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<h3>
Michael R. Crusoe pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/pufferfish">Debian Med / pufferfish</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/18d91ee0a20dcfa8adb5da967214ba79b13409cd">18d91ee0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-07-08T17:44:44+02:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.3.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pufferfish/-/commit/574e179dc42a22c34907e665502e4bcb494ba689">574e179d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-19T08:03:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.4.0</pre>
</li>
</ul>
<h4>27 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#c7f40a54d00d6f8d8d6ed620e9eca2fc44022b21">
cmake/Modules/FindJemalloc.cmake
</a>
</li>
<li class="file-stats">
<a href="#0cdcd8b6fa9cad7b7edf84337624bd68723d9a99">
external/twopaco/graphdump/compact_vector/compact_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#c1a540cdfa755e5829e6e18f1f800bdb75d90d52">
external/twopaco/graphdump/graphdumpBinaryWriter.hpp
</a>
</li>
<li class="file-stats">
<a href="#e246b7a1c95906b59ca509ef776a45d2fb355183">
include/BooPHF.hpp
</a>
</li>
<li class="file-stats">
<a href="#de02568c28d56bc84ff0af2e1219cb4a6ccdf129">
<span class="new-file">
+
include/BulkChunk.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#c92fe97bfcf70e719e41bcb995080af63080e6ab">
include/CanonicalKmer.hpp
</a>
</li>
<li class="file-stats">
<a href="#bdae7d1bb96a0125504ac0350f4eb4ded0ce8a91">
include/CanonicalKmerIterator.hpp
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</li>
<li class="file-stats">
<a href="#335609a35be34ca99f8e15537a878ae3e11a6051">
include/FastxParserThreadUtils.hpp
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</li>
<li class="file-stats">
<a href="#f46f3adfc4612060db21de5f61d5e5797a5188a6">
include/Kmer.hpp
</a>
</li>
<li class="file-stats">
<a href="#55b80417ada337567eab3c468442b3f6adecfa14">
include/MemChainer.hpp
</a>
</li>
<li class="file-stats">
<a href="#1e611787eca8d4d72a3cb5c9fb2540c530f467cd">
include/MemCollector.hpp
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</li>
<li class="file-stats">
<a href="#b05a13d547dca02a3a175af0ca173edcb6c1cfc8">
include/ProgOpts.hpp
</a>
</li>
<li class="file-stats">
<a href="#c4d7fdcc35daf07fcc1ca0d4aa58e38a4ce4168f">
include/PuffAligner.hpp
</a>
</li>
<li class="file-stats">
<a href="#5645c619e1120d632ee42ac9ef9d4bc62cb1326f">
include/PufferfishBaseIndex.hpp
</a>
</li>
<li class="file-stats">
<a href="#247bc555f1e15bad867296126e723eaf9d1bc46a">
include/PufferfishIndex.hpp
</a>
</li>
<li class="file-stats">
<a href="#d4fd4cb5a221706a163f1b94b73f454b3567c80a">
include/PufferfishLossyIndex.hpp
</a>
</li>
<li class="file-stats">
<a href="#143a87ac426bbe4bc3716f3516042419523b946f">
include/PufferfishSparseIndex.hpp
</a>
</li>
<li class="file-stats">
<a href="#37c0d5d1cae61dd7519dd3e2835b746b079c7ef4">
include/SAMWriter.hpp
</a>
</li>
<li class="file-stats">
<a href="#90d9889548353380c5f27a807e12057452f96e71">
include/Util.hpp
</a>
</li>
<li class="file-stats">
<a href="#dc2ebf040742689fa7ebf2b01bc705f4a087487e">
include/chobo/memory_view.hpp
</a>
</li>
<li class="file-stats">
<a href="#3f17194e2fa0f544f5b7b6926afa01fa8e56ee5c">
include/chobo/static_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#c84d05e5a512e36c6f9052a1ef78cdafde794749">
include/clipp.h
</a>
</li>
<li class="file-stats">
<a href="#b6de805fdac0781d12cd98030024ff2bc7779ef7">
include/compact_vector/compact_vector.hpp
</a>
</li>
<li class="file-stats">
<a href="#fb230ff37deeab1433d012313deca9eb4ad78929">
include/ksw2pp/KSW2Aligner.hpp
</a>
</li>
<li class="file-stats">
<a href="#40bf624bb4e86da16e9e69e8a68089680c5b0e14">
include/ksw2pp/ksw2.h
</a>
</li>
<li class="file-stats">
<a href="#1ef6d289b97a75e5480bd8087c32ebb4e5ff2fb5">
include/parallel_hashmap/phmap.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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