vwHyQBF0x8=</a></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/errwrap@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/errwrap</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/errwrap@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">YH+1FKiLXxHSkmPseP+kNlulaMuP3n2brvKWEqk/Jc4=</a></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-cleanhttp@v0.5.1" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-cleanhttp</a> v0.5.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-cleanhttp@v0.5.1" rel="nofollow noreferrer noopener" target="_blank">JpRdi6/HCYpAwUzNwuwqhbovhLtngrth3wmdIIUrZ80=</a></span>
</pre>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-immutable-radix@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-immutable-radix</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-immutable-radix@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">0y9vanUI8NX6FsYoO3zeMjhV/C5i9g4Q3DwcSNZ4P60=</a></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-msgpack@v0.5.3" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-msgpack</a> v0.5.3/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-msgpack@v0.5.3" rel="nofollow noreferrer noopener" target="_blank">ahLV/dePpqEmjfWmKiqvPkv/twdG7iPBM1vqhUKIvfM=</a></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-multierror@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-multierror</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-multierror@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">dHtQlpGsu+cZNNAkkCN/P3hoUDHhCYQXV3UM06sGGrk=</a></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-rootcerts@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-rootcerts</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-rootcerts@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">K6zTfqpRlCUIjkwsN4Z+hiSfzSTQa6eBIzfwKfwNnHU=</a></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-sockaddr@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-sockaddr</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-sockaddr@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">7Xibr9yA9JjQq1JpNB2Vw7kxv8xerXegt+ozgdvDeDU=</a></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-syslog@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-syslog</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-syslog@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">qPfqrKkXGihmCqbJM2mZgkZGvKG1dFdvsLplgctolz4=</a></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-uuid@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-uuid</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-uuid@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">6SBZvOh/SIDV7/2o3Jml5SYk/TvGqwFJ/bN7x4byOro=</a></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go-uuid@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go-uuid</a> v1.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go-uuid@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">6SBZvOh/SIDV7/2o3Jml5SYk/TvGqwFJ/bN7x4byOro=</a></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/go.net@v0.0.1" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/go.net</a> v0.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/go.net@v0.0.1" rel="nofollow noreferrer noopener" target="_blank">hjKkEWcCURg++eb33jQU7oqQcI9XDCnUzHA0oac0k90=</a></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/golang-lru@v0.5.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/golang-lru</a> v0.5.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/golang-lru@v0.5.0" rel="nofollow noreferrer noopener" target="_blank">/m3WP610KZHVQ1SGc6re/UDhFvYD7pJ4Ao+sR/qLZy8=</a></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/golang-lru@v0.5.1" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/golang-lru</a> v0.5.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/golang-lru@v0.5.1" rel="nofollow noreferrer noopener" target="_blank">/m3WP610KZHVQ1SGc6re/UDhFvYD7pJ4Ao+sR/qLZy8=</a></span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/hcl@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/hcl</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/hcl@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">E5yfLk+7swimpb2L/Alb/PJmXilQ/rhwaUYs4T20WEQ=</a></span>
</pre>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/logutils@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/logutils</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/logutils@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">QIAnNjmIWmVIIkWDTG1z5v++HQmx9WQRO+LraFDTW64=</a></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/mdns@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/mdns</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/mdns@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">tL+uN++7HEJ6SQLQ2/p+z2pH24WQKWjBPkE0mNTz8vQ=</a></span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/memberlist@v0.1.3" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/memberlist</a> v0.1.3/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/memberlist@v0.1.3" rel="nofollow noreferrer noopener" target="_blank">ajVTdAv/9Im8oMAAj5G31PhhMCZJV2pPBoIllUwCN7I=</a></span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/hashicorp/serf@v0.8.2" rel="nofollow noreferrer noopener" target="_blank">github.com/hashicorp/serf</a> v0.8.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/hashicorp/serf@v0.8.2" rel="nofollow noreferrer noopener" target="_blank">6hOLApaqBFA1NXqRQAsxw9QxuDEvNxSQRwA/JwenrHc=</a></span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/iafan/cwalk@v0.0.0-20191125092548-dd7f505d2f66" rel="nofollow noreferrer noopener" target="_blank">github.com/iafan/cwalk</a> v0.0.0-20191125092548-dd7f505d2f66 h1:<a href="https://sum.golang.org/lookup/github.com/iafan/cwalk@v0.0.0-20191125092548-dd7f505d2f66" rel="nofollow noreferrer noopener" target="_blank">nC48Zi9jZpiu0QZkqMpmKpG2J3ytdSW5WKcm8ON0T0g=</a></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/iafan/cwalk@v0.0.0-20191125092548-dd7f505d2f66" rel="nofollow noreferrer noopener" target="_blank">github.com/iafan/cwalk</a> v0.0.0-20191125092548-dd7f505d2f66/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/iafan/cwalk@v0.0.0-20191125092548-dd7f505d2f66" rel="nofollow noreferrer noopener" target="_blank">qVux82tax0171OVITiCxp2fPNmpP4jv3/RHLcqZ0Pf4=</a></span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/inconshreveable/mousetrap@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/inconshreveable/mousetrap</a> v1.0.0 h1:<a href="https://sum.golang.org/lookup/github.com/inconshreveable/mousetrap@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">Z8tu5sraLXCXIcARxBp/8cbvlwVa7Z1NHg9XEKhtSvM=</a></span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/inconshreveable/mousetrap@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/inconshreveable/mousetrap</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/inconshreveable/mousetrap@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">PxqpIevigyE2G7u3NXJIT2ANytuPF1OarO4DADm73n8=</a></span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/jonboulle/clockwork@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/jonboulle/clockwork</a> v0.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/jonboulle/clockwork@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">Ii8DK3G1RaLaWxj9trq07+26W01tbo22gdxWY5EU2bo=</a></span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/json-iterator/go@v1.1.6" rel="nofollow noreferrer noopener" target="_blank">github.com/json-iterator/go</a> v1.1.6/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/json-iterator/go@v1.1.6" rel="nofollow noreferrer noopener" target="_blank">+SdeFBvtyEkXs7REEP0seUULqWtbJapLOCVDaaPEHmU=</a></span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/jstemmer/go-junit-report@v0.0.0-20190106144839-af01ea7f8024" rel="nofollow noreferrer noopener" target="_blank">github.com/jstemmer/go-junit-report</a> v0.0.0-20190106144839-af01ea7f8024/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/jstemmer/go-junit-report@v0.0.0-20190106144839-af01ea7f8024" rel="nofollow noreferrer noopener" target="_blank">6v2b51hI/fHJwM22ozAgKL4VKDeJcHhJFhtBdhmNjmU=</a></span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/jtolds/gls@v4.20.0+incompatible" rel="nofollow noreferrer noopener" target="_blank">github.com/jtolds/gls</a> v4.20.0+incompatible/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/jtolds/gls@v4.20.0+incompatible" rel="nofollow noreferrer noopener" target="_blank">QJZ7F/aHp+rZTRtaJ1ow/lLfFfVYBRgL+9YlvaHOwJU=</a></span>
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/julienschmidt/httprouter@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/julienschmidt/httprouter</a> v1.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/julienschmidt/httprouter@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">SYymIcj16QtmaHHD7aYtjjsJG7VTCxuUUipMqKk8s4w=</a></span>
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/jung-kurt/gofpdf@v1.0.3-0.20190309125859-24315acbbda5" rel="nofollow noreferrer noopener" target="_blank">github.com/jung-kurt/gofpdf</a> v1.0.3-0.20190309125859-24315acbbda5 h1:<a href="https://sum.golang.org/lookup/github.com/jung-kurt/gofpdf@v1.0.3-0.20190309125859-24315acbbda5" rel="nofollow noreferrer noopener" target="_blank">PJr+ZMXIecYc1Ey2zucXdR73SMBtgjPgwa31099IMv0=</a></span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/jung-kurt/gofpdf@v1.0.3-0.20190309125859-24315acbbda5" rel="nofollow noreferrer noopener" target="_blank">github.com/jung-kurt/gofpdf</a> v1.0.3-0.20190309125859-24315acbbda5/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/jung-kurt/gofpdf@v1.0.3-0.20190309125859-24315acbbda5" rel="nofollow noreferrer noopener" target="_blank">7Id9E/uU8ce6rXgefFLlgrJj/GYY22cpxn+r32jIOes=</a></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kisielk/errcheck@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/kisielk/errcheck</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kisielk/errcheck@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">EZBBE59ingxPouuu3KfxchcWSUPOHkagtvWXihfKN4Q=</a></span>
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kisielk/gotool@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/kisielk/gotool</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kisielk/gotool@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">XhKaO+MFFWcvkIS/tQcRk01m1F5IRFswLeQ+oQHNcck=</a></span>
</pre>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/klauspost/compress@v1.11.4" rel="nofollow noreferrer noopener" target="_blank">github.com/klauspost/compress</a> v1.11.4 h1:<a href="https://sum.golang.org/lookup/github.com/klauspost/compress@v1.11.4" rel="nofollow noreferrer noopener" target="_blank">kz40R/YWls3iqT9zX9AHN3WoVsrAWVyui5sxuLqiXqU=</a></span>
</pre>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/klauspost/compress@v1.11.4" rel="nofollow noreferrer noopener" target="_blank">github.com/klauspost/compress</a> v1.11.4/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/klauspost/compress@v1.11.4" rel="nofollow noreferrer noopener" target="_blank">aoV0uJVorq1K+umq18yTdKaF57EivdYsUV+/s2qKfXs=</a></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/klauspost/pgzip@v1.2.5" rel="nofollow noreferrer noopener" target="_blank">github.com/klauspost/pgzip</a> v1.2.5 h1:<a href="https://sum.golang.org/lookup/github.com/klauspost/pgzip@v1.2.5" rel="nofollow noreferrer noopener" target="_blank">qnWYvvKqedOF2ulHpMG72XQol4ILEJ8k2wwRl/Km8oE=</a></span>
</pre>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/klauspost/pgzip@v1.2.5" rel="nofollow noreferrer noopener" target="_blank">github.com/klauspost/pgzip</a> v1.2.5/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/klauspost/pgzip@v1.2.5" rel="nofollow noreferrer noopener" target="_blank">Ch1tH69qFZu15pkjo5kYi6mth2Zzwzt50oCQKQE9RUs=</a></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/konsorten/go-windows-terminal-sequences@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">github.com/konsorten/go-windows-terminal-sequences</a> v1.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/konsorten/go-windows-terminal-sequences@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">T0+1ngSBFLxvqU3pZ+m/2kptfBszLMUkC4ZK/EgS/cQ=</a></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kortschak/utter@v0.0.0-20190412033250-50fe362e6560" rel="nofollow noreferrer noopener" target="_blank">github.com/kortschak/utter</a> v0.0.0-20190412033250-50fe362e6560/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kortschak/utter@v0.0.0-20190412033250-50fe362e6560" rel="nofollow noreferrer noopener" target="_blank">oDr41C7kH9wvAikWyFhr6UFr8R7nelpmCF5XR5rL7I8=</a></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kr/logfmt@v0.0.0-20140226030751-b84e30acd515" rel="nofollow noreferrer noopener" target="_blank">github.com/kr/logfmt</a> v0.0.0-20140226030751-b84e30acd515/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kr/logfmt@v0.0.0-20140226030751-b84e30acd515" rel="nofollow noreferrer noopener" target="_blank">+0opPa2QZZtGFBFZlji/RkVcI2GknAs/DXo4wKdlNEc=</a></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kr/pretty@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/kr/pretty</a> v0.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kr/pretty@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">dAy3ld7l9f0ibDNOQOHHMYYIIbhfbHSm3C4ZsoJORNo=</a></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kr/pretty@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/kr/pretty</a> v0.2.0 h1:<a href="https://sum.golang.org/lookup/github.com/kr/pretty@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">s5hAObm+yFO5uHYt5dYjxi2rXrsnmRpJx4OYvIWUaQs=</a></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kr/pretty@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/kr/pretty</a> v0.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kr/pretty@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">ipq/a2n7PKx3OHsz4KJII5eveXtPO4qwEXGdVfWzfnI=</a></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kr/pty@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/kr/pty</a> v1.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kr/pty@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">pFQYn66WHrOpPYNljwOMqo10TkYh1fy3cYio2l3bCsQ=</a></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kr/text@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/kr/text</a> v0.1.0 h1:<a href="https://sum.golang.org/lookup/github.com/kr/text@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">45sCR5RtlFHMR4UwH9sdQ5TC8v0qDQCHnXt+kaKSTVE=</a></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/kr/text@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/kr/text</a> v0.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/kr/text@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">4Jbv+DJW3UT/LiOwJeYQe1efqtUx/iVham/4vfdArNI=</a></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/logrusorgru/aurora@v2.0.3+incompatible" rel="nofollow noreferrer noopener" target="_blank">github.com/logrusorgru/aurora</a> v2.0.3+incompatible h1:<a href="https://sum.golang.org/lookup/github.com/logrusorgru/aurora@v2.0.3+incompatible" rel="nofollow noreferrer noopener" target="_blank">tOpm7WcpBTn4fjmVfgpQq0EfczGlG91VSDkswnjF5A8=</a></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/logrusorgru/aurora@v2.0.3+incompatible" rel="nofollow noreferrer noopener" target="_blank">github.com/logrusorgru/aurora</a> v2.0.3+incompatible/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/logrusorgru/aurora@v2.0.3+incompatible" rel="nofollow noreferrer noopener" target="_blank">7rIyQOR62GCctdiQpZ/zOJlFyk6y+94wXzv6RNZgaR4=</a></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/magiconair/properties@v1.8.1" rel="nofollow noreferrer noopener" target="_blank">github.com/magiconair/properties</a> v1.8.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/magiconair/properties@v1.8.1" rel="nofollow noreferrer noopener" target="_blank">PppfXfuXeibc/6YijjN8zIbojt8czPbwD3XqdrwzmxQ=</a></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-colorable@v0.0.9" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-colorable</a> v0.0.9/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-colorable@v0.0.9" rel="nofollow noreferrer noopener" target="_blank">9vuHe8Xs5qXnSaW/c/ABM9alt+Vo+STaOChaDxuIBZU=</a></span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-colorable@v0.1.8" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-colorable</a> v0.1.8 h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-colorable@v0.1.8" rel="nofollow noreferrer noopener" target="_blank">c1ghPdyEDarC70ftn0y+A/Ee++9zz8ljHG1b13eJ0s8=</a></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-colorable@v0.1.8" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-colorable</a> v0.1.8/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-colorable@v0.1.8" rel="nofollow noreferrer noopener" target="_blank">u6P/XSegPjTcexA+o6vUJrdnUu04hMope9wVRipJSqc=</a></span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-isatty@v0.0.3" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-isatty</a> v0.0.3/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-isatty@v0.0.3" rel="nofollow noreferrer noopener" target="_blank">M+lRXTBqGeGNdLjl/ufCoiOlB5xdOkqRJdNxMWT7Zi4=</a></span>
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-isatty@v0.0.12" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-isatty</a> v0.0.12 h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-isatty@v0.0.12" rel="nofollow noreferrer noopener" target="_blank">wuysRhFDzyxgEmMf5xjvJ2M9dZoWAXNNr5LSBS7uHXY=</a></span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-isatty@v0.0.12" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-isatty</a> v0.0.12/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-isatty@v0.0.12" rel="nofollow noreferrer noopener" target="_blank">cbi8OIDigv2wuxKPP5vlRcQ1OAZbq2CE4Kysco4FUpU=</a></span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-runewidth@v0.0.9" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-runewidth</a> v0.0.9 h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-runewidth@v0.0.9" rel="nofollow noreferrer noopener" target="_blank">Lm995f3rfxdpd6TSmuVCHVb/QhupuXlYr8sCI/QdE+0=</a></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mattn/go-runewidth@v0.0.9" rel="nofollow noreferrer noopener" target="_blank">github.com/mattn/go-runewidth</a> v0.0.9/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mattn/go-runewidth@v0.0.9" rel="nofollow noreferrer noopener" target="_blank">H031xJmbD/WCDINGzjvQ9THkh0rPKHF+m2gUSrubnMI=</a></span>
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/matttproud/golang_protobuf_extensions@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">github.com/matttproud/golang_protobuf_extensions</a> v1.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/matttproud/golang_protobuf_extensions@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">D8He9yQNgCq6Z5Ld7szi9bcBfOoFv/3dc6xSMkL2PC0=</a></span>
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/miekg/dns@v1.0.14" rel="nofollow noreferrer noopener" target="_blank">github.com/miekg/dns</a> v1.0.14/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/miekg/dns@v1.0.14" rel="nofollow noreferrer noopener" target="_blank">W1PPwlIAgtquWBMBEV9nkV9Cazfe8ScdGz/Lj7v3Nrg=</a></span>
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/cli@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/cli</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/cli@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">hNIlj7HEI86fIcpObd7a0FcrxTWetlwJDGcceTlRvqc=</a></span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/go-homedir@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/go-homedir</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/go-homedir@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">SfyaCUpYCn1Vlf4IUYiD9fPX4A5wJrkLzIz1N1q0pr0=</a></span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/go-homedir@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/go-homedir</a> v1.1.0 h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/go-homedir@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">lukF9ziXFxDFPkA1vsr5zpc1XuPDn/wFntq5mG+4E0Y=</a></span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/go-homedir@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/go-homedir</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/go-homedir@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">SfyaCUpYCn1Vlf4IUYiD9fPX4A5wJrkLzIz1N1q0pr0=</a></span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/go-testing-interface@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/go-testing-interface</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/go-testing-interface@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">kRemZodwjscx+RGhAo8eIhFbs2+BFgRtFPeD/KE+zxI=</a></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/gox@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/gox</a> v0.4.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/gox@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">Sd9lOJ0+aimLBi73mGofS1ycjY8lL3uZM3JPS42BGNg=</a></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/iochan@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/iochan</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/iochan@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">JwYml1nuB7xOzsp52dPpHFffvOCDupsG0QubkSMEySY=</a></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/mapstructure@v0.0.0-20160808181253-ca63d7c062ee" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/mapstructure</a> v0.0.0-20160808181253-ca63d7c062ee/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/mapstructure@v0.0.0-20160808181253-ca63d7c062ee" rel="nofollow noreferrer noopener" target="_blank">FVVH3fgwuzCH5S8UJGiWEs2h04kUh9fWfEaFds41c1Y=</a></span>
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mitchellh/mapstructure@v1.1.2" rel="nofollow noreferrer noopener" target="_blank">github.com/mitchellh/mapstructure</a> v1.1.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mitchellh/mapstructure@v1.1.2" rel="nofollow noreferrer noopener" target="_blank">FVVH3fgwuzCH5S8UJGiWEs2h04kUh9fWfEaFds41c1Y=</a></span>
</pre>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/modern-go/concurrent@v0.0.0-20180306012644-bacd9c7ef1dd" rel="nofollow noreferrer noopener" target="_blank">github.com/modern-go/concurrent</a> v0.0.0-20180306012644-bacd9c7ef1dd/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/modern-go/concurrent@v0.0.0-20180306012644-bacd9c7ef1dd" rel="nofollow noreferrer noopener" target="_blank">6dJC0mAP4ikYIbvyc7fijjWJddQyLn8Ig3JB5CqoB9Q=</a></span>
</pre>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/modern-go/reflect2@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">github.com/modern-go/reflect2</a> v1.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/modern-go/reflect2@v1.0.1" rel="nofollow noreferrer noopener" target="_blank">bx2lNnkwVCuqBIxFjflWJWanXIb3RllmbCylyMrvgv0=</a></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/mwitkow/go-conntrack@v0.0.0-20161129095857-cc309e4a2223" rel="nofollow noreferrer noopener" target="_blank">github.com/mwitkow/go-conntrack</a> v0.0.0-20161129095857-cc309e4a2223/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/mwitkow/go-conntrack@v0.0.0-20161129095857-cc309e4a2223" rel="nofollow noreferrer noopener" target="_blank">qRWi+5nqEBWmkhHvq77mSJWrCKwh8bxhgT7d/eI7P4U=</a></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/oklog/ulid@v1.3.1" rel="nofollow noreferrer noopener" target="_blank">github.com/oklog/ulid</a> v1.3.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/oklog/ulid@v1.3.1" rel="nofollow noreferrer noopener" target="_blank">CirwcVhetQ6Lv90oh/F+FBtV6XMibvdAFo93nm5qn4U=</a></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/pascaldekloe/goe@v0.0.0-20180627143212-57f6aae5913c" rel="nofollow noreferrer noopener" target="_blank">github.com/pascaldekloe/goe</a> v0.0.0-20180627143212-57f6aae5913c/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/pascaldekloe/goe@v0.0.0-20180627143212-57f6aae5913c" rel="nofollow noreferrer noopener" target="_blank">lzWF7FIEvWOWxwDKqyGYQf6ZUaNfKdP144TG7ZOy1lc=</a></span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/pelletier/go-toml@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/pelletier/go-toml</a> v1.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/pelletier/go-toml@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">5z9KED0ma1S8pY6P1sdut58dfprrGBbd/94hg7ilaic=</a></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/pkg/errors@v0.8.0" rel="nofollow noreferrer noopener" target="_blank">github.com/pkg/errors</a> v0.8.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/pkg/errors@v0.8.0" rel="nofollow noreferrer noopener" target="_blank">bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0=</a></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/pkg/errors@v0.8.1" rel="nofollow noreferrer noopener" target="_blank">github.com/pkg/errors</a> v0.8.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/pkg/errors@v0.8.1" rel="nofollow noreferrer noopener" target="_blank">bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0=</a></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/pkg/errors@v0.9.1" rel="nofollow noreferrer noopener" target="_blank">github.com/pkg/errors</a> v0.9.1 h1:<a href="https://sum.golang.org/lookup/github.com/pkg/errors@v0.9.1" rel="nofollow noreferrer noopener" target="_blank">FEBLx1zS214owpjy7qsBeixbURkuhQAwrK5UwLGTwt4=</a></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/pkg/errors@v0.9.1" rel="nofollow noreferrer noopener" target="_blank">github.com/pkg/errors</a> v0.9.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/pkg/errors@v0.9.1" rel="nofollow noreferrer noopener" target="_blank">bwawxfHBFNV+L2hUp1rHADufV3IMtnDRdf1r5NINEl0=</a></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/pmezard/go-difflib@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/pmezard/go-difflib</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/pmezard/go-difflib@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">iKH77koFhYxTK1pcRnkKkqfTogsbg7gZNVY4sRDYZ/4=</a></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/posener/complete@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/posener/complete</a> v1.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/posener/complete@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">em0nMJCgc9GFtwrmVmEMR/ZL6WyhyjMBndrE9hABlRI=</a></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/client_golang@v0.9.1" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/client_golang</a> v0.9.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/client_golang@v0.9.1" rel="nofollow noreferrer noopener" target="_blank">7SWBe2y4D6OKWSNQJUaRYU/AaXPKyh/dDVn+NZz0KFw=</a></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/client_golang@v0.9.3" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/client_golang</a> v0.9.3/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/client_golang@v0.9.3" rel="nofollow noreferrer noopener" target="_blank">/TN21ttK/J9q6uSwhBd54HahCDft0ttaMvbicHlPoso=</a></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/client_model@v0.0.0-20180712105110-5c3871d89910" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/client_model</a> v0.0.0-20180712105110-5c3871d89910/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/client_model@v0.0.0-20180712105110-5c3871d89910" rel="nofollow noreferrer noopener" target="_blank">MbSGuTsp3dbXC40dX6PRTWyKYBIrTGTE9sqQNg2J8bo=</a></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/client_model@v0.0.0-20190129233127-fd36f4220a90" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/client_model</a> v0.0.0-20190129233127-fd36f4220a90/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/client_model@v0.0.0-20190129233127-fd36f4220a90" rel="nofollow noreferrer noopener" target="_blank">xMI15A0UPsDsEKsMN9yxemIoYk6Tm2C1GtYGdfGttqA=</a></span>
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/common@v0.0.0-20181113130724-41aa239b4cce" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/common</a> v0.0.0-20181113130724-41aa239b4cce/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/common@v0.0.0-20181113130724-41aa239b4cce" rel="nofollow noreferrer noopener" target="_blank">daVV7qP5qjZbuso7PdcryaAu0sAZbrN9i7WWcTMWvro=</a></span>
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/common@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/common</a> v0.4.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/common@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">TNfzLD0ON7rHzMJeJkieUDPYmFC7Snx/y86RQel1bk4=</a></span>
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/procfs@v0.0.0-20181005140218-185b4288413d" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/procfs</a> v0.0.0-20181005140218-185b4288413d/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/procfs@v0.0.0-20181005140218-185b4288413d" rel="nofollow noreferrer noopener" target="_blank">c3At6R/oaqEKCNdg8wHV1ftS6bRYblBhIjjI8uT2IGk=</a></span>
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/procfs@v0.0.0-20190507164030-5867b95ac084" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/procfs</a> v0.0.0-20190507164030-5867b95ac084/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/procfs@v0.0.0-20190507164030-5867b95ac084" rel="nofollow noreferrer noopener" target="_blank">TjEm7ze935MbeOT/UhFTIMYKhuLP4wbCsTZCD3I8kEA=</a></span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/prometheus/tsdb@v0.7.1" rel="nofollow noreferrer noopener" target="_blank">github.com/prometheus/tsdb</a> v0.7.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/prometheus/tsdb@v0.7.1" rel="nofollow noreferrer noopener" target="_blank">qhTCs0VvXwvX/y3TZrWD7rabWM+ijKTux40TwIPHuXU=</a></span>
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/remyoudompheng/bigfft@v0.0.0-20200410134404-eec4a21b6bb0" rel="nofollow noreferrer noopener" target="_blank">github.com/remyoudompheng/bigfft</a> v0.0.0-20200410134404-eec4a21b6bb0 h1:<a href="https://sum.golang.org/lookup/github.com/remyoudompheng/bigfft@v0.0.0-20200410134404-eec4a21b6bb0" rel="nofollow noreferrer noopener" target="_blank">OdAsTTz6OkFY5QxjkYwrChwuRruF69c169dPK26NUlk=</a></span>
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/remyoudompheng/bigfft@v0.0.0-20200410134404-eec4a21b6bb0" rel="nofollow noreferrer noopener" target="_blank">github.com/remyoudompheng/bigfft</a> v0.0.0-20200410134404-eec4a21b6bb0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/remyoudompheng/bigfft@v0.0.0-20200410134404-eec4a21b6bb0" rel="nofollow noreferrer noopener" target="_blank">qqbHyh8v60DhA7CoWK5oRCqLrMHRGoxYCSS9EjAz6Eo=</a></span>
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/rogpeppe/fastuuid@v0.0.0-20150106093220-6724a57986af" rel="nofollow noreferrer noopener" target="_blank">github.com/rogpeppe/fastuuid</a> v0.0.0-20150106093220-6724a57986af/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/rogpeppe/fastuuid@v0.0.0-20150106093220-6724a57986af" rel="nofollow noreferrer noopener" target="_blank">XWv6SoW27p1b0cqNHllgS5HIMJraePCO15w5zCzIWYg=</a></span>
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/rogpeppe/go-internal@v1.3.0" rel="nofollow noreferrer noopener" target="_blank">github.com/rogpeppe/go-internal</a> v1.3.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/rogpeppe/go-internal@v1.3.0" rel="nofollow noreferrer noopener" target="_blank">M8bDsm7K2OlrFYOpmOWEs/qY81heoFRclV5y23lUDJ4=</a></span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/russross/blackfriday/v2@v2.0.1" rel="nofollow noreferrer noopener" target="_blank">github.com/russross/blackfriday/v2</a> v2.0.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/russross/blackfriday/v2@v2.0.1" rel="nofollow noreferrer noopener" target="_blank">+Rmxgy9KzJVeS9/2gXHxylqXiyQDYRxCVz55jmeOWTM=</a></span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/ryanuber/columnize@v0.0.0-20160712163229-9b3edd62028f" rel="nofollow noreferrer noopener" target="_blank">github.com/ryanuber/columnize</a> v0.0.0-20160712163229-9b3edd62028f/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/ryanuber/columnize@v0.0.0-20160712163229-9b3edd62028f" rel="nofollow noreferrer noopener" target="_blank">sm1tb6uqfes/u+d4ooFouqFdy9/2g9QGwK3SQygK0Ts=</a></span>
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/sean-/seed@v0.0.0-20170313163322-e2103e2c3529" rel="nofollow noreferrer noopener" target="_blank">github.com/sean-/seed</a> v0.0.0-20170313163322-e2103e2c3529/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/sean-/seed@v0.0.0-20170313163322-e2103e2c3529" rel="nofollow noreferrer noopener" target="_blank">DxrIzT+xaE7yg65j358z/aeFdxmN0P9QXhEzd20vsDc=</a></span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/bio@v0.0.0-20201213090627-18e3e643a476" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bio</a> v0.0.0-20201213090627-18e3e643a476 h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/bio@v0.0.0-20201213090627-18e3e643a476" rel="nofollow noreferrer noopener" target="_blank">PE3sUBFeHWFNLsrQ7Blyk4duI+emVGKQ1+iYo4ZalKk=</a></span>
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/bio@v0.0.0-20201213090627-18e3e643a476" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bio</a> v0.0.0-20201213090627-18e3e643a476/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/bio@v0.0.0-20201213090627-18e3e643a476" rel="nofollow noreferrer noopener" target="_blank">tKIebGVfqYwgLIoXohkLiQO685B2d3l9vTf1cjRZaVk=</a></span>
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/bpool@v0.0.0-20160710042833-f9e0ee4d0403" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bpool</a> v0.0.0-20160710042833-f9e0ee4d0403 h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/bpool@v0.0.0-20160710042833-f9e0ee4d0403" rel="nofollow noreferrer noopener" target="_blank">/3JklLnHXiWUBxWc3joQYavDQJpncRhRA909cUb7eOw=</a></span>
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/bpool@v0.0.0-20160710042833-f9e0ee4d0403" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bpool</a> v0.0.0-20160710042833-f9e0ee4d0403/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/bpool@v0.0.0-20160710042833-f9e0ee4d0403" rel="nofollow noreferrer noopener" target="_blank">YkgdTWfNnJgv5HVJbVSDmxQtkK3/jZWDoqcG26BVU8k=</a></span>
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/breader@v0.0.0-20170924140440-21f0a70fe179" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/breader</a> v0.0.0-20170924140440-21f0a70fe179 h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/breader@v0.0.0-20170924140440-21f0a70fe179" rel="nofollow noreferrer noopener" target="_blank">MZiEG6aN8j1A0jXzCzyZM2BM6ZHbePYiwR4FXgUTCCk=</a></span>
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/breader@v0.0.0-20170924140440-21f0a70fe179" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/breader</a> v0.0.0-20170924140440-21f0a70fe179/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/breader@v0.0.0-20170924140440-21f0a70fe179" rel="nofollow noreferrer noopener" target="_blank">Yb9qYJ2qJolWeqIVS1LG5ylHTLI5ZfbVFEJJouF2DsY=</a></span>
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/bwt@v0.0.0-20200418151221-ae79c9858c90" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bwt</a> v0.0.0-20200418151221-ae79c9858c90 h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/bwt@v0.0.0-20200418151221-ae79c9858c90" rel="nofollow noreferrer noopener" target="_blank">c8Er9GmVclwt002/ZxVx7WOThpmPKNR4rehAXxICTII=</a></span>
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/bwt@v0.0.0-20200418151221-ae79c9858c90" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/bwt</a> v0.0.0-20200418151221-ae79c9858c90/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/bwt@v0.0.0-20200418151221-ae79c9858c90" rel="nofollow noreferrer noopener" target="_blank">q4esDgocpgU8CcnXuPNun+hGv+VDXGX+NnXHQaHGRCU=</a></span>
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/go-logging@v0.0.0-20171012171522-c6b9702d88ba" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/go-logging</a> v0.0.0-20171012171522-c6b9702d88ba h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/go-logging@v0.0.0-20171012171522-c6b9702d88ba" rel="nofollow noreferrer noopener" target="_blank">UvnrxFDPmz7agYX0eQ2JEorTKn1ORnZ9dT5OzbjPvK8=</a></span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/go-logging@v0.0.0-20171012171522-c6b9702d88ba" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/go-logging</a> v0.0.0-20171012171522-c6b9702d88ba/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/go-logging@v0.0.0-20171012171522-c6b9702d88ba" rel="nofollow noreferrer noopener" target="_blank">LiqYp/K5yCEWOi7Ux/iOF/kjDxtsdYjOGcKHDbEOXFU=</a></span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/natsort@v0.0.0-20190418160752-600d539c017d" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/natsort</a> v0.0.0-20190418160752-600d539c017d h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/natsort@v0.0.0-20190418160752-600d539c017d" rel="nofollow noreferrer noopener" target="_blank">eeXLHcXyGEr72V1SOSEI7vSzUOTJvHutwF7Ykm+hscQ=</a></span>
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/shenwei356/util@v0.0.0-20201214054755-2942125340cd" rel="nofollow noreferrer noopener" target="_blank">github.com/shenwei356/util</a> v0.0.0-20201214054755-2942125340cd h1:<a href="https://sum.golang.org/lookup/github.com/shenwei356/util@v0.0.0-20201214054755-2942125340cd" rel="nofollow noreferrer noopener" target="_blank">11sa/TyR/91v63OA9VnyjRontqtsDFZN1wCLNaaAa38=</a></span>
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/smallfish/simpleyaml@v0.0.0-20170911015856-a32031077861" rel="nofollow noreferrer noopener" target="_blank">github.com/smallfish/simpleyaml</a> v0.0.0-20170911015856-a32031077861 h1:<a href="https://sum.golang.org/lookup/github.com/smallfish/simpleyaml@v0.0.0-20170911015856-a32031077861" rel="nofollow noreferrer noopener" target="_blank">9z0Ip656Pc+3cj/BpHkErOVg4iE0xcAdvJwfA3hMVzU=</a></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/smartystreets/assertions@v0.0.0-20180927180507-b2de0cb4f26d" rel="nofollow noreferrer noopener" target="_blank">github.com/smartystreets/assertions</a> v0.0.0-20180927180507-b2de0cb4f26d/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/smartystreets/assertions@v0.0.0-20180927180507-b2de0cb4f26d" rel="nofollow noreferrer noopener" target="_blank">OnSkiWE9lh6wB0YB77sQom3nweQdgAjqCqsofrRNTgc=</a></span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/smartystreets/goconvey@v1.6.4" rel="nofollow noreferrer noopener" target="_blank">github.com/smartystreets/goconvey</a> v1.6.4/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/smartystreets/goconvey@v1.6.4" rel="nofollow noreferrer noopener" target="_blank">syvi0/a8iFYH4r/RixwvyeAJjdLS9QV7WQ/tjFTllLA=</a></span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/soheilhy/cmux@v0.1.4" rel="nofollow noreferrer noopener" target="_blank">github.com/soheilhy/cmux</a> v0.1.4/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/soheilhy/cmux@v0.1.4" rel="nofollow noreferrer noopener" target="_blank">IM3LyeVVIOuxMH7sFAkER9+bJ4dT7Ms6E4xg4kGIyLM=</a></span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spaolacci/murmur3@v0.0.0-20180118202830-f09979ecbc72" rel="nofollow noreferrer noopener" target="_blank">github.com/spaolacci/murmur3</a> v0.0.0-20180118202830-f09979ecbc72 h1:<a href="https://sum.golang.org/lookup/github.com/spaolacci/murmur3@v0.0.0-20180118202830-f09979ecbc72" rel="nofollow noreferrer noopener" target="_blank">qLC7fQah7D6K1B0ujays3HV9gkFtllcxhzImRR7ArPQ=</a></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spaolacci/murmur3@v0.0.0-20180118202830-f09979ecbc72" rel="nofollow noreferrer noopener" target="_blank">github.com/spaolacci/murmur3</a> v0.0.0-20180118202830-f09979ecbc72/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spaolacci/murmur3@v0.0.0-20180118202830-f09979ecbc72" rel="nofollow noreferrer noopener" target="_blank">JwIasOWyU6f++ZhiEuf87xNszmSA2myDM2Kzu9HwQUA=</a></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/afero@v1.1.2" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/afero</a> v1.1.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spf13/afero@v1.1.2" rel="nofollow noreferrer noopener" target="_blank">j4pytiNVoe2o6bmDsKpLACNPDBIoEAkihy7loJ1B0CQ=</a></span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/cast@v1.3.0" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/cast</a> v1.3.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spf13/cast@v1.3.0" rel="nofollow noreferrer noopener" target="_blank">Qx5cxh0v+4UWYiBimWS+eyWzqEqokIECu5etghLkUJE=</a></span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/cobra@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/cobra</a> v1.1.1 h1:<a href="https://sum.golang.org/lookup/github.com/spf13/cobra@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">KfztREH0tPxJJ+geloSLaAkaPkr4ki2Er5quFV1TDo4=</a></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/cobra@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/cobra</a> v1.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spf13/cobra@v1.1.1" rel="nofollow noreferrer noopener" target="_blank">WnodtKOvamDL/PwE2M4iKs8aMDBZ5Q5klgD3qfVJQMI=</a></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/jwalterweatherman@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/jwalterweatherman</a> v1.0.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spf13/jwalterweatherman@v1.0.0" rel="nofollow noreferrer noopener" target="_blank">cQK4TGJAtQXfYWX+Ddv3mKDzgVb68N+wFjFa4jdeBTo=</a></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/pflag@v1.0.3" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/pflag</a> v1.0.3/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spf13/pflag@v1.0.3" rel="nofollow noreferrer noopener" target="_blank">DYY7MBk1bdzusC3SYhjObp+wFpr4gzcvqqNjLnInEg4=</a></span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/pflag@v1.0.5" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/pflag</a> v1.0.5 h1:<a href="https://sum.golang.org/lookup/github.com/spf13/pflag@v1.0.5" rel="nofollow noreferrer noopener" target="_blank">iy+VFUOCP1a+8yFto/drg2CJ5u0yRoB7fZw3DKv/JXA=</a></span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/pflag@v1.0.5" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/pflag</a> v1.0.5/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spf13/pflag@v1.0.5" rel="nofollow noreferrer noopener" target="_blank">McXfInJRrz4CZXVZOBLb0bTZqETkiAhM9Iw0y3An2Bg=</a></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/spf13/viper@v1.7.0" rel="nofollow noreferrer noopener" target="_blank">github.com/spf13/viper</a> v1.7.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/spf13/viper@v1.7.0" rel="nofollow noreferrer noopener" target="_blank">8WkrPz2fc9jxqZNCJI/76HCieCp4Q8HaLFoCha5qpdg=</a></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/stretchr/objx@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">github.com/stretchr/objx</a> v0.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/stretchr/objx@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=</a></span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/stretchr/objx@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">github.com/stretchr/objx</a> v0.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/stretchr/objx@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">HFkY916IF+rwdDfMAkV7OtwuqBVzrE8GR6GFx+wExME=</a></span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/stretchr/testify@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">github.com/stretchr/testify</a> v1.2.2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/stretchr/testify@v1.2.2" rel="nofollow noreferrer noopener" target="_blank">a8OnRcib4nhh0OaRAV+Yts87kKdq0PP7pXfy6kDkUVs=</a></span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/stretchr/testify@v1.3.0" rel="nofollow noreferrer noopener" target="_blank">github.com/stretchr/testify</a> v1.3.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/stretchr/testify@v1.3.0" rel="nofollow noreferrer noopener" target="_blank">M5WIy9Dh21IEIfnGCwXGc5bZfKNJtfHm1UVUgZn+9EI=</a></span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/subosito/gotenv@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">github.com/subosito/gotenv</a> v1.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/subosito/gotenv@v1.2.0" rel="nofollow noreferrer noopener" target="_blank">N0PQaV/YGNqwC0u51sEeR/aUtSLEXKX9iv69rRypqCw=</a></span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/tatsushid/go-prettytable@v0.0.0-20141013043238-ed2d14c29939" rel="nofollow noreferrer noopener" target="_blank">github.com/tatsushid/go-prettytable</a> v0.0.0-20141013043238-ed2d14c29939 h1:<a href="https://sum.golang.org/lookup/github.com/tatsushid/go-prettytable@v0.0.0-20141013043238-ed2d14c29939" rel="nofollow noreferrer noopener" target="_blank">BhIUXV2ySTLrKgh/Hnts+QTQlIbWtomXt3LMdzME0A0=</a></span>
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/tatsushid/go-prettytable@v0.0.0-20141013043238-ed2d14c29939" rel="nofollow noreferrer noopener" target="_blank">github.com/tatsushid/go-prettytable</a> v0.0.0-20141013043238-ed2d14c29939/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/tatsushid/go-prettytable@v0.0.0-20141013043238-ed2d14c29939" rel="nofollow noreferrer noopener" target="_blank">omGxs4/6hNjxPKUTjmaNkPzehSnNJOJN6pMEbrlYIT4=</a></span>
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/tmc/grpc-websocket-proxy@v0.0.0-20190109142713-0ad062ec5ee5" rel="nofollow noreferrer noopener" target="_blank">github.com/tmc/grpc-websocket-proxy</a> v0.0.0-20190109142713-0ad062ec5ee5/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/tmc/grpc-websocket-proxy@v0.0.0-20190109142713-0ad062ec5ee5" rel="nofollow noreferrer noopener" target="_blank">ncp9v5uamzpCO7NfCPTXjqaC+bZgJeR0sMTm6dMHP7U=</a></span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/ulikunitz/xz@v0.5.6" rel="nofollow noreferrer noopener" target="_blank">github.com/ulikunitz/xz</a> v0.5.6/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/ulikunitz/xz@v0.5.6" rel="nofollow noreferrer noopener" target="_blank">2bypXElzHzzJZwzH67Y6wb67pO62Rzfn7BSiF4ABRW8=</a></span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"><a href="https://pkg.go.dev/github.com/xiang90/probing@v0.0.0-20190116061207-43a291ad63a2" rel="nofollow noreferrer noopener" target="_blank">github.com/xiang90/probing</a> v0.0.0-20190116061207-43a291ad63a2/go.mod h1:<a href="https://sum.golang.org/lookup/github.com/xiang90/probing@v0.0.0-20190116061207-43a291ad63a2" rel="nofollow noreferrer noopener" target="_blank">UETIi67q53MR2AWcXfiuqkDkRtnGDLqkBTpCHuJHxtU=</a></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"><a href="https://pkg.go.dev/go.etcd.io/bbolt@v1.3.2" rel="nofollow noreferrer noopener" target="_blank">go.etcd.io/bbolt</a> v1.3.2/go.mod h1:<a href="https://sum.golang.org/lookup/go.etcd.io/bbolt@v1.3.2" rel="nofollow noreferrer noopener" target="_blank">IbVyRI1SCnLcuJnV2u8VeU0CEYM7e686BmAb1XKL+uU=</a></span>
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242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext"><a href="https://pkg.go.dev/go.opencensus.io@v0.21.0" rel="nofollow noreferrer noopener" target="_blank">go.opencensus.io</a> v0.21.0/go.mod h1:<a href="https://sum.golang.org/lookup/go.opencensus.io@v0.21.0" rel="nofollow noreferrer noopener" target="_blank">mSImk1erAIZhrmZN+AvHh14ztQfjbGwt4TtuofqLduU=</a></span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext"><a href="https://pkg.go.dev/go.opencensus.io@v0.22.0" rel="nofollow noreferrer noopener" target="_blank">go.opencensus.io</a> v0.22.0/go.mod h1:<a href="https://sum.golang.org/lookup/go.opencensus.io@v0.22.0" rel="nofollow noreferrer noopener" target="_blank">+kGneAE2xo2IficOXnaByMWTGM9T73dGwxeWcUqIpI8=</a></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"><a href="https://pkg.go.dev/go.uber.org/atomic@v1.4.0" rel="nofollow noreferrer noopener" target="_blank">go.uber.org/atomic</a> v1.4.0/go.mod h1:<a href="https://sum.golang.org/lookup/go.uber.org/atomic@v1.4.0" rel="nofollow noreferrer noopener" target="_blank">gD2HeocX3+yG+ygLZcrzQJaqmWj9AIm7n08wl/qW/PE=</a></span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext"><a href="https://pkg.go.dev/go.uber.org/multierr@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">go.uber.org/multierr</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/go.uber.org/multierr@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">wR5kodmAFQ0UK8QlbwjlSNy0Z68gJhDJUG5sjR94q/0=</a></span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"><a href="https://pkg.go.dev/go.uber.org/zap@v1.10.0" rel="nofollow noreferrer noopener" target="_blank">go.uber.org/zap</a> v1.10.0/go.mod h1:<a href="https://sum.golang.org/lookup/go.uber.org/zap@v1.10.0" rel="nofollow noreferrer noopener" target="_blank">vwi/ZaCAaUcBkycHslxD9B2zi4UTXhF60s6SWpuDF0Q=</a></span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/crypto@v0.0.0-20180904163835-0709b304e793" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/crypto</a> v0.0.0-20180904163835-0709b304e793/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/crypto@v0.0.0-20180904163835-0709b304e793" rel="nofollow noreferrer noopener" target="_blank">6SG95UA2DQfeDnfUPMdvaQW0Q7yPrPDi9nlGo2tz2b4=</a></span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/crypto@v0.0.0-20181029021203-45a5f77698d3" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/crypto</a> v0.0.0-20181029021203-45a5f77698d3/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/crypto@v0.0.0-20181029021203-45a5f77698d3" rel="nofollow noreferrer noopener" target="_blank">6SG95UA2DQfeDnfUPMdvaQW0Q7yPrPDi9nlGo2tz2b4=</a></span>
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/crypto@v0.0.0-20190308221718-c2843e01d9a2" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/crypto</a> v0.0.0-20190308221718-c2843e01d9a2/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/crypto@v0.0.0-20190308221718-c2843e01d9a2" rel="nofollow noreferrer noopener" target="_blank">djNgcEr1/C05ACkg1iLfiJU5Ep61QUkGW8qpdssI0+w=</a></span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/crypto@v0.0.0-20190510104115-cbcb75029529" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/crypto</a> v0.0.0-20190510104115-cbcb75029529/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/crypto@v0.0.0-20190510104115-cbcb75029529" rel="nofollow noreferrer noopener" target="_blank">yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI=</a></span>
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/crypto@v0.0.0-20190605123033-f99c8df09eb5" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/crypto</a> v0.0.0-20190605123033-f99c8df09eb5 h1:<a href="https://sum.golang.org/lookup/golang.org/x/crypto@v0.0.0-20190605123033-f99c8df09eb5" rel="nofollow noreferrer noopener" target="_blank">58fnuSXlxZmFdJyvtTFVmVhcMLU6v5fEb/ok4wyqtNU=</a></span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/crypto@v0.0.0-20190605123033-f99c8df09eb5" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/crypto</a> v0.0.0-20190605123033-f99c8df09eb5/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/crypto@v0.0.0-20190605123033-f99c8df09eb5" rel="nofollow noreferrer noopener" target="_blank">yigFU9vqHzYiE8UmvKecakEJjdnWj3jj499lnFckfCI=</a></span>
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20180321215751-8460e604b9de" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20180321215751-8460e604b9de/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20180321215751-8460e604b9de" rel="nofollow noreferrer noopener" target="_blank">CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=</a></span>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20180807140117-3d87b88a115f" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20180807140117-3d87b88a115f/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20180807140117-3d87b88a115f" rel="nofollow noreferrer noopener" target="_blank">CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=</a></span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20190121172915-509febef88a4" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20190121172915-509febef88a4/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20190121172915-509febef88a4" rel="nofollow noreferrer noopener" target="_blank">CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=</a></span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20190306152737-a1d7652674e8" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20190306152737-a1d7652674e8/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20190306152737-a1d7652674e8" rel="nofollow noreferrer noopener" target="_blank">CJ0aWSM057203Lf6IL+f9T1iT9GByDxfZKAQTCR3kQA=</a></span>
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20190510132918-efd6b22b2522" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20190510132918-efd6b22b2522/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20190510132918-efd6b22b2522" rel="nofollow noreferrer noopener" target="_blank">ZjyILWgesfNpC6sMxTJOJm9Kp84zZh5NQWvqDGG3Qr8=</a></span>
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20190829153037-c13cbed26979" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20190829153037-c13cbed26979/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20190829153037-c13cbed26979" rel="nofollow noreferrer noopener" target="_blank">86+5VVa7VpoJ4kLfm080zCjGlMRFzhUhsZKEZO7MGek=</a></span>
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20191030013958-a1ab85dbe136" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20191030013958-a1ab85dbe136/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20191030013958-a1ab85dbe136" rel="nofollow noreferrer noopener" target="_blank">JXzH8nQsPlswgeRAPE3MuO9GYsAcnJvJ4vnMwN/5qkY=</a></span>
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20200119233911-0405dc783f0a" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20200119233911-0405dc783f0a h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20200119233911-0405dc783f0a" rel="nofollow noreferrer noopener" target="_blank">7Wlg8L54In96HTWOaI4sreLJ6qfyGuvSau5el3fK41Y=</a></span>
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/exp@v0.0.0-20200119233911-0405dc783f0a" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/exp</a> v0.0.0-20200119233911-0405dc783f0a/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/exp@v0.0.0-20200119233911-0405dc783f0a" rel="nofollow noreferrer noopener" target="_blank">2RIsYlXP63K8oxa1u096TMicItID8zy7Y6sNkU49FU4=</a></span>
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/image@v0.0.0-20180708004352-c73c2afc3b81" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/image</a> v0.0.0-20180708004352-c73c2afc3b81/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/image@v0.0.0-20180708004352-c73c2afc3b81" rel="nofollow noreferrer noopener" target="_blank">ux5Hcp/YLpHSI86hEcLt0YII63i6oz57MZXIpbrjZUs=</a></span>
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/image@v0.0.0-20190227222117-0694c2d4d067" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/image</a> v0.0.0-20190227222117-0694c2d4d067/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/image@v0.0.0-20190227222117-0694c2d4d067" rel="nofollow noreferrer noopener" target="_blank">kZ7UVZpmo3dzQBMxlp+ypCbDeSB+sBbTgSJuh5dn5js=</a></span>
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/image@v0.0.0-20190802002840-cff245a6509b" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/image</a> v0.0.0-20190802002840-cff245a6509b h1:<a href="https://sum.golang.org/lookup/golang.org/x/image@v0.0.0-20190802002840-cff245a6509b" rel="nofollow noreferrer noopener" target="_blank">+qEpEAPhDZ1o0x3tHzZTQDArnOixOzGD9HUJfcg0mb4=</a></span>
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/image@v0.0.0-20190802002840-cff245a6509b" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/image</a> v0.0.0-20190802002840-cff245a6509b/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/image@v0.0.0-20190802002840-cff245a6509b" rel="nofollow noreferrer noopener" target="_blank">FeLwcggjj3mMvU+oOTbSwawSJRM1uh48EjtB4UJZlP0=</a></span>
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/lint@v0.0.0-20181026193005-c67002cb31c3" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/lint</a> v0.0.0-20181026193005-c67002cb31c3/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/lint@v0.0.0-20181026193005-c67002cb31c3" rel="nofollow noreferrer noopener" target="_blank">UVdnD1Gm6xHRNCYTkRU2/jEulfH38KcIWyp/GAMgvoE=</a></span>
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/lint@v0.0.0-20190227174305-5b3e6a55c961" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/lint</a> v0.0.0-20190227174305-5b3e6a55c961/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/lint@v0.0.0-20190227174305-5b3e6a55c961" rel="nofollow noreferrer noopener" target="_blank">wehouNa3lNwaWXcvxsM5YxQ5yQlVC4a0KAMCusXpPoU=</a></span>
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/lint@v0.0.0-20190301231843-5614ed5bae6f" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/lint</a> v0.0.0-20190301231843-5614ed5bae6f/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/lint@v0.0.0-20190301231843-5614ed5bae6f" rel="nofollow noreferrer noopener" target="_blank">UVdnD1Gm6xHRNCYTkRU2/jEulfH38KcIWyp/GAMgvoE=</a></span>
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/lint@v0.0.0-20190313153728-d0100b6bd8b3" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/lint</a> v0.0.0-20190313153728-d0100b6bd8b3/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/lint@v0.0.0-20190313153728-d0100b6bd8b3" rel="nofollow noreferrer noopener" target="_blank">6SW0HCj/g11FgYtHlgUYUwCkIfeOF89ocIRzGO/8vkc=</a></span>
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/lint@v0.0.0-20190409202823-959b441ac422" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/lint</a> v0.0.0-20190409202823-959b441ac422/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/lint@v0.0.0-20190409202823-959b441ac422" rel="nofollow noreferrer noopener" target="_blank">6SW0HCj/g11FgYtHlgUYUwCkIfeOF89ocIRzGO/8vkc=</a></span>
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/lint@v0.0.0-20190909230951-414d861bb4ac" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/lint</a> v0.0.0-20190909230951-414d861bb4ac/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/lint@v0.0.0-20190909230951-414d861bb4ac" rel="nofollow noreferrer noopener" target="_blank">6SW0HCj/g11FgYtHlgUYUwCkIfeOF89ocIRzGO/8vkc=</a></span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/lint@v0.0.0-20190930215403-16217165b5de" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/lint</a> v0.0.0-20190930215403-16217165b5de/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/lint@v0.0.0-20190930215403-16217165b5de" rel="nofollow noreferrer noopener" target="_blank">6SW0HCj/g11FgYtHlgUYUwCkIfeOF89ocIRzGO/8vkc=</a></span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/mobile@v0.0.0-20190312151609-d3739f865fa6" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/mobile</a> v0.0.0-20190312151609-d3739f865fa6/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/mobile@v0.0.0-20190312151609-d3739f865fa6" rel="nofollow noreferrer noopener" target="_blank">z+o9i4GpDbdi3rU15maQ/Ox0txvL9dWGYEHz965HBQE=</a></span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/mobile@v0.0.0-20190719004257-d2bd2a29d028" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/mobile</a> v0.0.0-20190719004257-d2bd2a29d028/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/mobile@v0.0.0-20190719004257-d2bd2a29d028" rel="nofollow noreferrer noopener" target="_blank">E/iHnbuqvinMTCcRqshq8CkpyQDoeVncDDYHnLhea+o=</a></span>
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/mod@v0.0.0-20190513183733-4bf6d317e70e" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/mod</a> v0.0.0-20190513183733-4bf6d317e70e/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/mod@v0.0.0-20190513183733-4bf6d317e70e" rel="nofollow noreferrer noopener" target="_blank">mXi4GBBbnImb6dmsKGUJ2LatrhH/nqhxcFungHvyanc=</a></span>
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/mod@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/mod</a> v0.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/mod@v0.1.0" rel="nofollow noreferrer noopener" target="_blank">0QHyrYULN0/3qlju5TqG8bIK38QM8yzMo5ekMj3DlcY=</a></span>
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20180724234803-3673e40ba225" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20180724234803-3673e40ba225/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20180724234803-3673e40ba225" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20180826012351-8a410e7b638d" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20180826012351-8a410e7b638d/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20180826012351-8a410e7b638d" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20181023162649-9b4f9f5ad519" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20181023162649-9b4f9f5ad519/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20181023162649-9b4f9f5ad519" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20181114220301-adae6a3d119a" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20181114220301-adae6a3d119a/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20181114220301-adae6a3d119a" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20181201002055-351d144fa1fc" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20181201002055-351d144fa1fc/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20181201002055-351d144fa1fc" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20181220203305-927f97764cc3" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20181220203305-927f97764cc3/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20181220203305-927f97764cc3" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190108225652-1e06a53dbb7e" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190108225652-1e06a53dbb7e/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190108225652-1e06a53dbb7e" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190213061140-3a22650c66bd" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190213061140-3a22650c66bd/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190213061140-3a22650c66bd" rel="nofollow noreferrer noopener" target="_blank">mL1N/T3taQHkDXs73rZJwtUhF3w3ftmwwsq0BUmARs4=</a></span>
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190311183353-d8887717615a" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190311183353-d8887717615a/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190311183353-d8887717615a" rel="nofollow noreferrer noopener" target="_blank">t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=</a></span>
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190404232315-eb5bcb51f2a3" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190404232315-eb5bcb51f2a3/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190404232315-eb5bcb51f2a3" rel="nofollow noreferrer noopener" target="_blank">t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=</a></span>
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190501004415-9ce7a6920f09" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190501004415-9ce7a6920f09/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190501004415-9ce7a6920f09" rel="nofollow noreferrer noopener" target="_blank">t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=</a></span>
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190503192946-f4e77d36d62c" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190503192946-f4e77d36d62c/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190503192946-f4e77d36d62c" rel="nofollow noreferrer noopener" target="_blank">t9HGtf8HONx5eT2rtn7q6eTqICYqUVnKs3thJo3Qplg=</a></span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190603091049-60506f45cf65" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190603091049-60506f45cf65/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190603091049-60506f45cf65" rel="nofollow noreferrer noopener" target="_blank">HSz+uSET+XFnRR8LxR5pz3Of3rY3CfYBVs4xY44aLks=</a></span>
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/net@v0.0.0-20190620200207-3b0461eec859" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/net</a> v0.0.0-20190620200207-3b0461eec859/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/net@v0.0.0-20190620200207-3b0461eec859" rel="nofollow noreferrer noopener" target="_blank">z5CRVTTTmAJ677TzLLGU+0bjPO0LkuOLi4/5GtJWs/s=</a></span>
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/oauth2@v0.0.0-20180821212333-d2e6202438be" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/oauth2</a> v0.0.0-20180821212333-d2e6202438be/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/oauth2@v0.0.0-20180821212333-d2e6202438be" rel="nofollow noreferrer noopener" target="_blank">N/0e6XlmueqKjAGxoOufVs8QHGRruUQn6yWY3a++T0U=</a></span>
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/oauth2@v0.0.0-20190226205417-e64efc72b421" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/oauth2</a> v0.0.0-20190226205417-e64efc72b421/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/oauth2@v0.0.0-20190226205417-e64efc72b421" rel="nofollow noreferrer noopener" target="_blank">gOpvHmFTYa4IltrdGE7lF6nIHvwfUNPOp7c8zoXwtLw=</a></span>
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/oauth2@v0.0.0-20190604053449-0f29369cfe45" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/oauth2</a> v0.0.0-20190604053449-0f29369cfe45/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/oauth2@v0.0.0-20190604053449-0f29369cfe45" rel="nofollow noreferrer noopener" target="_blank">gOpvHmFTYa4IltrdGE7lF6nIHvwfUNPOp7c8zoXwtLw=</a></span>
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sync@v0.0.0-20180314180146-1d60e4601c6f" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sync</a> v0.0.0-20180314180146-1d60e4601c6f/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sync@v0.0.0-20180314180146-1d60e4601c6f" rel="nofollow noreferrer noopener" target="_blank">RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=</a></span>
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sync@v0.0.0-20181108010431-42b317875d0f" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sync</a> v0.0.0-20181108010431-42b317875d0f/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sync@v0.0.0-20181108010431-42b317875d0f" rel="nofollow noreferrer noopener" target="_blank">RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=</a></span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sync@v0.0.0-20181221193216-37e7f081c4d4" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sync</a> v0.0.0-20181221193216-37e7f081c4d4/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sync@v0.0.0-20181221193216-37e7f081c4d4" rel="nofollow noreferrer noopener" target="_blank">RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=</a></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sync@v0.0.0-20190227155943-e225da77a7e6" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sync</a> v0.0.0-20190227155943-e225da77a7e6/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sync@v0.0.0-20190227155943-e225da77a7e6" rel="nofollow noreferrer noopener" target="_blank">RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=</a></span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sync@v0.0.0-20190423024810-112230192c58" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sync</a> v0.0.0-20190423024810-112230192c58/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sync@v0.0.0-20190423024810-112230192c58" rel="nofollow noreferrer noopener" target="_blank">RxMgew5VJxzue5/jJTE5uejpjVlOe/izrB70Jof72aM=</a></span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20180823144017-11551d06cbcc" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20180823144017-11551d06cbcc/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20180823144017-11551d06cbcc" rel="nofollow noreferrer noopener" target="_blank">STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=</a></span>
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20180830151530-49385e6e1522" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20180830151530-49385e6e1522/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20180830151530-49385e6e1522" rel="nofollow noreferrer noopener" target="_blank">STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=</a></span>
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20180905080454-ebe1bf3edb33" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20180905080454-ebe1bf3edb33/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20180905080454-ebe1bf3edb33" rel="nofollow noreferrer noopener" target="_blank">STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=</a></span>
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20181026203630-95b1ffbd15a5" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20181026203630-95b1ffbd15a5/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20181026203630-95b1ffbd15a5" rel="nofollow noreferrer noopener" target="_blank">STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=</a></span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20181107165924-66b7b1311ac8" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20181107165924-66b7b1311ac8/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20181107165924-66b7b1311ac8" rel="nofollow noreferrer noopener" target="_blank">STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=</a></span>
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20181116152217-5ac8a444bdc5" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20181116152217-5ac8a444bdc5/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20181116152217-5ac8a444bdc5" rel="nofollow noreferrer noopener" target="_blank">STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=</a></span>
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190215142949-d0b11bdaac8a" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190215142949-d0b11bdaac8a/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190215142949-d0b11bdaac8a" rel="nofollow noreferrer noopener" target="_blank">STP8DvDyc/dI5b8T5hshtkjS+E42TnysNCUPdjciGhY=</a></span>
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190312061237-fead79001313" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190312061237-fead79001313/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190312061237-fead79001313" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190412213103-97732733099d" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190412213103-97732733099d/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190412213103-97732733099d" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190502145724-3ef323f4f1fd" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190502145724-3ef323f4f1fd/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190502145724-3ef323f4f1fd" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190507160741-ecd444e8653b" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190507160741-ecd444e8653b/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190507160741-ecd444e8653b" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190602015325-4c4f7f33c9ed" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190602015325-4c4f7f33c9ed/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190602015325-4c4f7f33c9ed" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190606165138-5da285871e9c" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190606165138-5da285871e9c/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190606165138-5da285871e9c" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20190624142023-c5567b49c5d0" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20190624142023-c5567b49c5d0/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20190624142023-c5567b49c5d0" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20191005200804-aed5e4c7ecf9" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20191005200804-aed5e4c7ecf9/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20191005200804-aed5e4c7ecf9" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20200116001909-b77594299b42" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20200116001909-b77594299b42/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20200116001909-b77594299b42" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20200223170610-d5e6a3e2c0ae" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20200223170610-d5e6a3e2c0ae h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20200223170610-d5e6a3e2c0ae" rel="nofollow noreferrer noopener" target="_blank">/WDfKMnPU+m5M4xB+6x4kaepxRw6jWvR5iDRdvjHgy8=</a></span>
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/sys@v0.0.0-20200223170610-d5e6a3e2c0ae" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/sys</a> v0.0.0-20200223170610-d5e6a3e2c0ae/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/sys@v0.0.0-20200223170610-d5e6a3e2c0ae" rel="nofollow noreferrer noopener" target="_blank">h1NjWce9XRLGQEsW7wpKNCjG9DtNlClVuFLEZdDNbEs=</a></span>
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/text@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/text</a> v0.3.0/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/text@v0.3.0" rel="nofollow noreferrer noopener" target="_blank">NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=</a></span>
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318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/text@v0.3.1-0.20180807135948-17ff2d5776d2" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/text</a> v0.3.1-0.20180807135948-17ff2d5776d2/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/text@v0.3.1-0.20180807135948-17ff2d5776d2" rel="nofollow noreferrer noopener" target="_blank">NqM8EUOU14njkJ3fqMW+pc6Ldnwhi/IjpwHt7yyuwOQ=</a></span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/text@v0.3.2" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/text</a> v0.3.2/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/text@v0.3.2" rel="nofollow noreferrer noopener" target="_blank">bEr9sfX3Q8Zfm5fL9x+3itogRgK3+ptLWKqgva+5dAk=</a></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/time@v0.0.0-20181108054448-85acf8d2951c" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/time</a> v0.0.0-20181108054448-85acf8d2951c/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/time@v0.0.0-20181108054448-85acf8d2951c" rel="nofollow noreferrer noopener" target="_blank">tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=</a></span>
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/time@v0.0.0-20190308202827-9d24e82272b4" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/time</a> v0.0.0-20190308202827-9d24e82272b4/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/time@v0.0.0-20190308202827-9d24e82272b4" rel="nofollow noreferrer noopener" target="_blank">tRJNPiyCQ0inRvYxbN9jk5I+vvW/OXSQhTDSoE431IQ=</a></span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20180221164845-07fd8470d635" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20180221164845-07fd8470d635/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20180221164845-07fd8470d635" rel="nofollow noreferrer noopener" target="_blank">n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=</a></span>
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20180525024113-a5b4c53f6e8b" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20180525024113-a5b4c53f6e8b/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20180525024113-a5b4c53f6e8b" rel="nofollow noreferrer noopener" target="_blank">n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=</a></span>
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20180917221912-90fa682c2a6e" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20180917221912-90fa682c2a6e/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20180917221912-90fa682c2a6e" rel="nofollow noreferrer noopener" target="_blank">n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=</a></span>
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190114222345-bf090417da8b" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190114222345-bf090417da8b/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190114222345-bf090417da8b" rel="nofollow noreferrer noopener" target="_blank">n7NCudcB/nEzxVGmLbDWY5pfWTLqBcC2KZ6jyYvM4mQ=</a></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190226205152-f727befe758c" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190226205152-f727befe758c/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190226205152-f727befe758c" rel="nofollow noreferrer noopener" target="_blank">9Yl7xja0Znq3iFh3HoIrodX9oNMXvdceNzlUR8zjMvY=</a></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190311212946-11955173bddd" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190311212946-11955173bddd/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190311212946-11955173bddd" rel="nofollow noreferrer noopener" target="_blank">LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=</a></span>
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190312151545-0bb0c0a6e846" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190312151545-0bb0c0a6e846/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190312151545-0bb0c0a6e846" rel="nofollow noreferrer noopener" target="_blank">LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=</a></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190312170243-e65039ee4138" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190312170243-e65039ee4138/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190312170243-e65039ee4138" rel="nofollow noreferrer noopener" target="_blank">LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=</a></span>
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190328211700-ab21143f2384" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190328211700-ab21143f2384/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190328211700-ab21143f2384" rel="nofollow noreferrer noopener" target="_blank">LCzVGOaR6xXOjkQ3onu1FJEFr0SW1gC7cKk1uF8kGRs=</a></span>
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190425150028-36563e24a262" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190425150028-36563e24a262/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190425150028-36563e24a262" rel="nofollow noreferrer noopener" target="_blank">RgjU9mgBXZiqYHBnxXauZ1Gv1EHHAz9KjViQ78xBX0Q=</a></span>
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190506145303-2d16b83fe98c" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190506145303-2d16b83fe98c/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190506145303-2d16b83fe98c" rel="nofollow noreferrer noopener" target="_blank">RgjU9mgBXZiqYHBnxXauZ1Gv1EHHAz9KjViQ78xBX0Q=</a></span>
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190606050223-4d9ae51c2468" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190606050223-4d9ae51c2468/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190606050223-4d9ae51c2468" rel="nofollow noreferrer noopener" target="_blank">/rFqwRUd4F7ZHNgwSSTFct+R/Kf4OFW1sUzUTQQTgfc=</a></span>
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190606124116-d0a3d012864b" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190606124116-d0a3d012864b/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190606124116-d0a3d012864b" rel="nofollow noreferrer noopener" target="_blank">/rFqwRUd4F7ZHNgwSSTFct+R/Kf4OFW1sUzUTQQTgfc=</a></span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190816200558-6889da9d5479" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190816200558-6889da9d5479/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190816200558-6889da9d5479" rel="nofollow noreferrer noopener" target="_blank">b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=</a></span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext"><a href="https://pkg.go.dev/golang.org/x/tools@v0.0.0-20190911174233-4f2ddba30aff" rel="nofollow noreferrer noopener" target="_blank">golang.org/x/tools</a> v0.0.0-20190911174233-4f2ddba30aff/go.mod h1:<a href="https://sum.golang.org/lookup/golang.org/x/tools@v0.0.0-20190911174233-4f2ddba30aff" rel="nofollow noreferrer noopener" target="_blank">b+2E5dAYhXwXZwtnZ6UAqBI28+e2cm9otk0dWdXHAEo=</a></span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext"><a href="https://pkg.go.dev/gonum.org/v1/gonum@v0.0.0-20180816165407-929014505bf4" rel="nofollow noreferrer noopener" target="_blank">gonum.org/v1/gonum</a> v0.0.0-20180816165407-929014505bf4 h1:<a href="https://sum.golang.org/lookup/gonum.org/v1/gonum@v0.0.0-20180816165407-929014505bf4" rel="nofollow noreferrer noopener" target="_blank">nYxTaCPaVoJbxx+vMVnsFb6kw5+6aJCx52m/lmM/Vog=</a></span>
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext"><a href="https://pkg.go.dev/gonum.org/v1/gonum@v0.0.0-20180816165407-929014505bf4" rel="nofollow noreferrer noopener" target="_blank">gonum.org/v1/gonum</a> v0.0.0-20180816165407-929014505bf4/go.mod h1:<a href="https://sum.golang.org/lookup/gonum.org/v1/gonum@v0.0.0-20180816165407-929014505bf4" rel="nofollow noreferrer noopener" target="_blank">Y+Yx5eoAFn32cQvJDxZx5Dpnq+c3wtXuadVZAcxbbBo=</a></span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"><a href="https://pkg.go.dev/gonum.org/v1/plot@v0.0.0-20190515093506-e2840ee46a6b" rel="nofollow noreferrer noopener" target="_blank">gonum.org/v1/plot</a> v0.0.0-20190515093506-e2840ee46a6b h1:<a href="https://sum.golang.org/lookup/gonum.org/v1/plot@v0.0.0-20190515093506-e2840ee46a6b" rel="nofollow noreferrer noopener" target="_blank">Qh4dB5D/WpoUUp3lSod7qgoyEHbDGPUWjIbnqdqqe1k=</a></span>
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/api@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/api</a> v0.4.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/api@v0.4.0" rel="nofollow noreferrer noopener" target="_blank">8k5glujaEP+g9n7WNsDg8QP6cUVNI86fCNMcbazEtwE=</a></span>
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/api@v0.7.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/api</a> v0.7.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/api@v0.7.0" rel="nofollow noreferrer noopener" target="_blank">WtwebWUNSVBH/HAw79HIFXZNqEvBhG+Ra+ax0hx3E3M=</a></span>
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/api@v0.8.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/api</a> v0.8.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/api@v0.8.0" rel="nofollow noreferrer noopener" target="_blank">o4eAsZoiT+ibD93RtjEohWalFOjRDx6CVaqeizhEnKg=</a></span>
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/api@v0.9.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/api</a> v0.9.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/api@v0.9.0" rel="nofollow noreferrer noopener" target="_blank">o4eAsZoiT+ibD93RtjEohWalFOjRDx6CVaqeizhEnKg=</a></span>
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/api@v0.13.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/api</a> v0.13.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/api@v0.13.0" rel="nofollow noreferrer noopener" target="_blank">iLdEw5Ide6rF15KTC1Kkl0iskquN2gFfn9o9XIsbkAI=</a></span>
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/appengine@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/appengine</a> v1.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/appengine@v1.1.0" rel="nofollow noreferrer noopener" target="_blank">EbEs0AVv82hx2wNQdGPgUI5lhzA/G0D9YwlJXL52JkM=</a></span>
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/appengine@v1.4.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/appengine</a> v1.4.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/appengine@v1.4.0" rel="nofollow noreferrer noopener" target="_blank">xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4=</a></span>
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/appengine@v1.5.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/appengine</a> v1.5.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/appengine@v1.5.0" rel="nofollow noreferrer noopener" target="_blank">xpcJRLb0r/rnEns0DIKYYv+WjYCduHsrkT7/EB5XEv4=</a></span>
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/appengine@v1.6.1" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/appengine</a> v1.6.1/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/appengine@v1.6.1" rel="nofollow noreferrer noopener" target="_blank">i06prIuMbXzDqacNJfV5OdTW448YApPu5ww/cMBSeb0=</a></span>
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20180817151627-c66870c02cf8" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20180817151627-c66870c02cf8/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20180817151627-c66870c02cf8" rel="nofollow noreferrer noopener" target="_blank">JiN7NxoALGmiZfu7CAH4rXhgtRTLTxftemlI0sWmxmc=</a></span>
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20190307195333-5fe7a883aa19" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20190307195333-5fe7a883aa19/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20190307195333-5fe7a883aa19" rel="nofollow noreferrer noopener" target="_blank">VzzqZJRnGkLBvHegQrXjBqPurQTc5/KpmUdxsrq26oE=</a></span>
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20190418145605-e7d98fc518a7" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20190418145605-e7d98fc518a7/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20190418145605-e7d98fc518a7" rel="nofollow noreferrer noopener" target="_blank">VzzqZJRnGkLBvHegQrXjBqPurQTc5/KpmUdxsrq26oE=</a></span>
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20190425155659-357c62f0e4bb" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20190425155659-357c62f0e4bb/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20190425155659-357c62f0e4bb" rel="nofollow noreferrer noopener" target="_blank">VzzqZJRnGkLBvHegQrXjBqPurQTc5/KpmUdxsrq26oE=</a></span>
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20190502173448-54afdca5d873" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20190502173448-54afdca5d873/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20190502173448-54afdca5d873" rel="nofollow noreferrer noopener" target="_blank">VzzqZJRnGkLBvHegQrXjBqPurQTc5/KpmUdxsrq26oE=</a></span>
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20190801165951-fa694d86fc64" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20190801165951-fa694d86fc64/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20190801165951-fa694d86fc64" rel="nofollow noreferrer noopener" target="_blank">DMBHOl98Agz4BDEuKkezgsaosCRResVns1a3J2ZsMNc=</a></span>
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20190819201941-24fa4b261c55" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20190819201941-24fa4b261c55/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20190819201941-24fa4b261c55" rel="nofollow noreferrer noopener" target="_blank">DMBHOl98Agz4BDEuKkezgsaosCRResVns1a3J2ZsMNc=</a></span>
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20190911173649-1774047e7e51" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20190911173649-1774047e7e51/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20190911173649-1774047e7e51" rel="nofollow noreferrer noopener" target="_blank">IbNlFCBrqXvoKpeg0TB2l7cyZUmoaFKYIwrEpbDKLA8=</a></span>
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/genproto@v0.0.0-20191108220845-16a3f7862a1a" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/genproto</a> v0.0.0-20191108220845-16a3f7862a1a/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/genproto@v0.0.0-20191108220845-16a3f7862a1a" rel="nofollow noreferrer noopener" target="_blank">n3cpQtvxv34hfy77yVDNjmbRyujviMdxYliBSkLhpCc=</a></span>
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/grpc@v1.19.0" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/grpc</a> v1.19.0/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/grpc@v1.19.0" rel="nofollow noreferrer noopener" target="_blank">mqu4LbDTu4XGKhr4mRzUsmM4RtVoemTSY81AxZiDr8c=</a></span>
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/grpc@v1.20.1" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/grpc</a> v1.20.1/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/grpc@v1.20.1" rel="nofollow noreferrer noopener" target="_blank">10oTOabMzJvdu6/UiuZezV6QK5dSlG84ov/aaiqXj38=</a></span>
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"><a href="https://pkg.go.dev/google.golang.org/grpc@v1.21.1" rel="nofollow noreferrer noopener" target="_blank">google.golang.org/grpc</a> v1.21.1/go.mod h1:<a href="https://sum.golang.org/lookup/google.golang.org/grpc@v1.21.1" rel="nofollow noreferrer noopener" target="_blank">oYelfM1adQP15Ek0mdvEgi9Df8B9CZIaU1084ijfRaM=</a></span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/alecthomas/kingpin.v2@v2.2.6" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/alecthomas/kingpin.v2</a> v2.2.6/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/alecthomas/kingpin.v2@v2.2.6" rel="nofollow noreferrer noopener" target="_blank">FMv+mEhP44yOT+4EoQTLFTRgOQ1FBLkstjWtayDeSgw=</a></span>
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/check.v1@v0.0.0-20161208181325-20d25e280405" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/check.v1</a> v0.0.0-20161208181325-20d25e280405/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/check.v1@v0.0.0-20161208181325-20d25e280405" rel="nofollow noreferrer noopener" target="_blank">Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=</a></span>
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/check.v1@v1.0.0-20180628173108-788fd7840127" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/check.v1</a> v1.0.0-20180628173108-788fd7840127/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/check.v1@v1.0.0-20180628173108-788fd7840127" rel="nofollow noreferrer noopener" target="_blank">Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=</a></span>
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/check.v1@v1.0.0-20190902080502-41f04d3bba15" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/check.v1</a> v1.0.0-20190902080502-41f04d3bba15 h1:<a href="https://sum.golang.org/lookup/gopkg.in/check.v1@v1.0.0-20190902080502-41f04d3bba15" rel="nofollow noreferrer noopener" target="_blank">YR8cESwS4TdDjEe65xsg0ogRM/Nc3DYOhEAlW+xobZo=</a></span>
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/check.v1@v1.0.0-20190902080502-41f04d3bba15" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/check.v1</a> v1.0.0-20190902080502-41f04d3bba15/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/check.v1@v1.0.0-20190902080502-41f04d3bba15" rel="nofollow noreferrer noopener" target="_blank">Co6ibVJAznAaIkqp8huTwlJQCZ016jof/cbN4VW5Yz0=</a></span>
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/errgo.v2@v2.1.0" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/errgo.v2</a> v2.1.0/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/errgo.v2@v2.1.0" rel="nofollow noreferrer noopener" target="_blank">hNsd1EY+bozCKY1Ytp96fpM3vjJbqLJn88ws8XvfDNI=</a></span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/ini.v1@v1.51.0" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/ini.v1</a> v1.51.0/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/ini.v1@v1.51.0" rel="nofollow noreferrer noopener" target="_blank">pNLf8WUiyNEtQjuu5G5vTm06TEv9tsIgeAvK8hOrP4k=</a></span>
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/resty.v1@v1.12.0" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/resty.v1</a> v1.12.0/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/resty.v1@v1.12.0" rel="nofollow noreferrer noopener" target="_blank">mDo4pnntr5jdWRML875a/NmxYqAlA73dVijT2AXvQQo=</a></span>
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/yaml.v2@v2.0.0-20170812160011-eb3733d160e7" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/yaml.v2</a> v2.0.0-20170812160011-eb3733d160e7/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/yaml.v2@v2.0.0-20170812160011-eb3733d160e7" rel="nofollow noreferrer noopener" target="_blank">JAlM8MvJe8wmxCU4Bli9HhUf9+ttbYbLASfIpnQbh74=</a></span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/yaml.v2@v2.2.1" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/yaml.v2</a> v2.2.1/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/yaml.v2@v2.2.1" rel="nofollow noreferrer noopener" target="_blank">hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=</a></span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/yaml.v2@v2.2.4" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/yaml.v2</a> v2.2.4/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/yaml.v2@v2.2.4" rel="nofollow noreferrer noopener" target="_blank">hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=</a></span>
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/yaml.v2@v2.2.8" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/yaml.v2</a> v2.2.8 h1:<a href="https://sum.golang.org/lookup/gopkg.in/yaml.v2@v2.2.8" rel="nofollow noreferrer noopener" target="_blank">obN1ZagJSUGI0Ek/LBmuj4SNLPfIny3KsKFopxRdj10=</a></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext"><a href="https://pkg.go.dev/gopkg.in/yaml.v2@v2.2.8" rel="nofollow noreferrer noopener" target="_blank">gopkg.in/yaml.v2</a> v2.2.8/go.mod h1:<a href="https://sum.golang.org/lookup/gopkg.in/yaml.v2@v2.2.8" rel="nofollow noreferrer noopener" target="_blank">hI93XBmqTisBFMUTm0b8Fm+jr3Dg1NNxqwp+5A1VGuI=</a></span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext"><a href="https://pkg.go.dev/honnef.co/go/tools@v0.0.0-20190102054323-c2f93a96b099" rel="nofollow noreferrer noopener" target="_blank">honnef.co/go/tools</a> v0.0.0-20190102054323-c2f93a96b099/go.mod h1:<a href="https://sum.golang.org/lookup/honnef.co/go/tools@v0.0.0-20190102054323-c2f93a96b099" rel="nofollow noreferrer noopener" target="_blank">rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=</a></span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"><a href="https://pkg.go.dev/honnef.co/go/tools@v0.0.0-20190106161140-3f1c8253044a" rel="nofollow noreferrer noopener" target="_blank">honnef.co/go/tools</a> v0.0.0-20190106161140-3f1c8253044a/go.mod h1:<a href="https://sum.golang.org/lookup/honnef.co/go/tools@v0.0.0-20190106161140-3f1c8253044a" rel="nofollow noreferrer noopener" target="_blank">rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=</a></span>
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"><a href="https://pkg.go.dev/honnef.co/go/tools@v0.0.0-20190418001031-e561f6794a2a" rel="nofollow noreferrer noopener" target="_blank">honnef.co/go/tools</a> v0.0.0-20190418001031-e561f6794a2a/go.mod h1:<a href="https://sum.golang.org/lookup/honnef.co/go/tools@v0.0.0-20190418001031-e561f6794a2a" rel="nofollow noreferrer noopener" target="_blank">rf3lG4BRIbNafJWhAfAdb/ePZxsR/4RtNHQocxwk9r4=</a></span>
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"><a href="https://pkg.go.dev/honnef.co/go/tools@v0.0.1-2019.2.3" rel="nofollow noreferrer noopener" target="_blank">honnef.co/go/tools</a> v0.0.1-2019.2.3/go.mod h1:<a href="https://sum.golang.org/lookup/honnef.co/go/tools@v0.0.1-2019.2.3" rel="nofollow noreferrer noopener" target="_blank">a3bituU0lyd329TUQxRnasdCoJDkEUEAqEt0JzvZhAg=</a></span>
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext"><a href="https://pkg.go.dev/rsc.io/binaryregexp@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">rsc.io/binaryregexp</a> v0.2.0/go.mod h1:<a href="https://sum.golang.org/lookup/rsc.io/binaryregexp@v0.2.0" rel="nofollow noreferrer noopener" target="_blank">qTv7/COck+e2FymRvadv62gMdZztPaShugOCi3I+8D8=</a></span>
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext"><a href="https://pkg.go.dev/rsc.io/pdf@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">rsc.io/pdf</a> v0.1.1 h1:<a href="https://sum.golang.org/lookup/rsc.io/pdf@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">k1MczvYDUvJBe93bYd7wrZLLUEcLZAuF824/I4e5Xr4=</a></span>
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext"><a href="https://pkg.go.dev/rsc.io/pdf@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">rsc.io/pdf</a> v0.1.1/go.mod h1:<a href="https://sum.golang.org/lookup/rsc.io/pdf@v0.1.1" rel="nofollow noreferrer noopener" target="_blank">n8OzWcQ6Sp37PL01nO98y4iUCRdTGarVfzxY20ICaU4=</a></span></pre>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#6aac2ac8b11e949fae92fe504b39efb74c521140"><strong>seqkit/cmd/amplicon.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -51,6 +51,9 @@ var ampliconCmd = &cobra.Command{</td>
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51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="go"><span class="s" style="color: #d14;">Attentions:</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="go"><span class="s" style="color: #d14;"> 1. Only one (the longest) matching location is returned for every primer pair.</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="go"><span class="s" style="color: #d14;"> 2. Mismatch is allowed, but the mismatch location (5' or 3') is not controled. </span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="go"><span class="s" style="color: #d14;"> 3. Degenerate bases/residues like "RYMM.." are also supported.</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="go"><span class="s" style="color: #d14;"> But do not use degenerate bases/residues in regular expression, you need</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="go"><span class="s" style="color: #d14;"> convert them to regular expression, e.g., change "N" or "X" to ".".</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="go"><span class="s" style="color: #d14;">Examples:</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="go"><span class="s" style="color: #d14;"> 0. no region given.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,7 +138,7 @@ Examples:</td>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="go"> <span class="n" style="color: #333;">list</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">loadPrimers</span><span class="p">(</span><span class="n" style="color: #333;">primerFile</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="go"> <span class="n" style="color: #333;">list</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[][</span><span class="m" style="color: #099;">3</span><span class="p">]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">{<span class="idiff left">[</span></span><span class="m" style="color: #099;"><span class="idiff">3</span></span><span class="p"><span class="idiff">]</span></span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff right">string</span></span><span class="p">{</span><span class="s" style="color: #d14;">"."</span><span class="p">,</span> <span class="n" style="color: #333;">forward0</span><span class="p">,</span> <span class="n" style="color: #333;">reverse0</span><span class="p">}}</span></span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="go"> <span class="n" style="color: #333;">list</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[][</span><span class="m" style="color: #099;">3</span><span class="p">]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">{{</span><span class="s" style="color: #d14;">"."</span><span class="p">,</span> <span class="n" style="color: #333;">forward0</span><span class="p">,</span> <span class="n" style="color: #333;">reverse0</span><span class="p">}}</span></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="go"> <span class="p">}</span></span>
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140
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="go"></span>
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141
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<td class="diff-line-num new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="go"> <span class="n" style="color: #333;">primers</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">parsePrimers</span><span class="p">(</span><span class="n" style="color: #333;">list</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -261,7 +264,7 @@ func init() {</td>
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261
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264
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="go"></span>
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<td class="diff-line-num old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
262
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<td class="diff-line-num new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="go"> <span class="n" style="color: #333;">ampliconCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"forward"</span><span class="p">,</span> <span class="s" style="color: #d14;">"F"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"forward primer (5'-primer-3'), degenerate bases allowed"</span><span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
263
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<td class="diff-line-num new_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
266
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="go"> <span class="n" style="color: #333;">ampliconCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"reverse"</span><span class="p">,</span> <span class="s" style="color: #d14;">"R"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"reverse primer (5'-primer-3'), degenerate bases allowed"</span><span class="p">)</span></span>
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264
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="go"> <span class="n" style="color: #333;">ampliconCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IntP</span><span class="p">(</span><span class="s" style="color: #d14;">"max-mismatch"</span><span class="p">,</span> <span class="s" style="color: #d14;">"m"</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="s" style="color: #d14;">"max mismatch when matching primers"</span><span class="p">)</span></span>
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<td class="diff-line-num new old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="go"> <span class="n" style="color: #333;">ampliconCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IntP</span><span class="p">(</span><span class="s" style="color: #d14;">"max-mismatch"</span><span class="p">,</span> <span class="s" style="color: #d14;">"m"</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="s" style="color: #d14;">"max mismatch when matching primers<span class="idiff left right">, no degenerate bases allowed</span>"</span><span class="p">)</span></span>
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265
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<td class="diff-line-num new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="go"> <span class="n" style="color: #333;">ampliconCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"primer-file"</span><span class="p">,</span> <span class="s" style="color: #d14;">"p"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"3- or 2-column tabular primer file, with first column as primer name"</span><span class="p">)</span></span>
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266
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="go"></span>
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267
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="go"> <span class="n" style="color: #333;">ampliconCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"region"</span><span class="p">,</span> <span class="s" style="color: #d14;">"r"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">`specify region to return. type "seqkit amplicon -h" for detail`</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -374,6 +377,9 @@ func NewAmpliconFinder(sequence, forwardPrimer, reversePrimerRC []byte, maxMisma</td>
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374
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377
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="go"> <span class="n" style="color: #333;">finder</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FMindex</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">index</span></span>
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375
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<td class="diff-line-num new_line" data-linenumber="378" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
378
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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376
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<td class="diff-line-num new_line" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
379
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<pre style="margin: 0;"> <span id="LC379" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">DNA</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IsValid</span><span class="p">(</span><span class="n" style="color: #333;">finder</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">F</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// containing degenerate base</span></span>
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<td class="diff-line-num new new_line" data-linenumber="380" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">maxMismatch</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">"it does not support both degenerate base and mismatch"</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="go"> <span class="p">}</span></span>
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377
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<td class="diff-line-num new_line" data-linenumber="383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
383
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="go"> <span class="n" style="color: #333;">s</span><span class="p">,</span> <span class="n" style="color: #333;">_</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NewSeq</span><span class="p">(</span><span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">DNA</span><span class="p">,</span> <span class="n" style="color: #333;">finder</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">F</span><span class="p">)</span></span>
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378
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384
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="go"> <span class="n" style="color: #333;">rF</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">regexp</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Compile</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Degenerate2Regexp</span><span class="p">())</span></span>
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379
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385
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -383,6 +389,9 @@ func NewAmpliconFinder(sequence, forwardPrimer, reversePrimerRC []byte, maxMisma</td>
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383
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389
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<pre style="margin: 0;"> <span id="LC389" class="line" lang="go"> <span class="p">}</span></span>
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384
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390
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="go"></span>
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385
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<td class="diff-line-num new_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
391
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<pre style="margin: 0;"> <span id="LC391" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">DNA</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IsValid</span><span class="p">(</span><span class="n" style="color: #333;">finder</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">R</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// containing degenerate base</span></span>
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<td class="diff-line-num new new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">maxMismatch</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">"it does not support both degenerate base and mismatch"</span><span class="p">))</span></span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="go"> <span class="p">}</span></span>
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386
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395
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<pre style="margin: 0;"> <span id="LC395" class="line" lang="go"> <span class="n" style="color: #333;">s</span><span class="p">,</span> <span class="n" style="color: #333;">_</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NewSeq</span><span class="p">(</span><span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">DNA</span><span class="p">,</span> <span class="n" style="color: #333;">finder</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">R</span><span class="p">)</span></span>
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387
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396
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="go"> <span class="n" style="color: #333;">rR</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">regexp</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Compile</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Degenerate2Regexp</span><span class="p">())</span></span>
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388
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397
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<li id="b0f905ee92b1b9b32f1253d44d040463bc4df7b0">
<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#b0f905ee92b1b9b32f1253d44d040463bc4df7b0"><strong>seqkit/cmd/bam_toolbox.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -457,7 +457,7 @@ func GetSamAlnDetails(r *sam.Record) *AlnDetails {</td>
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457
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<pre style="margin: 0;"> <span id="LC457" class="line" lang="go"><span class="p">}</span></span>
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458
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458
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<pre style="margin: 0;"> <span id="LC458" class="line" lang="go"></span>
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459
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<pre style="margin: 0;"> <span id="LC459" class="line" lang="go"><span class="k" style="font-weight: 600;">func</span> <span class="n" style="color: #333;">BamToolDump</span><span class="p">(</span><span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">BamToolParams</span><span class="p">)</span> <span class="p">{</span></span>
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460
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="go"> <span class="n" style="color: #333;">validFields</span> <span class="o" style="font-weight: 600;">:=</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">{</span><span class="s" style="color: #d14;">"Read"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Ref"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Pos"</span><span class="p">,</span> <span class="s" style="color: #d14;">"EndPos"</span><span class="p">,</span> <span class="s" style="color: #d14;">"MapQual"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Acc"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Match"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Mismatch"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Ins"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Del"</span><span class="p">,</span> <span class="s" style="color: #d14;">"AlnLen"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadLen"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RefLen"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RefAln"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RefCov"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadAln"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadCov"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Strand"</span><span class="p">,</span> <span class="s" style="color: #d14;">"MeanQual"</span><span class="p">,</span> <span class="s" style="color: #d14;">"LeftClip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RightClip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Flags"</span><span class="p">,</span> <span class="s" style="color: #d14;">"IsSec"</span><span class="p">,</span> <span class="s" style="color: #d14;">"IsSup"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadSeq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadAlnSeq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"LeftSoftClipSeq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RightSoftClip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"LeftHardClip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RightHardClip"</span><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="go"> <span class="n" style="color: #333;">validFields</span> <span class="o" style="font-weight: 600;">:=</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">{</span><span class="s" style="color: #d14;">"Read"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Ref"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Pos"</span><span class="p">,</span> <span class="s" style="color: #d14;">"EndPos"</span><span class="p">,</span> <span class="s" style="color: #d14;">"MapQual"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Acc"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Match"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Mismatch"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Ins"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Del"</span><span class="p">,</span> <span class="s" style="color: #d14;">"AlnLen"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadLen"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RefLen"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RefAln"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RefCov"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadAln"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadCov"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Strand"</span><span class="p">,</span> <span class="s" style="color: #d14;">"MeanQual"</span><span class="p">,</span> <span class="s" style="color: #d14;">"LeftClip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RightClip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"Flags"</span><span class="p">,</span> <span class="s" style="color: #d14;">"IsSec"</span><span class="p">,</span> <span class="s" style="color: #d14;">"IsSup"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadSeq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"ReadAlnSeq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"LeftSoftClipSeq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RightSoftClip<span class="idiff left">Seq"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff right">"RightSoftClip</span>"</span><span class="p">,</span> <span class="s" style="color: #d14;">"LeftHardClip"</span><span class="p">,</span> <span class="s" style="color: #d14;">"RightHardClip"</span><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC461" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC462" class="line" lang="go"> <span class="n" style="color: #333;">tsvFh</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Stderr</span></span>
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<pre style="margin: 0;"> <span id="LC463" class="line" lang="go"> <span class="n" style="color: #333;">tsvFile</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Yaml</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Get</span><span class="p">(</span><span class="s" style="color: #d14;">"Tsv"</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">String</span><span class="p">()</span></span>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#a02b528e8138ab6ad3eae788206eb69181c130ba"><strong>seqkit/cmd/grep.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -46,17 +46,26 @@ var grepCmd = &cobra.Command{</td>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="go"> <span class="n" style="color: #333;">Long</span><span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Sprintf</span><span class="p">(</span><span class="s" style="color: #d14;">`search sequences by ID/name/sequence/sequence motifs, mismatch allowed</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="go"><span class="s" style="color: #d14;">Attentions:</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="go"><span class="s" style="color: #d14;"> 0. By default, we match sequence ID with patterns, use "-n/--by-name"</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="go"><span class="s" style="color: #d14;"> for matching full name instead of just ID.</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="go"><span class="s" style="color: #d14;"> 1. Unlike POSIX/GNU grep, we compare the pattern to the whole target</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="go"><span class="s" style="color: #d14;"> (ID/full header) by default. Please switch "-r/--use-regexp" on</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="go"><span class="s" style="color: #d14;"> for partly matching.</span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="go"><span class="s" style="color: #d14;"> 2. Wh<span class="idiff left right">ile when searching by sequences, only positive strand is searched,</span></span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="go"><span class="s" style="color: #d14;"> and <span class="idiff left right">it's partly matching. </span></span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="go"><span class="s" style="color: #d14;"> 2. Wh<span class="idiff left right">en searching by sequences, it's partly matching, and both positive</span></span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="go"><span class="s" style="color: #d14;"> and <span class="idiff left right">negative strands are searched.</span></span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="go"><span class="s" style="color: #d14;"> Mismatch is allowed using flag "-m/--max-mismatch",</span></span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="go"><span class="s" style="color: #d14;"> but it's not fast enough for large genome like human genome.</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="go"><span class="s" style="color: #d14;"> Though, it's fast enough for microbial genomes.</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="go"><span class="s" style="color: #d14;"> 3. The order of sequences in result is consistent with that in original</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="go"><span class="s" style="color: #d14;"> 3. Degenerate bases/residues like "RYMM.." are also supported by flag -d.</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="go"><span class="s" style="color: #d14;"> But do not use degenerate bases/residues in regular expression, you need</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="go"><span class="s" style="color: #d14;"> convert them to regular expression, e.g., change "N" or "X" to ".".</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="go"><span class="s" style="color: #d14;"> 4. When providing search patterns (motifs) via flag '-p',</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="go"><span class="s" style="color: #d14;"> please use double quotation marks for patterns containing comma, </span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="go"><span class="s" style="color: #d14;"> e.g., -p '"A{2,}"' or -p "\"A{2,}\"". Because the command line argument</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="go"><span class="s" style="color: #d14;"> parser accepts comma-separated-values (CSV) for multiple values (motifs).</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="go"><span class="s" style="color: #d14;"> Patterns in file do not follow this rule.</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="go"><span class="s" style="color: #d14;"> 5. The order of sequences in result is consistent with that in original</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="go"><span class="s" style="color: #d14;"> file, not the order of the query patterns. </span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="go"><span class="s" style="color: #d14;"> But for FASTA file, you can use:</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="go"><span class="s" style="color: #d14;"> seqkit faidx seqs.fasta --infile-list IDs.txt</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,6 +97,7 @@ Examples:</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="go"> <span class="n" style="color: #333;">deleteMatched</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"delete-matched"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="go"> <span class="n" style="color: #333;">invertMatch</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"invert-match"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="go"> <span class="n" style="color: #333;">bySeq</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"by-seq"</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="go"> <span class="n" style="color: #333;">onlyPositiveStrand</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"only-positive-strand"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="go"> <span class="n" style="color: #333;">mismatches</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagNonNegativeInt</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"max-mismatch"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="go"> <span class="n" style="color: #333;">byName</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"by-name"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="go"> <span class="n" style="color: #333;">ignoreCase</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"ignore-case"</span><span class="p">)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -256,6 +266,7 @@ Examples:</td>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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267
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="go"> <span class="k" style="font-weight: 600;">defer</span> <span class="n" style="color: #333;">outfh</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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258
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268
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<pre style="margin: 0;"> <span id="LC268" class="line" lang="go"></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">sequence</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span></span>
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259
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">target</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span></span>
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260
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">ok</span><span class="p">,</span> <span class="n" style="color: #333;">hit</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span></span>
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261
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272
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<pre style="margin: 0;"> <span id="LC272" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">record</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">fastx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Record</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -264,6 +275,8 @@ Examples:</td>
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264
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275
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">locs</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">int</span></span>
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265
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">re</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">regexp</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Regexp</span></span>
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<pre style="margin: 0;"> <span id="LC277" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">p</span> <span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="go"> <span class="n" style="color: #333;">strands</span> <span class="o" style="font-weight: 600;">:=</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">{</span><span class="sc" style="color: #d14;">'+'</span><span class="p">,</span> <span class="sc" style="color: #d14;">'-'</span><span class="p">}</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">strand</span> <span class="kt" style="color: #458; font-weight: 600;">byte</span></span>
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267
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">file</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">files</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="go"> <span class="n" style="color: #333;">fastxReader</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fastx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NewReader</span><span class="p">(</span><span class="n" style="color: #333;">alphabet</span><span class="p">,</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">idRegexp</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC282" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -285,76 +298,101 @@ Examples:</td>
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<pre style="margin: 0;"> <span id="LC298" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">byName</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Name</span></span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bySeq</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">limitRegion</span> <span class="p">{</span></span>
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289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">SubSeq</span><span class="p">(</span><span class="n" style="color: #333;">start</span><span class="p">,</span> <span class="n" style="color: #333;">end</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span></span>
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290
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">circular</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// concat two copies of sequence, and do not change orginal sequence</span></span>
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span><span class="o" style="font-weight: 600;">*</span><span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="go"> <span class="nb" style="color: #0086b3;">copy</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="o" style="font-weight: 600;">:</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)],</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="go"> <span class="nb" style="color: #0086b3;">copy</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">[</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span><span class="o" style="font-weight: 600;">:</span><span class="p">],</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC296" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span></span>
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ID</span></span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC306" class="line" lang="go"> <span class="n" style="color: #333;">hit</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">false</span></span>
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307
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="go"></span>
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">degenerate</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">useRegexp</span> <span class="p">{</span></span>
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305
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">p</span><span class="p">,</span> <span class="n" style="color: #333;">re</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">patterns</span> <span class="p">{</span></span>
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306
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Match</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="go"> <span class="n" style="color: #333;">hit</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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308
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">deleteMatched</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">invertMatch</span> <span class="p">{</span></span>
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309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="go"> <span class="nb" style="color: #0086b3;">delete</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">,</span> <span class="n" style="color: #333;">p</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">strand</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">strands</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">hit</span> <span class="p">{</span></span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="go"> <span class="p">}</span></span>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="go"></span>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strand</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'-'</span> <span class="p">{</span></span>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bySeq</span> <span class="p">{</span></span>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">onlyPositiveStrand</span> <span class="p">{</span></span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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317
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="go"> <span class="p">}</span></span>
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318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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319
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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320
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="go"> <span class="p">}</span></span>
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313
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321
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="go"> <span class="p">}</span></span>
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314
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<pre style="margin: 0;">-<span id="LC314" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bySeq</span> <span class="p">{</span></span>
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315
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ignoreCase</span> <span class="p">{</span></span>
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316
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<pre style="margin: 0;">-<span id="LC316" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bytes</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ToLower</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">)</span></span>
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322
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="go"></span>
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323
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bySeq</span> <span class="p">{</span></span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="go"> <span class="n" style="color: #333;">sequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span></span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">strand</span> <span class="o" style="font-weight: 600;">==</span> <span class="sc" style="color: #d14;">'-'</span> <span class="p">{</span></span>
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326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="go"> <span class="n" style="color: #333;">sequence</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">RevCom</span><span class="p">()</span></span>
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327
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="go"> <span class="p">}</span></span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">limitRegion</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">SubSeq</span><span class="p">(</span><span class="n" style="color: #333;">start</span><span class="p">,</span> <span class="n" style="color: #333;">end</span><span class="p">)</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span></span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">circular</span> <span class="p">{</span></span>
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331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// concat two copies of sequence, and do not change orginal sequence</span></span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span><span class="o" style="font-weight: 600;">*</span><span class="m" style="color: #099;">2</span><span class="p">)</span></span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="go"> <span class="nb" style="color: #0086b3;">copy</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">[</span><span class="m" style="color: #099;">0</span><span class="o" style="font-weight: 600;">:</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)],</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span></span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="go"> <span class="nb" style="color: #0086b3;">copy</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">[</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span><span class="o" style="font-weight: 600;">:</span><span class="p">],</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sequence</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span></span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC338" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC318" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">mismatches</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC319" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">patterns</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC320" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bytes</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Contains</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">,</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">))</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">degenerate</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">useRegexp</span> <span class="p">{</span></span>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">p</span><span class="p">,</span> <span class="n" style="color: #333;">re</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">patterns</span> <span class="p">{</span></span>
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342
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">re</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Match</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC343" class="line" lang="go"> <span class="n" style="color: #333;">hit</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<pre style="margin: 0;"> <span id="LC344" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">deleteMatched</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">invertMatch</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC323" class="line" lang="go"> <span class="nb" style="color: #0086b3;">delete</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left right">k</span></span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="go"> <span class="nb" style="color: #0086b3;">delete</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">,</span> <span class="n" style="color: #333;"><span class="idiff left right">p</span></span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;"> <span id="LC348" class="line" lang="go"> <span class="p">}</span></span>
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349
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="go"> <span class="p">}</span></span>
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328
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<pre style="margin: 0;">-<span id="LC328" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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329
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<pre style="margin: 0;">-<span id="LC329" class="line" lang="go"> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sfmi</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Transform</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">)</span></span>
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330
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<pre style="margin: 0;">-<span id="LC330" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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331
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">"fail to build FMIndex for sequence: %s"</span><span class="p">,</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Name</span><span class="p">))</span></span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bySeq</span> <span class="p">{</span></span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">ignoreCase</span> <span class="p">{</span></span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="go"> <span class="n" style="color: #333;">target</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bytes</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ToLower</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">)</span></span>
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332
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<pre style="margin: 0;"> <span id="LC353" class="line" lang="go"> <span class="p">}</span></span>
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333
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">patterns</span> <span class="p">{</span></span>
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334
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="go"> <span class="n" style="color: #333;">locs</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sfmi</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Locate</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">),</span> <span class="n" style="color: #333;">mismatches</span><span class="p">)</span></span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">mismatches</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">patterns</span> <span class="p">{</span></span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bytes</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Contains</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">,</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">))</span> <span class="p">{</span></span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="go"> <span class="n" style="color: #333;">hit</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">deleteMatched</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">invertMatch</span> <span class="p">{</span></span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="go"> <span class="nb" style="color: #0086b3;">delete</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="go"> <span class="p">}</span></span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="go"> <span class="p">}</span></span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="go"> <span class="n" style="color: #333;">_</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sfmi</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Transform</span><span class="p">(</span><span class="n" style="color: #333;">target</span><span class="p">)</span></span>
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335
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366
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<pre style="margin: 0;"> <span id="LC366" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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336
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<pre style="margin: 0;">-<span id="LC336" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">"fail to <span class="idiff left">search pattern '%s' on seq '%s': %s"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">record</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">Name</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">err</span></span><span class="p">))</span></span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">"fail to <span class="idiff left">build FMIndex for sequence: %s"</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">record</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">Name</span></span><span class="p">))</span></span>
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337
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<pre style="margin: 0;"> <span id="LC368" class="line" lang="go"> <span class="p">}</span></span>
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338
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">locs</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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339
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<pre style="margin: 0;">-<span id="LC339" class="line" lang="go"> <span class="n" style="color: #333;">hit</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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340
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<pre style="margin: 0;">-<span id="LC340" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">deleteMatched</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">invertMatch</span> <span class="p">{</span></span>
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341
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<pre style="margin: 0;">-<span id="LC341" class="line" lang="go"> <span class="nb" style="color: #0086b3;">delete</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">)</span></span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">k</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">patterns</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="go"> <span class="n" style="color: #333;">locs</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sfmi</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Locate</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">(</span><span class="n" style="color: #333;">k</span><span class="p">),</span> <span class="n" style="color: #333;">mismatches</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">!=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">"fail to search pattern '%s' on seq '%s': %s"</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">,</span> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Name</span><span class="p">,</span> <span class="n" style="color: #333;">err</span><span class="p">))</span></span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">locs</span><span class="p">)</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="go"> <span class="n" style="color: #333;">hit</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">deleteMatched</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">invertMatch</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="go"> <span class="nb" style="color: #0086b3;">delete</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;"> <span id="LC380" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC343" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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<pre style="margin: 0;"> <span id="LC381" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC346" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC347" class="line" lang="go"> <span class="p"><span class="idiff left">}</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">else</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="go"> <span class="n" style="color: #333;"><span class="idiff left">k</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">string</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">target</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">-<span id="LC349" class="line" lang="go"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ignoreCase</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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<pre style="margin: 0;">-<span id="LC350" class="line" lang="go"> <span class="n" style="color: #333;"><span class="idiff left">k</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">strings</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">ToLower</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">-<span id="LC351" class="line" lang="go"> <span class="p"><span class="idiff left right">}</span></span></span>
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="go"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ok</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">patterns</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="p"><span class="idiff">];</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ok</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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<pre style="margin: 0;">-<span id="LC353" class="line" lang="go"> <span class="n" style="color: #333;"><span class="idiff left">hit</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="no" style="color: #008080;"><span class="idiff right">true</span></span></span>
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<pre style="margin: 0;">-<span id="LC354" class="line" lang="go"> <span class="k" style="font-weight: 600;"><span class="idiff left">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">deleteMatched</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">!</span></span><span class="n" style="color: #333;"><span class="idiff">invertMatch</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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<pre style="margin: 0;">-<span id="LC355" class="line" lang="go"> <span class="nb" style="color: #0086b3;"><span class="idiff left">delete</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">patterns</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="p"><span class="idiff right">)</span></span></span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="go"> <span class="p">}</span><span class="idiff left"> </span><span class="k" style="font-weight: 600;"><span class="idiff">else</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="go"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">string</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">target</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="go"> <span class="idiff left"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ignoreCase</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="go"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">strings</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">ToLower</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="p"><span class="idiff right">)</span></span></span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="go"> <span class="p"><span class="idiff left right">}</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="388" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="go"> <span class="idiff left"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ok</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">patterns</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="p"><span class="idiff">];</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">ok</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="go"> <span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">hit</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="no" style="color: #008080;"><span class="idiff right">true</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="go"> <span class="idiff left"> </span><span class="k" style="font-weight: 600;"><span class="idiff">if</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">deleteMatched</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">!</span></span><span class="n" style="color: #333;"><span class="idiff">invertMatch</span></span><span class="idiff"> </span><span class="p"><span class="idiff right">{</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="go"> <span class="idiff left"> </span><span class="nb" style="color: #0086b3;"><span class="idiff">delete</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">patterns</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">k</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="go"> <span class="p"><span class="idiff left right">}</span></span></span>
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356
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393
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="go"> <span class="p">}</span></span>
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357
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394
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="go"> <span class="p">}</span></span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="go"></span>
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358
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396
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="go"> <span class="p">}</span></span>
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359
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397
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="go"></span>
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360
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398
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">invertMatch</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -384,7 +422,8 @@ func init() {</td>
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384
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<td class="diff-line-num new_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
422
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"delete-matched"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"delete a pattern right after being matched, this keeps the firstly matched data and speedups when using regular expressions"</span><span class="p">)</span></span>
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385
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<td class="diff-line-num new_line" data-linenumber="423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
423
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<pre style="margin: 0;"> <span id="LC423" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"invert-match"</span><span class="p">,</span> <span class="s" style="color: #d14;">"v"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"invert the sense of matching, to select non-matching records"</span><span class="p">)</span></span>
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386
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<td class="diff-line-num new_line" data-linenumber="424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
424
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<pre style="margin: 0;"> <span id="LC424" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"by-name"</span><span class="p">,</span> <span class="s" style="color: #d14;">"n"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"match by full name instead of just ID"</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="387" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
387
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<td class="diff-line-num new_line old" data-linenumber="425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"by-seq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"s"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"search subseq on seq, only positive strand is searched, and mismatch allowed using flag -m/--max-mismatch"</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"by-seq"</span><span class="p">,</span> <span class="s" style="color: #d14;">"s"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"search subseq on seq, both positive and negative strand are searched, and mismatch allowed using flag -m/--max-mismatch"</span><span class="p">)</span></span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"only-positive-strand"</span><span class="p">,</span> <span class="s" style="color: #d14;">"P"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"only search on positive strand"</span><span class="p">)</span></span>
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388
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427
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<pre style="margin: 0;"> <span id="LC427" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IntP</span><span class="p">(</span><span class="s" style="color: #d14;">"max-mismatch"</span><span class="p">,</span> <span class="s" style="color: #d14;">"m"</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="s" style="color: #d14;">"max mismatch when matching by seq. For large genomes like human genome, using mapping/alignment tools would be faster"</span><span class="p">)</span></span>
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389
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428
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<pre style="margin: 0;"> <span id="LC428" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"ignore-case"</span><span class="p">,</span> <span class="s" style="color: #d14;">"i"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"ignore case"</span><span class="p">)</span></span>
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390
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429
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<pre style="margin: 0;"> <span id="LC429" class="line" lang="go"> <span class="n" style="color: #333;">grepCmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"degenerate"</span><span class="p">,</span> <span class="s" style="color: #d14;">"d"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"pattern/motif contains degenerate base"</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#da9f919e44db345f43e899023ccde1e429864c15"><strong>seqkit/cmd/locate.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,20 +41,23 @@ var locateCmd = &cobra.Command{</td>
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="go"> <span class="n" style="color: #333;">Short</span><span class="o" style="font-weight: 600;">:</span> <span class="s" style="color: #d14;">"locate subsequences/motifs, mismatch allowed"</span><span class="p">,</span></span>
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="go"> <span class="n" style="color: #333;">Long</span><span class="o" style="font-weight: 600;">:</span> <span class="s" style="color: #d14;">`locate subsequences/motifs, mismatch allowed</span></span>
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="go"></span>
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44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="go"><span class="s" style="color: #d14;">Motifs could be EITHER plain sequence containing "ACTGN" OR regular</span></span>
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45
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="go"><span class="s" style="color: #d14;">expression like "A[TU]G(?:.{3})+?[TU](?:AG|AA|GA)" for ORFs.</span></span>
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46
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="go"><span class="s" style="color: #d14;">Degenerate bases like "RYMM.." are also supported by flag -d.</span></span>
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47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="go"></span>
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48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="go"><span class="s" style="color: #d14;">By default, motifs are treated as regular expression.</span></span>
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49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="go"><span class="s" style="color: #d14;">When flag -d given, regular expression may be wrong.</span></span>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="go"><span class="s" style="color: #d14;">For example: "\w" will be wrongly converted to "\[AT]".</span></span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="go"></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="go"><span class="s" style="color: #d14;">Mismatch is allowed using flag "-m/--max-mismatch",</span></span>
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53
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="go"><span class="s" style="color: #d14;">but it's not fast enough for large genome like human genome.</span></span>
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54
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="go"><span class="s" style="color: #d14;">Though, it's fast enough for microbial genomes.</span></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="go"></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="go"><span class="s" style="color: #d14;">When using flag --circular, end position of matched subsequence that </span></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="go"><span class="s" style="color: #d14;">crossing genome sequence end would be greater than sequence length.</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="go"><span class="s" style="color: #d14;">Attentions:</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="go"><span class="s" style="color: #d14;"> 1. Motifs could be EITHER plain sequence containing "ACTGN" OR regular</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="go"><span class="s" style="color: #d14;"> expression like "A[TU]G(?:.{3})+?[TU](?:AG|AA|GA)" for ORFs. </span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="go"><span class="s" style="color: #d14;"> 2. Degenerate bases/residues like "RYMM.." are also supported by flag -d.</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="go"><span class="s" style="color: #d14;"> But do not use degenerate bases/residues in regular expression, you need</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="go"><span class="s" style="color: #d14;"> convert them to regular expression, e.g., change "N" or "X" to ".".</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="go"><span class="s" style="color: #d14;"> 3. When providing search patterns (motifs) via flag '-p',</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="go"><span class="s" style="color: #d14;"> please use double quotation marks for patterns containing comma, </span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="go"><span class="s" style="color: #d14;"> e.g., -p '"A{2,}"' or -p "\"A{2,}\"". Because the command line argument</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="go"><span class="s" style="color: #d14;"> parser accepts comma-separated-values (CSV) for multiple values (motifs).</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="go"><span class="s" style="color: #d14;"> Patterns in file do not follow this rule. </span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="go"><span class="s" style="color: #d14;"> 4. Mismatch is allowed using flag "-m/--max-mismatch",</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="go"><span class="s" style="color: #d14;"> but it's not fast enough for large genome like human genome.</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="go"><span class="s" style="color: #d14;"> Though, it's fast enough for microbial genomes.</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="go"><span class="s" style="color: #d14;"> 5. When using flag --circular, end position of matched subsequence that </span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="go"><span class="s" style="color: #d14;"> crossing genome sequence end would be greater than sequence length.</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="go"><span class="s" style="color: #d14;">`</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="go"> <span class="n" style="color: #333;">Run</span><span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">cobra</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Command</span><span class="p">,</span> <span class="n" style="color: #333;">args</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -89,6 +92,10 @@ crossing genome sequence end would be greater than sequence length.</td>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="go"> <span class="n" style="color: #333;">hideMatched</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"hide-matched"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="go"> <span class="n" style="color: #333;">circular</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"circular"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Alphabet</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Protein</span> <span class="p">{</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="go"> <span class="n" style="color: #333;">onlyPositiveStrand</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="go"> <span class="p">}</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="go"></span>
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92
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99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">pattern</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">patternFile</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">""</span> <span class="p">{</span></span>
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93
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">"one of flags -p (--pattern) and -f (--pattern-file) needed"</span><span class="p">))</span></span>
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94
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -209,6 +216,7 @@ crossing genome sequence end would be greater than sequence length.</td>
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209
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216
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="go"> <span class="p">}</span></span>
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210
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="go"> <span class="n" style="color: #333;">re</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">regexp</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Compile</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="p">)</span></span>
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211
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="go"> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Println</span><span class="p">(</span><span class="n" style="color: #333;">s</span><span class="p">,</span> <span class="n" style="color: #333;">re</span><span class="p">)</span></span>
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212
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="go"> <span class="n" style="color: #333;">regexps</span><span class="p">[</span><span class="n" style="color: #333;">p</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">re</span></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bytes</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Index</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">[</span><span class="n" style="color: #333;">p</span><span class="p">],</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">(</span><span class="s" style="color: #d14;">"."</span><span class="p">))</span> <span class="o" style="font-weight: 600;">>=</span> <span class="m" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">||</span></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="go"> <span class="o" style="font-weight: 600;">!</span><span class="p">(</span><span class="n" style="color: #333;">seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">DNAredundant</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IsValid</span><span class="p">(</span><span class="n" style="color: #333;">patterns</span><span class="p">[</span><span class="n" style="color: #333;">p</span><span class="p">])</span> <span class="o" style="font-weight: 600;">==</span> <span class="no" style="color: #008080;">nil</span> <span class="o" style="font-weight: 600;">||</span></span>
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<li id="2672fa4e0f4cd13ef74ee291c22cde12985ef65b">
<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#2672fa4e0f4cd13ef74ee291c22cde12985ef65b"><strong>seqkit/cmd/seq.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,6 +42,10 @@ var seqCmd = &cobra.Command{</td>
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="go"> <span class="n" style="color: #333;">Short</span><span class="o" style="font-weight: 600;">:</span> <span class="s" style="color: #d14;">"transform sequences (revserse, complement, extract ID...)"</span><span class="p">,</span></span>
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="go"> <span class="n" style="color: #333;">Long</span><span class="o" style="font-weight: 600;">:</span> <span class="s" style="color: #d14;">`transform sequences (revserse, complement, extract ID...)</span></span>
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44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="go"></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="go"><span class="s" style="color: #d14;">Attentions:</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="go"><span class="s" style="color: #d14;"> 1. This command outputs plain text even when out file ends with ".gz".</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="go"><span class="s" style="color: #d14;">`</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="go"> <span class="n" style="color: #333;">Run</span><span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">func</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">cobra</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Command</span><span class="p">,</span> <span class="n" style="color: #333;">args</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="go"> <span class="n" style="color: #333;">config</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getConfigs</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#1d415668e438829ee466a5e6b51f9c42ca064b0c"><strong>seqkit/cmd/shuffle.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -216,7 +216,6 @@ Secondly, seqkit shuffles sequence IDs and extract sequences by FASTA index.</td>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="go"> <span class="n" style="color: #333;">sequence</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">subseqByFaixNotCleaned</span><span class="p">(</span><span class="n" style="color: #333;">faidx</span><span class="p">,</span> <span class="n" style="color: #333;">chr</span><span class="p">,</span> <span class="n" style="color: #333;">r</span><span class="p">,</span> <span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="o" style="font-weight: 600;">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span></span>
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217
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="go"> <span class="n" style="color: #333;">outfh</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Write</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">byte</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Sprintf</span><span class="p">(</span><span class="s" style="color: #d14;">">%s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">chr</span><span class="p">)))</span></span>
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218
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="go"> <span class="n" style="color: #333;">outfh</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Write</span><span class="p">(</span><span class="n" style="color: #333;">sequence</span><span class="p">)</span></span>
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219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="go"> <span class="n" style="color: #333;">outfh</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">WriteString</span><span class="p">(</span><span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">isStdin</span><span class="p">(</span><span class="n" style="color: #333;">file</span><span class="p">)</span> <span class="o" style="font-weight: 600;">||</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">isPlainFile</span><span class="p">(</span><span class="n" style="color: #333;">file</span><span class="p">))</span> <span class="o" style="font-weight: 600;">&&</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">keepTemp</span> <span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#34b4c1c21d7f344c5a8a84e1a21a08c2f8760f04"><strong>seqkit/cmd/split2.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -90,9 +90,13 @@ according to the input files.</td>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="go"> <span class="n" style="color: #333;">force</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">getFlagBool</span><span class="p">(</span><span class="n" style="color: #333;">cmd</span><span class="p">,</span> <span class="s" style="color: #d14;">"force"</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">parts</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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93
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">`one of flags should be given: -s/-p. type "seqkit split2 -h" for help`</span><span class="p">))</span></span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">`one of flags should be given: -s/-p<span class="idiff left right">/-l</span>. type "seqkit split2 -h" for help`</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="go"></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="go"> <span class="n" style="color: #333;">bySize</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="go"> <span class="n" style="color: #333;">byParts</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">parts</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="go"> <span class="n" style="color: #333;">byLength</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="go"></span>
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96
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">parts</span> <span class="o" style="font-weight: 600;">>=</span> <span class="m" style="color: #099;">1000</span> <span class="p">{</span></span>
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97
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Warningf</span><span class="p">(</span><span class="s" style="color: #d14;">`value of -p/--parts > 1000 may cause error of "too many open files"`</span><span class="p">)</span></span>
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98
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102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -134,9 +138,9 @@ according to the input files.</td>
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134
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="go"></span>
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135
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">quiet</span> <span class="p">{</span></span>
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136
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"split seqs from %s"</span><span class="p">,</span> <span class="n" style="color: #333;">source</span><span class="p">)</span></span>
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137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left">size</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">{</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left right">bySize</span></span> <span class="p">{</span></span>
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138
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<td class="diff-line-num new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"split into %d seqs per file"</span><span class="p">,</span> <span class="n" style="color: #333;">size</span><span class="p">)</span></span>
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139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left">parts</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">{</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left right">byParts</span></span> <span class="p">{</span></span>
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140
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"split into %d parts"</span><span class="p">,</span> <span class="n" style="color: #333;">parts</span><span class="p">)</span></span>
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141
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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142
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"split by sequence length: %s"</span><span class="p">,</span> <span class="n" style="color: #333;">lengthS</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -192,23 +196,24 @@ according to the input files.</td>
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192
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">counts</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">int</span></span>
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193
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">outfiles</span> <span class="p">[]</span><span class="kt" style="color: #458; font-weight: 600;">string</span></span>
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194
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="go"></span>
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195
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">size</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// by size or by length</span></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">flag</span> <span class="kt" style="color: #458; font-weight: 600;">bool</span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="go"></span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">bySize</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">byLength</span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// by size or by length</span></span>
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196
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Writer</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">10</span><span class="p">)</span></span>
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197
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="go"> <span class="n" style="color: #333;">counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">10</span><span class="p">)</span></span>
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198
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="go"> <span class="n" style="color: #333;">outfiles</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="m" style="color: #099;">10</span><span class="p">)</span></span>
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199
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left">parts</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// by part</span></span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left right">byParts</span></span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// by part</span></span>
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200
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Writer</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">parts</span><span class="p">)</span></span>
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201
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="go"> <span class="n" style="color: #333;">counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">parts</span><span class="p">)</span></span>
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202
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="go"> <span class="n" style="color: #333;">outfiles</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">make</span><span class="p">([]</span><span class="kt" style="color: #458; font-weight: 600;">string</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">parts</span><span class="p">)</span></span>
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203
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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204
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">`one of flags should be given: -s/-p. type "seqkit split2 -h" for help`</span><span class="p">))</span></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Errorf</span><span class="p">(</span><span class="s" style="color: #d14;">`one of flags should be given: -s/-p<span class="idiff left right">/-l</span>. type "seqkit split2 -h" for help`</span><span class="p">))</span></span>
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205
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="go"> <span class="p">}</span></span>
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206
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="go"></span>
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207
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">outfh</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Writer</span></span>
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208
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<td class="diff-line-num new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="go"> <span class="n" style="color: #333;">fastxReader</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fastx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">NewReader</span><span class="p">(</span><span class="n" style="color: #333;">alphabet</span><span class="p">,</span> <span class="n" style="color: #333;">file</span><span class="p">,</span> <span class="n" style="color: #333;">idRegexp</span><span class="p">)</span></span>
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209
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="go"> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span> <span class="idiff left right"> </span><span class="c" style="color: #998; font-style: italic;">// nth part</span></span>
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211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="go"> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span><span class="idiff left"> </span><span class="c" style="color: #998; font-style: italic;"><span class="idiff right">// nth record</span></span></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="go"> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span> <span class="c" style="color: #998; font-style: italic;">// nth part</span></span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="go"> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">:=</span> <span class="m" style="color: #099;">0</span></span>
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212
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217
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">n</span> <span class="kt" style="color: #458; font-weight: 600;">int64</span> <span class="c" style="color: #998; font-style: italic;">// length sum</span></span>
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213
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218
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="p">{</span></span>
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214
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="go"> <span class="n" style="color: #333;">record</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fastxReader</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Read</span><span class="p">()</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -219,6 +224,7 @@ according to the input files.</td>
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219
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224
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="go"> <span class="k" style="font-weight: 600;">break</span></span>
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221
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">fastxReader</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IsFastq</span> <span class="p">{</span></span>
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223
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="go"> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">LineWidth</span> <span class="o" style="font-weight: 600;">=</span> <span class="m" style="color: #099;">0</span></span>
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224
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="go"> <span class="n" style="color: #333;">fastx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ForcelyOutputFastq</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,7 +240,7 @@ according to the input files.</td>
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234
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="go"> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">+=</span> <span class="kt" style="color: #458; font-weight: 600;">int64</span><span class="p">(</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Seq</span><span class="p">))</span></span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="go"></span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left">size</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">{</span></span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left right">bySize</span></span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">size</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC246" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">quiet</span> <span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -254,25 +260,55 @@ according to the input files.</td>
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254
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260
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="go"></span>
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255
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="go"> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="m" style="color: #099;">0</span></span>
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256
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262
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="go"> <span class="p">}</span></span>
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257
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">length</span> <span class="o" style="font-weight: 600;">></span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">byLength</span> <span class="p">{</span></span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="go"> <span class="n" style="color: #333;">flag</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">false</span></span>
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258
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265
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">>=</span> <span class="n" style="color: #333;">length</span> <span class="p">{</span></span>
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259
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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260
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<pre style="margin: 0;">-<span id="LC260" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">quiet</span> <span class="p">{</span></span>
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261
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"write %d sequences to file: %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">outfiles</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">])</span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">)</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// order is different</span></span>
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<td class="diff-line-num new new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">outfh2</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Writer</span></span>
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<td class="diff-line-num new new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="go"> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">filepath</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Join</span><span class="p">(</span><span class="n" style="color: #333;">outdir</span><span class="p">,</span> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Sprintf</span><span class="p">(</span><span class="s" style="color: #d14;">"%s.part_%03d%s"</span><span class="p">,</span> <span class="n" style="color: #333;">filepath</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Base</span><span class="p">(</span><span class="n" style="color: #333;">fileName</span><span class="p">),</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">fileExt</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="go"> <span class="n" style="color: #333;">outfh2</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Wopen</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="go"></span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">,</span> <span class="n" style="color: #333;">outfh2</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="go"> <span class="n" style="color: #333;">counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">counts</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="go"> <span class="n" style="color: #333;">outfiles</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">outfiles</span><span class="p">,</span> <span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="go"> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FormatToWriter</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">LineWidth</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="go"> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">quiet</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"write %d sequences to file: %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">outfiles</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">])</span></span>
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<td class="diff-line-num new new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num new old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">nil</span></span>
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<td class="diff-line-num new new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="go"> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="go"> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="m" style="color: #099;">0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="go"> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FormatToWriter</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">LineWidth</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="go"> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num new new_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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<td class="diff-line-num new old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">quiet</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"write %d sequences to file: %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">outfiles</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">])</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="go"> <span class="p">}</span></span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">nil</span></span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="go"> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="298" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">outfh2</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Writer</span></span>
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<td class="diff-line-num new new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="go"> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">filepath</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Join</span><span class="p">(</span><span class="n" style="color: #333;">outdir</span><span class="p">,</span> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Sprintf</span><span class="p">(</span><span class="s" style="color: #d14;">"%s.part_%03d%s"</span><span class="p">,</span> <span class="n" style="color: #333;">filepath</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Base</span><span class="p">(</span><span class="n" style="color: #333;">fileName</span><span class="p">),</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">fileExt</span><span class="p">))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="go"> <span class="n" style="color: #333;">outfh2</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Wopen</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">,</span> <span class="n" style="color: #333;">outfh2</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="go"> <span class="n" style="color: #333;">counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">counts</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="go"> <span class="n" style="color: #333;">outfiles</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">outfiles</span><span class="p">,</span> <span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="go"></span>
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<td class="diff-line-num new new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="go"> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="m" style="color: #099;">0</span></span>
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262
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<td class="diff-line-num new_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
308
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="go"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
263
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<td class="diff-line-num new_line old" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">nil</span></span>
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264
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<td class="diff-line-num new_line old" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="go"></span>
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265
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="go"> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span></span>
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<td class="diff-line-num old old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
266
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="go"> <span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">outfh2</span> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Writer</span></span>
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<td class="diff-line-num old old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
267
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<td class="diff-line-num new_line old" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="go"> <span class="n" style="color: #333;">outfile</span> <span class="o" style="font-weight: 600;">:=</span> <span class="n" style="color: #333;">filepath</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Join</span><span class="p">(</span><span class="n" style="color: #333;">outdir</span><span class="p">,</span> <span class="n" style="color: #333;">fmt</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Sprintf</span><span class="p">(</span><span class="s" style="color: #d14;">"%s.part_%03d%s"</span><span class="p">,</span> <span class="n" style="color: #333;">filepath</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Base</span><span class="p">(</span><span class="n" style="color: #333;">fileName</span><span class="p">),</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">+</span><span class="m" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">fileExt</span><span class="p">))</span></span>
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<td class="diff-line-num old old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
268
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="go"> <span class="n" style="color: #333;">outfh2</span><span class="p">,</span> <span class="n" style="color: #333;">err</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">xopen</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Wopen</span><span class="p">(</span><span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
269
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="go"> <span class="n" style="color: #333;">checkError</span><span class="p">(</span><span class="n" style="color: #333;">err</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="go"></span>
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="go"> <span class="n" style="color: #333;">outfhs</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">,</span> <span class="n" style="color: #333;">outfh2</span><span class="p">)</span></span>
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272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="go"> <span class="n" style="color: #333;">counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">counts</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="go"> <span class="n" style="color: #333;">outfiles</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">outfiles</span><span class="p">,</span> <span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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274
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="go"></span>
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275
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="go"> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="m" style="color: #099;">0</span></span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="go"> <span class="n" style="color: #333;">flag</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">false</span></span>
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// write this record later</span></span>
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="go"> <span class="n" style="color: #333;">flag</span> <span class="o" style="font-weight: 600;">=</span> <span class="no" style="color: #008080;">true</span></span>
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="go"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="go"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -286,15 +322,20 @@ according to the input files.</td>
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="go"> <span class="n" style="color: #333;">counts</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">counts</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="go"> <span class="n" style="color: #333;">outfiles</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">append</span><span class="p">(</span><span class="n" style="color: #333;">outfiles</span><span class="p">,</span> <span class="n" style="color: #333;">outfile</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC324" class="line" lang="go"> <span class="p">}</span></span>
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289
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="go"> <span class="n" style="color: #333;">outfh</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span></span>
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290
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<pre style="margin: 0;"> <span id="LC325" class="line" lang="go"></span>
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291
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="go"> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FormatToWriter</span><span class="p">(</span><span class="n" style="color: #333;">outfh</span><span class="p">,</span> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">LineWidth</span><span class="p">)</span></span>
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292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="go"></span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="go"> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">++</span></span>
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">byLength</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">flag</span> <span class="p">{</span></span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="go"> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FormatToWriter</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">LineWidth</span><span class="p">)</span></span>
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329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="go"> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">++</span></span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="go"> <span class="p">}</span></span>
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331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="go"> <span class="n" style="color: #333;">record</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FormatToWriter</span><span class="p">(</span><span class="n" style="color: #333;">outfhs</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">config</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">LineWidth</span><span class="p">)</span></span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="go"> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span><span class="o" style="font-weight: 600;">++</span></span>
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334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="go"> <span class="p">}</span></span>
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294
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335
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<pre style="margin: 0;"> <span id="LC335" class="line" lang="go"></span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left">size</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">{</span></span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left right">bySize</span></span> <span class="p">{</span></span>
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296
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337
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<pre style="margin: 0;"> <span id="LC337" class="line" lang="go"> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span> <span class="c" style="color: #998; font-style: italic;">// increase size</span></span>
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297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left">parts</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">></span></span><span class="idiff"> </span><span class="m" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">{</span></span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;"><span class="idiff left right">byParts</span></span> <span class="p">{</span></span>
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298
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339
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="go"> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span></span>
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299
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340
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">parts</span> <span class="p">{</span> <span class="c" style="color: #998; font-style: italic;">// reset index</span></span>
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300
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="go"> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="m" style="color: #099;">0</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="345" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -304,15 +345,20 @@ according to the input files.</td>
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345
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="go"> <span class="p">}</span></span>
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346
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="go"> <span class="p">}</span></span>
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347
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="go"></span>
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307
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// for by-size<span class="idiff left right">/length</span>: only log last part,</span></span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// for by-size: only log last part,</span></span>
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308
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349
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="go"> <span class="c" style="color: #998; font-style: italic;">// for by-parts: log all parts.</span></span>
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309
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350
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<pre style="margin: 0;"> <span id="LC350" class="line" lang="go"> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span><span class="p">,</span> <span class="n" style="color: #333;">outfh</span> <span class="o" style="font-weight: 600;">:=</span> <span class="k" style="font-weight: 600;">range</span> <span class="n" style="color: #333;">outfhs</span> <span class="p">{</span></span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">outfh</span> <span class="o" style="font-weight: 600;"><span class="idiff left right">!</span>=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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311
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<td class="diff-line-num new_line old" data-linenumber="351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC311" class="line" lang="go"> <span class="n" style="color: #333;"><span class="idiff left">outfh</span></span><span class="o" style="font-weight: 600;"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">Close</span></span><span class="p"><span class="idiff right">()</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">outfh</span> <span class="o" style="font-weight: 600;"><span class="idiff left right">=</span>=</span> <span class="no" style="color: #008080;">nil</span> <span class="p">{</span></span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="go"> <span class="k" style="font-weight: 600;"><span class="idiff left right">continue</span></span></span>
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312
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353
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<pre style="margin: 0;"> <span id="LC353" class="line" lang="go"> <span class="p">}</span></span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="go"> <span class="n" style="color: #333;">outfh</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">()</span></span>
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313
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355
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<pre style="margin: 0;"> <span id="LC355" class="line" lang="go"></span>
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314
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<td class="diff-line-num new_line" data-linenumber="356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
356
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<pre style="margin: 0;"> <span id="LC356" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">!</span><span class="n" style="color: #333;">quiet</span> <span class="p">{</span></span>
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315
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<pre style="margin: 0;">-<span id="LC315" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"write %d sequences to file: %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">outfiles</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">])</span></span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="go"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">==</span> <span class="m" style="color: #099;">0</span> <span class="p">{</span></span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="go"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Remove</span><span class="p">(</span><span class="n" style="color: #333;">outfiles</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">])</span></span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="go"> <span class="p">}</span> <span class="k" style="font-weight: 600;">else</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="360" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="go"> <span class="n" style="color: #333;">log</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Infof</span><span class="p">(</span><span class="s" style="color: #d14;">"write %d sequences to file: %s</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">,</span> <span class="n" style="color: #333;">counts</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">],</span> <span class="n" style="color: #333;">outfiles</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">])</span></span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="go"> <span class="p">}</span></span>
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316
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362
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<pre style="margin: 0;"> <span id="LC362" class="line" lang="go"> <span class="p">}</span></span>
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317
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363
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<pre style="margin: 0;"> <span id="LC363" class="line" lang="go"> <span class="p">}</span></span>
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318
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364
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<pre style="margin: 0;"> <span id="LC364" class="line" lang="go"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -330,7 +376,7 @@ func init() {</td>
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330
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376
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<pre style="margin: 0;"> <span id="LC376" class="line" lang="go"> <span class="n" style="color: #333;">split2Cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"read2"</span><span class="p">,</span> <span class="s" style="color: #d14;">"2"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"(gzipped) read2 file"</span><span class="p">)</span></span>
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331
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377
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<pre style="margin: 0;"> <span id="LC377" class="line" lang="go"> <span class="n" style="color: #333;">split2Cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IntP</span><span class="p">(</span><span class="s" style="color: #d14;">"by-size"</span><span class="p">,</span> <span class="s" style="color: #d14;">"s"</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="s" style="color: #d14;">"split sequences into multi parts with N sequences"</span><span class="p">)</span></span>
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332
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378
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<pre style="margin: 0;"> <span id="LC378" class="line" lang="go"> <span class="n" style="color: #333;">split2Cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">IntP</span><span class="p">(</span><span class="s" style="color: #d14;">"by-part"</span><span class="p">,</span> <span class="s" style="color: #d14;">"p"</span><span class="p">,</span> <span class="m" style="color: #099;">0</span><span class="p">,</span> <span class="s" style="color: #d14;">"split sequences into N parts"</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="333" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
333
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<td class="diff-line-num new_line old" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC333" class="line" lang="go"> <span class="n" style="color: #333;">split2Cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"by-length"</span><span class="p">,</span> <span class="s" style="color: #d14;">"l"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"split sequences into chunks of N bases, supports K/M/G suffix"</span><span class="p">)</span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="go"> <span class="n" style="color: #333;">split2Cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"by-length"</span><span class="p">,</span> <span class="s" style="color: #d14;">"l"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"split sequences into chunks of <span class="idiff left right">>=</span>N bases, supports K/M/G suffix"</span><span class="p">)</span></span>
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334
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380
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<pre style="margin: 0;"> <span id="LC380" class="line" lang="go"> <span class="n" style="color: #333;">split2Cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">StringP</span><span class="p">(</span><span class="s" style="color: #d14;">"out-dir"</span><span class="p">,</span> <span class="s" style="color: #d14;">"O"</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span> <span class="s" style="color: #d14;">"output directory (default value is $infile.split)"</span><span class="p">)</span></span>
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335
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381
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<pre style="margin: 0;"> <span id="LC381" class="line" lang="go"> <span class="n" style="color: #333;">split2Cmd</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Flags</span><span class="p">()</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoolP</span><span class="p">(</span><span class="s" style="color: #d14;">"force"</span><span class="p">,</span> <span class="s" style="color: #d14;">"f"</span><span class="p">,</span> <span class="no" style="color: #008080;">false</span><span class="p">,</span> <span class="s" style="color: #d14;">"overwrite output directory"</span><span class="p">)</span></span>
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336
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382
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="go"><span class="p">}</span></span></pre>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#9b440ae881620aea38a06351cb2ab92f966a94f0"><strong>seqkit/cmd/version.go</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,7 +29,7 @@ import (</td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="go"><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// VERSION of seqkit</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="go"><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.1<span class="idiff left right">4</span>.0"</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="go"><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">VERSION</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"0.1<span class="idiff left right">5</span>.0"</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="go"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="go"><span class="c" style="color: #998; font-style: italic;">// versionCmd represents the version command</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="go"><span class="k" style="font-weight: 600;">var</span> <span class="n" style="color: #333;">versionCmd</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cobra</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Command</span><span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#fa7d2483a5b8da094bcf09750b12a81c8498d79a"><strong>seqkit/packaging.sh</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/usr/bin/env sh</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">CGO_ENABLED</span><span class="o" style="font-weight: 600;">=</span>0 gox <span class="nt" style="color: #000080;">-os</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"windows darwin linux"</span> <span class="nt" style="color: #000080;">-arch</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"386 amd64"</span> <span class="nt" style="color: #000080;">-tags</span> netgo <span class="nt" style="color: #000080;">-ldflags</span> <span class="s1" style="color: #d14;">'-w -s'</span> <span class="nt" style="color: #000080;">-asmflags</span> <span class="s1" style="color: #d14;">'-trimpath'</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="nv" style="color: #008080;">CGO_ENABLED</span><span class="o" style="font-weight: 600;">=</span>0 gox <span class="nt" style="color: #000080;">-os</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"windows darwin linux"</span> <span class="nt" style="color: #000080;">-arch</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"386 amd64<span class="idiff left right"> arm64</span>"</span> <span class="nt" style="color: #000080;">-tags</span> netgo <span class="nt" style="color: #000080;">-ldflags</span> <span class="s1" style="color: #d14;">'-w -s'</span> <span class="nt" style="color: #000080;">-asmflags</span> <span class="s1" style="color: #d14;">'-trimpath'</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="nb" style="color: #0086b3;">dir</span><span class="o" style="font-weight: 600;">=</span>binaries</span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">mkdir</span> <span class="nt" style="color: #000080;">-p</span> <span class="nv" style="color: #008080;">$dir</span><span class="p">;</span></span>
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<a href="https://salsa.debian.org/med-team/seqkit/-/commit/8fdd687f430dbc8efa4d31b6edfb001a81db3a12#08f4007a2dcdd77b75167cfe678d33d187bd0572"><strong>tests/test.sh</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -605,7 +605,7 @@ fun(){</td>
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<pre style="margin: 0;"> <span id="LC605" class="line" lang="shell"> <span class="nv" style="color: #008080;">SCAT_PID</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$!</span></span>
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606
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606
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<pre style="margin: 0;"> <span id="LC606" class="line" lang="shell"> <span class="nv" style="color: #008080;">BAK</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$IFS</span></span>
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607
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607
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<pre style="margin: 0;"> <span id="LC607" class="line" lang="shell"> <span class="nv" style="color: #008080;">IFS</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">$'</span><span class="se" style="color: #d14;">\n</span><span class="s1" style="color: #d14;">'</span></span>
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608
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<pre style="margin: 0;">-<span id="LC608" class="line" lang="shell"> <span class="nv" style="color: #008080;">SIZE</span><span class="o" style="font-weight: 600;">=</span><span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="shell"> <span class="nv" style="color: #008080;">SIZE</span><span class="o" style="font-weight: 600;">=</span><span class="idiff left right">2</span></span>
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609
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609
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<pre style="margin: 0;"> <span id="LC609" class="line" lang="shell"> <span class="k" style="font-weight: 600;">for </span>i <span class="k" style="font-weight: 600;">in</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">seq </span>0 <span class="nv" style="color: #008080;">$SIZE</span><span class="sb" style="color: #d14;">`</span><span class="p">;</span></span>
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610
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610
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<pre style="margin: 0;"> <span id="LC610" class="line" lang="shell"> <span class="k" style="font-weight: 600;">do</span></span>
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611
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611
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<pre style="margin: 0;"> <span id="LC611" class="line" lang="shell"><span class="k" style="font-weight: 600;"> for </span>j <span class="k" style="font-weight: 600;">in</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">seq </span>0 <span class="nv" style="color: #008080;">$SIZE</span><span class="sb" style="color: #d14;">`</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -652,7 +652,7 @@ fun(){</td>
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652
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652
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<pre style="margin: 0;"> <span id="LC652" class="line" lang="shell"> <span class="nv" style="color: #008080;">SCAT_PID</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$!</span></span>
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653
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<pre style="margin: 0;"> <span id="LC653" class="line" lang="shell"> <span class="nv" style="color: #008080;">BAK</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$IFS</span></span>
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<pre style="margin: 0;"> <span id="LC654" class="line" lang="shell"> <span class="nv" style="color: #008080;">IFS</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">$'</span><span class="se" style="color: #d14;">\n</span><span class="s1" style="color: #d14;">'</span></span>
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<pre style="margin: 0;">-<span id="LC655" class="line" lang="shell"> <span class="nv" style="color: #008080;">SIZE</span><span class="o" style="font-weight: 600;">=</span><span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="shell"> <span class="nv" style="color: #008080;">SIZE</span><span class="o" style="font-weight: 600;">=</span><span class="idiff left right">2</span></span>
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656
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656
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<pre style="margin: 0;"> <span id="LC656" class="line" lang="shell"> <span class="k" style="font-weight: 600;">for </span>i <span class="k" style="font-weight: 600;">in</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">seq </span>0 <span class="nv" style="color: #008080;">$SIZE</span><span class="sb" style="color: #d14;">`</span><span class="p">;</span></span>
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657
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657
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<pre style="margin: 0;"> <span id="LC657" class="line" lang="shell"> <span class="k" style="font-weight: 600;">do</span></span>
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658
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658
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<pre style="margin: 0;"> <span id="LC658" class="line" lang="shell"><span class="k" style="font-weight: 600;"> for </span>j <span class="k" style="font-weight: 600;">in</span> <span class="sb" style="color: #d14;">`</span><span class="nb" style="color: #0086b3;">seq </span>0 <span class="nv" style="color: #008080;">$SIZE</span><span class="sb" style="color: #d14;">`</span><span class="p">;</span></span>
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