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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/2c08adc8310d07820de52e25099edcee3556498b">2c08adc8</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-01-18T18:56:13+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.26+dfsg</pre>
</li>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#cf5243a3058ebeab74574f8cd2c771cd63a43208">
res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
</a>
</li>
<li class="file-stats">
<a href="#c7933e171033f4eac9d83419583cca5474f9266c">
res/TemplateBatchFiles/libv3/tasks/estimators.bf
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<li class="file-stats">
<a href="#2a8dd324ded753b0b3c559ac3950a2881ccd7a93">
src/core/likefunc.cpp
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<h4>Changes:</h4>
<li id="cf5243a3058ebeab74574f8cd2c771cd63a43208">
<a href="https://salsa.debian.org/med-team/hyphy/-/commit/2c08adc8310d07820de52e25099edcee3556498b#cf5243a3058ebeab74574f8cd2c771cd63a43208"><strong>res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -367,11 +367,20 @@ if (relax.model_set == "All") { // run all the models</td>
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<pre style="margin: 0;"> <span id="LC367" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">weight_multipliers    = parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">helper</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">stick_breaking (utility</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">SwapKeysAndValues(utility</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">MatrixToDict(relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">distribution</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">"weights"</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;">))</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;">None);</span></span>
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<pre style="margin: 0;"> <span id="LC368" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">constrain_parameters   = parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">ConstrainMeanOfSet(relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">distribution</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">"rates"</span><span class="p">]</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;">relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">weight_multipliers</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;">1</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;">"relax");</span></span>
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<pre style="margin: 0;"> <span id="LC369" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        </span></span>
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        </span></span>
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">i = 0;</span></span>
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<pre style="margin: 0;"> <span id="LC372" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        for (key</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> value; in; relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">constrain_parameters</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">global</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;">){</span></span>
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<pre style="margin: 0;"> <span id="LC373" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            model</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">generic</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">AddGlobal (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">ge</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">bsrel_model</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> value</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> key);</span></span>
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<pre style="margin: 0;">-<span id="LC372" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">SetRange (value</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">range_almost_01);</span></span>
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">i </span><span class="nf" style="color: #900; font-weight: 600;">+</span><span class="c1" style="color: #998; font-style: italic;">= 1;</span></span>
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            if (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">i </span><span class="nb" style="color: #0086b3;"><</span><span class="c1" style="color: #998; font-style: italic;"> relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">rate_classes) {</span></span>
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">SetRange (value</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">range_almost_01);</span></span>
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            } else {</span></span>
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">SetRange (value</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">range_gte1);</span></span>
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            }</span></span>
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            </span></span>
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<pre style="margin: 0;"> <span id="LC381" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        }</span></span>
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        </span></span>
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        </span></span>
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">distribution</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">"rates"</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;"> = Transpose (utility</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">Values (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">constrain_parameters</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">global</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;">));</span></span>
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<pre style="margin: 0;"> <span id="LC385" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        </span></span>
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<pre style="margin: 0;"> <span id="LC386" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        for (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">i = 1; relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">i </span><span class="nb" style="color: #0086b3;"><</span><span class="c1" style="color: #998; font-style: italic;"> relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">rate_classes; relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">i </span><span class="nf" style="color: #900; font-weight: 600;">+</span><span class="c1" style="color: #998; font-style: italic;">= 1) {</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -397,7 +406,8 @@ if (relax.model_set == "All") { // run all the models</td>
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<pre style="margin: 0;"> <span id="LC406" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            math</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">Mean ( </span></span>
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                utility</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">Map (selection</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">io</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">extract_global_MLE_re (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">final_partitioned_mg_results</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "^" </span><span class="nf" style="color: #900; font-weight: 600;">+</span><span class="c1" style="color: #998; font-style: italic;"> terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">omega_ratio </span><span class="nf" style="color: #900; font-weight: 600;">+</span><span class="c1" style="color: #998; font-style: italic;"> "</span><span class="nf" style="color: #900; font-weight: 600;">.+</span><span class="c1" style="color: #998; font-style: italic;">")</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "_v_"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "_v_</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">fit</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">MLE</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;">"));</span></span>
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                </span></span>
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">init_grid_setup        (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">distribution);</span></span>
</pre>
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                </span></span>
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">init_grid_setup       (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">distribution);</span></span>
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_grid         = estimators</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">LHC (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_ranges</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;">relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_grid</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">N);</span></span>
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_grid = utility</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">Map (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_grid</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "_v_"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> </span></span>
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<pre style="margin: 0;"> <span id="LC413" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                'relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">_renormalize (_v_</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">distribution"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">test_mean)'</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -406,8 +416,11 @@ if (relax.model_set == "All") { // run all the models</td>
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<pre style="margin: 0;"> <span id="LC416" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            </span></span>
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            </span></span>
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<pre style="margin: 0;"> <span id="LC418" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">DeclareGlobalWithRanges ("relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">bl</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">scaler"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> 1</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> 0</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> 1000);</span></span>
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            for (i</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> v; in; relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_grid) {</span></span>
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                v</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">"relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">bl</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">scaler"</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;"> = {terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">id : "relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">bl</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">scaler"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">fit</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">MLE : Random (2</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;">4)};</span></span>
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            }</span></span>
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            </span></span>
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                         </span></span>
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                         <span class="idiff left right"> </span></span></span>
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<pre style="margin: 0;"> <span id="LC424" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">grid_search</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">results =  estimators</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">FitLF (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">filter_names</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">trees</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;">{ "0" : {"DEFAULT" : "relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">ge"}}</span><span class="nf" style="color: #900; font-weight: 600;">,</span></span>
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412
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425
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<pre style="margin: 0;"> <span id="LC425" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                                        relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">final_partitioned_mg_results</span><span class="nf" style="color: #900; font-weight: 600;">,</span></span>
</pre>
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413
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<td class="diff-line-num new_line" data-linenumber="426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
426
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<pre style="margin: 0;"> <span id="LC426" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                                        relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">model_object_map</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> </span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -429,7 +442,8 @@ if (relax.model_set == "All") { // run all the models</td>
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<pre style="margin: 0;"> <span id="LC442" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                                        }</span></span>
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<td class="diff-line-num new_line" data-linenumber="443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC443" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            );</span></span>
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            </span></span>
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<td class="diff-line-num new_line old" data-linenumber="445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="brainfuck"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;"> </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;"> </span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
447
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<pre style="margin: 0;"> <span id="LC447" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">general_descriptive</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">fit =  estimators</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">FitLF (relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">filter_names</span><span class="nf" style="color: #900; font-weight: 600;">,</span></span>
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<td class="diff-line-num new_line" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
448
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<pre style="margin: 0;"> <span id="LC448" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                                        relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">trees</span><span class="nf" style="color: #900; font-weight: 600;">,</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
435
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<td class="diff-line-num new_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC449" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                                        { "0" : {"DEFAULT" : "relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">ge"}}</span><span class="nf" style="color: #900; font-weight: 600;">,</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1462,6 +1476,31 @@ function relax.init_grid_setup (omega_distro) {</td>
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1476
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<pre style="margin: 0;"> <span id="LC1476" class="line" lang="brainfuck"></span>
</pre>
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1477
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<pre style="margin: 0;"> <span id="LC1477" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">//</span><span class="nf" style="color: #900; font-weight: 600;">------------------------------------------------------------------------------</span></span>
</pre>
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1464
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<td class="diff-line-num new_line" data-linenumber="1478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1478
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<pre style="margin: 0;"> <span id="LC1478" class="line" lang="brainfuck"></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="1479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1479" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">function relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">init_grid_setup_scaled (omega_distro) {</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="1480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1480" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    utility</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">ForEachPair (omega_distro</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">rates</span><span class="p">]</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "_index_"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "_name_"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1481
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1481" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        '</span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1482
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<pre style="margin: 0;">+<span id="LC1482" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">              relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_ranges </span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">_name_</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;"> = {</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1483" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1483
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<pre style="margin: 0;">+<span id="LC1483" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">lower_bound : 0</span><span class="nf" style="color: #900; font-weight: 600;">,</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1484
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1484" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">upper_bound : 1</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1485
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1485" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">             };</span></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1486" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1486
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1486" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            </span></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1487
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1487" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        '</span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1488" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1488
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1488" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    );</span></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1489
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1489" class="line" lang="brainfuck"></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1490
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1490" class="line" lang="brainfuck"></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1491
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<pre style="margin: 0;">+<span id="LC1491" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    utility</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">ForEachPair (omega_distro</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">weights</span><span class="p">]</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "_index_"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> "_name_"</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> </span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1492
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1492" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        '</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1493
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1493" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">             relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">initial_ranges </span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">_name_</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;"> = {</span></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1494
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1494" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">lower_bound : 0</span><span class="nf" style="color: #900; font-weight: 600;">,</span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1495
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1495" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">                terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">upper_bound : 1</span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1496
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1496" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">            };</span></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1497
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1497" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        '</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1498
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1498" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    );</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1499
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1499" class="line" lang="brainfuck"></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1500" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1500
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1500" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">}</span></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1501
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1501" class="line" lang="brainfuck"></span>
</pre>
</td>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1502" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1502
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1502" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">//</span><span class="nf" style="color: #900; font-weight: 600;">------------------------------------------------------------------------------</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="1503" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1503
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC1503" class="line" lang="brainfuck"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1465" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1465
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<td class="diff-line-num new_line" data-linenumber="1504" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1504
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<pre style="margin: 0;"> <span id="LC1504" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">lfunction relax</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">_renormalize (v</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> distro</span><span class="nf" style="color: #900; font-weight: 600;">,</span><span class="c1" style="color: #998; font-style: italic;"> mean) {</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1466" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1466
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<td class="diff-line-num new_line" data-linenumber="1505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1505
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1505" class="line" lang="brainfuck"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1467" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1467
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<td class="diff-line-num new_line" data-linenumber="1506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1506
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<pre style="margin: 0;"> <span id="LC1506" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    parameters</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">SetValues (v);</span></span>
</pre>
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<br>
</li>
<li id="c7933e171033f4eac9d83419583cca5474f9266c">
<a href="https://salsa.debian.org/med-team/hyphy/-/commit/2c08adc8310d07820de52e25099edcee3556498b#c7933e171033f4eac9d83419583cca5474f9266c"><strong>res/TemplateBatchFiles/libv3/tasks/estimators.bf</strong></a>
<hr>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -185,7 +185,7 @@ function estimators.SetGlobals2(key2, value) {</td>
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185
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    if (Type(__init_value) != "AssociativeList") {</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
186
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186
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC186" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        __init_value = (initial_values</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">global</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;">)</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">key2</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
187
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<td class="diff-line-num new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    }</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<td class="diff-line-num new_line old" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
</td>
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right">        </span></span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
</td>
<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="brainfuck"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
189
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<td class="diff-line-num new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    </span></span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
190
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<td class="diff-line-num new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">    if (Type(__init_value) == "AssociativeList") {</span></span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
191
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<td class="diff-line-num new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
191
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC191" class="line" lang="brainfuck"><span class="c1" style="color: #998; font-style: italic;">        if (__init_value</span><span class="p">[</span><span class="c1" style="color: #998; font-style: italic;">terms</span><span class="nf" style="color: #900; font-weight: 600;">.</span><span class="c1" style="color: #998; font-style: italic;">fix</span><span class="p">]</span><span class="c1" style="color: #998; font-style: italic;">) {</span></span>
</pre>
</td>
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</table>
<br>
</li>
<li id="2a8dd324ded753b0b3c559ac3950a2881ccd7a93">
<a href="https://salsa.debian.org/med-team/hyphy/-/commit/2c08adc8310d07820de52e25099edcee3556498b#2a8dd324ded753b0b3c559ac3950a2881ccd7a93"><strong>src/core/likefunc.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2675,7 +2675,7 @@ void    _LikelihoodFunction::CheckDependentBounds (void) {</td>
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<pre style="margin: 0;"> <span id="LC2675" class="line" lang="cpp">        <span class="n" style="color: #333;">lowerBounds</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">index</span><span class="p">]</span>      <span class="o" style="font-weight: 600;">=</span>   <span class="n" style="color: #333;">cornholio</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">GetLowerBound</span><span class="p">();</span></span>
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<pre style="margin: 0;"> <span id="LC2676" class="line" lang="cpp">        <span class="n" style="color: #333;">upperBounds</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">index</span><span class="p">]</span>      <span class="o" style="font-weight: 600;">=</span>   <span class="n" style="color: #333;">cornholio</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">GetUpperBound</span><span class="p">();</span></span>
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<pre style="margin: 0;"> <span id="LC2677" class="line" lang="cpp">        </span>
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<pre style="margin: 0;">-<span id="LC2678" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "_LikelihoodFunction::CheckDependentBounds variable %s (%d), current value %g, range %g to %g\n", cornholio->theName-><span class="idiff left right">sData</span>, index, currentValues.theData[index], lowerBounds.theData[index], upperBounds.theData[index]);</span></span>
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<pre style="margin: 0;">+<span id="LC2678" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "_LikelihoodFunction::CheckDependentBounds variable %s (%d), current value %g, range %g to %g\n", cornholio->theName-><span class="idiff left right">get_str()</span>, index, currentValues.theData[index], lowerBounds.theData[index], upperBounds.theData[index]);</span></span>
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<pre style="margin: 0;"> <span id="LC2679" class="line" lang="cpp">        </span>
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<pre style="margin: 0;"> <span id="LC2680" class="line" lang="cpp">        <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">badApple</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">currentValues</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">index</span><span class="p">]</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">lowerBounds</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">index</span><span class="p">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">currentValues</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">index</span><span class="p">]</span><span class="o" style="font-weight: 600;">></span><span class="n" style="color: #333;">upperBounds</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">index</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC2681" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">badApple</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2734,7 +2734,7 @@ void    _LikelihoodFunction::CheckDependentBounds (void) {</td>
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<pre style="margin: 0;"> <span id="LC2734" class="line" lang="cpp">            <span class="n" style="color: #333;">SetIthIndependent</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="n" style="color: #333;">temp</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC2735" class="line" lang="cpp">        <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC2736" class="line" lang="cpp">        </span>
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<pre style="margin: 0;">-<span id="LC2737" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "\n%s\n", _String((_String*)dependancies.toStr()).<span class="idiff left right">sData</span>);</span></span>
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<pre style="margin: 0;">+<span id="LC2737" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "\n%s\n", _String((_String*)dependancies.toStr()).<span class="idiff left right">get_str()</span>);</span></span>
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<pre style="margin: 0;"> <span id="LC2738" class="line" lang="cpp">        </span>
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<pre style="margin: 0;"> <span id="LC2739" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">// now we can go through the dependant variables which are out of bounds one at a time</span></span>
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<pre style="margin: 0;"> <span id="LC2740" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">// and attempt to move them back in.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2863,16 +2863,16 @@ void    _LikelihoodFunction::CheckDependentBounds (void) {</td>
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<pre style="margin: 0;"> <span id="LC2863" class="line" lang="cpp">        </span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="2864" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2864" class="line" lang="cpp">        <span class="n" style="color: #333;">tagged</span><span class="p">.</span><span class="n" style="color: #333;">ReorderList</span><span class="p">();</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2865" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="2865" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2865
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<pre style="margin: 0;"> <span id="LC2865" class="line" lang="cpp">        </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2866" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="2866" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC2866" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//<span class="idiff left right"> fprintf (stderr, "Tagged the following variables %s\n", _String((_String*)_aux.toStr()).sData</span>);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2867" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="2866" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2866" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//<span class="idiff left right">fprintf (stderr, "Tagged the following variables %s\n", _String((_String*)_aux.toStr()).get_str()</span>);</span></span>
</pre>
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<td class="diff-line-num new_line" data-linenumber="2867" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2867
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<pre style="margin: 0;"> <span id="LC2867" class="line" lang="cpp">        </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2868" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="2868" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2868
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<pre style="margin: 0;"> <span id="LC2868" class="line" lang="cpp">        </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2869" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2869
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<td class="diff-line-num new_line" data-linenumber="2869" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2869
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<pre style="margin: 0;"> <span id="LC2869" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">index</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">indexInd</span><span class="p">.</span><span class="n" style="color: #333;">lLength</span><span class="p">;</span> <span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2870
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<td class="diff-line-num new_line" data-linenumber="2870" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2870
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<pre style="margin: 0;"> <span id="LC2870" class="line" lang="cpp">            <span class="n" style="color: #333;">dependancies</span><span class="p">.</span><span class="n" style="color: #333;">Store</span> <span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="n" style="color: #333;">GetIthIndependentBound</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="nb" style="color: #0086b3;">true</span><span class="p">));</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2871" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2871
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<td class="diff-line-num new_line old" data-linenumber="2871" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC2871" class="line" lang="cpp">            <span class="n" style="color: #333;">dependancies</span><span class="p">.</span><span class="n" style="color: #333;">Store</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">,(</span><span class="n" style="color: #333;">GetIthIndependentBound</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="nb" style="color: #0086b3;">false</span><span class="p">)</span><span class="o" style="font-weight: 600;">></span><span class="mi" style="color: #099;">10</span><span class="o" style="font-weight: 600;">?</span><span class="mi" style="color: #099;">10</span><span class="o" style="font-weight: 600;">:</span><span class="n" style="color: #333;">GetIthIndependentBound</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="nb" style="color: #0086b3;"><span class="idiff left right">tru</span>e</span><span class="p">))</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">dependancies</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">));</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2872" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="2871" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2871
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<pre style="margin: 0;">+<span id="LC2871" class="line" lang="cpp">            <span class="n" style="color: #333;">dependancies</span><span class="p">.</span><span class="n" style="color: #333;">Store</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">,(</span><span class="n" style="color: #333;">GetIthIndependentBound</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="nb" style="color: #0086b3;">false</span><span class="p">)</span><span class="o" style="font-weight: 600;">></span><span class="mi" style="color: #099;">10</span><span class="o" style="font-weight: 600;">?</span><span class="mi" style="color: #099;">10</span><span class="o" style="font-weight: 600;">:</span><span class="n" style="color: #333;">GetIthIndependentBound</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="nb" style="color: #0086b3;"><span class="idiff left right">fals</span>e</span><span class="p">))</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">dependancies</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">));</span></span>
</pre>
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2872
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<td class="diff-line-num new_line" data-linenumber="2872" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2872
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<pre style="margin: 0;"> <span id="LC2872" class="line" lang="cpp">            <span class="n" style="color: #333;">dependancies</span><span class="p">.</span><span class="n" style="color: #333;">Store</span> <span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="n" style="color: #333;">GetIthIndependent</span> <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">));</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2873" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2873
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<td class="diff-line-num new_line" data-linenumber="2873" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2873
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<pre style="margin: 0;"> <span id="LC2873" class="line" lang="cpp">        <span class="p">}</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2874" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2874
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<td class="diff-line-num new_line" data-linenumber="2874" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC2874" class="line" lang="cpp">        </span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2875" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="2875" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC2875" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//<span class="idiff left right"> fprintf (stderr, "\n%s\n", _String((_String*)dependancies.toStr()).sData</span>);</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2876" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<td class="diff-line-num new new_line" data-linenumber="2875" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2875" class="line" lang="cpp">        <span class="c1" style="color: #998; font-style: italic;">//<span class="idiff left right">fprintf (stderr, "\n%s\n", _String((_String*)dependancies.toStr()).get_str()</span>);</span></span>
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<pre style="margin: 0;"> <span id="LC2876" class="line" lang="cpp">        </span>
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<pre style="margin: 0;"> <span id="LC2877" class="line" lang="cpp">        </span>
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<pre style="margin: 0;"> <span id="LC2878" class="line" lang="cpp">        <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0L</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">10000L</span><span class="p">;</span> <span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2880" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2880,14 +2880,14 @@ void    _LikelihoodFunction::CheckDependentBounds (void) {</td>
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<pre style="margin: 0;"> <span id="LC2880" class="line" lang="cpp">            <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0L</span><span class="p">;</span> <span class="n" style="color: #333;">v</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">_aux</span><span class="p">.</span><span class="n" style="color: #333;">lLength</span><span class="p">;</span> <span class="n" style="color: #333;">v</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC2881" class="line" lang="cpp">                <span class="n" style="color: #333;">index</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">_aux</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">v</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC2882" class="line" lang="cpp">                <span class="n" style="color: #333;">SetIthIndependent</span>   <span class="p">(</span><span class="n" style="color: #333;">index</span><span class="p">,</span><span class="n" style="color: #333;">dependancies</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">)</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">genrand_real2</span><span class="p">()</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">dependancies</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="n" style="color: #333;">index</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC2883" class="line" lang="cpp">                <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "[%d] %s => %g<span class="idiff left right">\n", index, GetIthIndependentName(index)->sData, GetIthIndependent(</span>index));</span></span>
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<td class="diff-line-num new old_line" data-linenumber="2884" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
 
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<pre style="margin: 0;">+<span id="LC2883" class="line" lang="cpp">                <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "[%d] %s => %g<span class="idiff left right"> (%g - %g)\n", index, GetIthIndependentName(index)->get_str(), GetIthIndependent(index), dependancies(0,index), dependancies(1,</span>index));</span></span>
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<pre style="margin: 0;"> <span id="LC2884" class="line" lang="cpp">            <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC2885" class="line" lang="cpp">            <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">nonConstantDep</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">lLength</span><span class="p">;</span> <span class="n" style="color: #333;">j</span><span class="o" style="font-weight: 600;">++</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC2886" class="line" lang="cpp">                <span class="c1" style="color: #998; font-style: italic;">// check whether any of the dependent variables are out of bounds</span></span>
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<pre style="margin: 0;"> <span id="LC2887" class="line" lang="cpp">                <span class="kt" style="color: #458; font-weight: 600;">long</span> <span class="n" style="color: #333;">j_corrected</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nonConstantIndices</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="n" style="color: #333;">j</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC2888" class="line" lang="cpp">                <span class="n" style="color: #333;">currentValues</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">j_corrected</span><span class="p">]</span>    <span class="o" style="font-weight: 600;">=</span>   <span class="n" style="color: #333;">LocateVar</span><span class="p">(</span><span class="n" style="color: #333;">nonConstantDep</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">list_data</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">])</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">Compute</span><span class="p">()</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">Value</span><span class="p">();</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2889" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2889" class="line" lang="cpp">                <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "[%d] %g (%g, %g)\n", j, j_corrected, currentValues.theData[j_corrected], lowerBounds.theData[j_corrected], upperBounds[j_corrected]);</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC2889" class="line" lang="cpp">                <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">currentValues</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">j_corrected</span><span class="p">]</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">lowerBounds</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">j_corrected</span><span class="p">]</span> <span class="o" style="font-weight: 600;">||</span> <span class="n" style="color: #333;">currentValues</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">j_corrected</span><span class="p">]</span><span class="o" style="font-weight: 600;">></span><span class="n" style="color: #333;">upperBounds</span><span class="p">.</span><span class="n" style="color: #333;">theData</span><span class="p">[</span><span class="n" style="color: #333;">j_corrected</span><span class="p">])</span> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC2890" class="line" lang="cpp">                    <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "[%d] %s => %g (%g, %g)\n", j, LocateVar(nonConstantDep->list_data[j])->GetName()->get_str(), j_corrected, currentValues.theData[j_corrected], lowerBounds.theData[j_corrected], upperBounds[j_corrected]);</span></span>
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<pre style="margin: 0;"> <span id="LC2891" class="line" lang="cpp">                    <span class="c1" style="color: #998; font-style: italic;">//fprintf (stderr, "===| CHECK FAILED\n");</span></span>
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<pre style="margin: 0;"> <span id="LC2892" class="line" lang="cpp">                    <span class="n" style="color: #333;">badConstraint</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">nonConstantDep</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">list_data</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">];</span></span>
</pre>
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<pre style="margin: 0;"> <span id="LC2893" class="line" lang="cpp">                    <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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