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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/pbcopper">Debian Med / pbcopper</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbcopper/-/commit/afac726e5dcd9da411558dc704043b8a768f5754">afac726e</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-12-23T18:17:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbcopper/-/commit/3f036d0c82c1a8c418b8b7725630eccf6cad5865">3f036d0c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-12-23T18:17:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.9.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbcopper/-/commit/0f3b7ca297ba2dab6a40e35f69d93a36a9389c8a">0f3b7ca2</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-12-23T18:17:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.9.0+dfsg'
Update to upstream version '1.9.0+dfsg'
with Debian dir 1fdaa85c814bc83be18e0de856765bb054b56129</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbcopper/-/commit/fd5576c9478074d2509b42ba1dc38549d72f54a6">fd5576c9</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2020-12-23T18:18:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbcopper/-/commit/0a3363031d25811e66b1713897f575c386a5242b">0a336303</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-21T13:43:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream now uses simde, adapt accordingly
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbcopper/-/commit/4080d87ff25e04565d867006e6cff67a55eca5bb">4080d87f</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-21T13:44:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">remove unused patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/pbcopper/-/commit/8b29001d96e062ca2049a93ed773463b97bf94bf">8b29001d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-21T14:24:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">bump SO version
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8a403e1ae576b7c01a0bfdd12050a017a5ea7939">
<span class="deleted-file">
−
debian/patches/simde-ppc64el.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#5dc91bdd30262777c0556235b73413cd5865a144">
debian/patches/simde.patch
</a>
</li>
<li class="file-stats">
<a href="#feedf4d0444f717d7227468a9529c2cf9740b6fd">
include/meson.build
</a>
</li>
<li class="file-stats">
<a href="#06d5752151db8a61365b4b492732bb08fb61f036">
include/pbcopper/PbcopperConfig.h
</a>
</li>
<li class="file-stats">
<a href="#7f0a1d60228c9cd46fd38ff5edc38f5ef6f0ef85">
<span class="new-file">
+
include/pbcopper/align/EdlibAlign.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#65a3ebe149a1894adb090e490cec8ccb443a7c4c">
include/pbcopper/data/Cigar.h
</a>
</li>
<li class="file-stats">
<a href="#7f5f5348027cc5e9ba1384c28304b82b84dd74b8">
include/pbcopper/data/FrameEncoders.h
</a>
</li>
<li class="file-stats">
<a href="#8d71970d77621459fe1c1bb5563a611db8ed78f4">
<span class="new-file">
+
include/pbcopper/data/IntervalTree.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#7ac97d68674ba5c918d4a1ca0bf7f45125b3a56b">
include/pbcopper/data/Strand.h
</a>
</li>
<li class="file-stats">
<a href="#f1aa7465c821972d61e254a5f1b17e319225df3d">
<span class="new-file">
+
include/pbcopper/parallel/ThreadCount.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#b4ec4b3d340de291631805646ce71f3f4aeb7fd4">
include/pbcopper/pbmer/KFGraph.h
</a>
</li>
<li class="file-stats">
<a href="#60af3e57e588aca963568da85d883548ef77ab8b">
<span class="new-file">
+
include/pbcopper/poa/PoaConsensus.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#93809311eb2d04a1c1b3a153f24133654495d363">
<span class="new-file">
+
include/pbcopper/poa/PoaGraph.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#0987e5acb76c03ea7d8a94d6d82ab6f3c3014c3a">
<span class="new-file">
+
include/pbcopper/poa/RangeFinder.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3af5f45f3a2c4e34471c582aabd9cb875b7fbb08">
<span class="new-file">
+
include/pbcopper/poa/SparsePoa.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#cb4f4f97b1c2d27ce6493242604a42ffcd3f862e">
<span class="new-file">
+
include/pbcopper/third-party/ksw2/LICENSE.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#1058371cb08539a643305b693ebf49acb908985f">
<span class="new-file">
+
include/pbcopper/third-party/ksw2/kalloc.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#549546123ae17b09b6d9925680b6182737aacc19">
<span class="new-file">
+
include/pbcopper/third-party/ksw2/ksw2.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#dfd12a2c24aed7ee34768f4e2e8dfbb3050f3213">
include/pbcopper/utility/Alarm.h
</a>
</li>
<li class="file-stats">
<a href="#9581659eee64b31ec46eec6708200b89dfcf794e">
include/pbcopper/utility/SequenceUtils.h
</a>
</li>
<li class="file-stats">
<a href="#61fc46a48a7e779004e12e903f4079cd17c9a39a">
<span class="deleted-file">
−
include/pbcopper/utility/StringView.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#0cc1139e3347f573ae1feee5b73dbc8a8a21fcfa">
meson.build
</a>
</li>
<li class="file-stats">
<a href="#b3a6954e47e4b17be4308cedf4e790d9f1d24558">
<span class="new-file">
+
src/align/EdlibAlign.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#fc4a56080ce5da93219ab7a36d00974e36562704">
src/align/cssw/ssw.c
</a>
</li>
<li class="file-stats">
<a href="#21e58f0448021af2ee261bfb70284e46d3c421ee">
src/align/cssw/ssw.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/pbcopper/-/compare/d9b3e96b2bce1ea4bede00e3197942ec150e0689...8b29001d96e062ca2049a93ed773463b97bf94bf">View it on GitLab</a>.
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