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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/kmc">Debian Med / kmc</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/81f0b3e6df26043e3b979a7064d2680522ba0b5f">81f0b3e6</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-22T12:38:42+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Support non-x86 systems via libsimde-dev
</pre>
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<strong><a href="https://salsa.debian.org/med-team/kmc/-/commit/63615ec8dbaee3262108178c990039f0bae8f872">63615ec8</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2021-01-22T12:38:42+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 3.1.1+dfsg-2 to unstable
</pre>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#4c0e18367b4a4c2fb5a4fb13dd30c8d2df5876b2">
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+
debian/patches/simde
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/kmc/-/compare/7f6dd3e1ee626e102fe8de456e690f33aefa4cbf...63615ec8dbaee3262108178c990039f0bae8f872#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">kmc (3.1.1+dfsg-2) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">kmc (3.1.1+dfsg-2) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> [ Étienne Mollier ]</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * Remove non-portable -m64 flag put back by error.</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- Étienne Mollier <etienne.mollier@mailoo.org> Fri, 11 Dec 2020 00:07:16 +0100</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Support non-x86 systems via libsimde-dev. Closes: #977498</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Fri, 22 Jan 2021 11:53:55 +0100</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">kmc (3.1.1+dfsg-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/kmc/-/compare/7f6dd3e1ee626e102fe8de456e690f33aefa4cbf...63615ec8dbaee3262108178c990039f0bae8f872#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,7 +13,8 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libbz2-dev,</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> help2man,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> asciidoctor,</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> d-shlibs</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> d-shlibs,</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> libsimde-dev</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Standards-Version: 4.5.1</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/kmc</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/kmc.git</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +23,7 @@ Rules-Requires-Root: no</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Package: kmc</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Built-Using: ${simde:Built-Using}</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Description: count kmers in genomic sequences</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,6 +50,7 @@ Description: count kmers in genomic sequences</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> order of the size of input data (usually it is smaller).</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext">Package: libkmc-dev</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">Built-Using: ${simde:Built-Using}</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/kmc/-/compare/7f6dd3e1ee626e102fe8de456e690f33aefa4cbf...63615ec8dbaee3262108178c990039f0bae8f872#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,3 +4,4 @@ makefile.patch</td>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">newish_gcc_build_fix.patch</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">disable-python-bindings.patch</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">spelling.patch</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">simde</span></pre>
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<a href="https://salsa.debian.org/med-team/kmc/-/compare/7f6dd3e1ee626e102fe8de456e690f33aefa4cbf...63615ec8dbaee3262108178c990039f0bae8f872#4c0e18367b4a4c2fb5a4fb13dd30c8d2df5876b2"><strong>debian/patches/simde</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Author: Michael R. Crusoe <crusoe@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Description: support non-x86 systems via libsimde-dev</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/kmer_counter/cpu_info.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/kmer_counter/cpu_info.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -38,6 +38,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> string vendor, brand;</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> void cpuid(int *result, int function_id) const</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#if defined(__x86_64__) || defined(__i386__)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> #ifdef _MSC_VER</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> __cpuidex(result, function_id, 0);</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="p">@@ -53,10 +54,12 @@</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> __asm__("cpuid\n\t"</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> : "=a" (result[0]), "=b" (result[1]), "=c" (result[2]), "=d" (result[3]) : "0" (function_id), "c"(0));</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> #endif </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#endif</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> CpuInfoImpl()</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#if defined(__x86_64__) || defined(__i386__)</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> array<int, 4> cpui = { -1 };</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> cpuid(cpui.data(), 0);</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> int nIds_ = cpui[0];</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="p">@@ -90,6 +93,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> std::bitset<32> EBX = data_[7][1];</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> avx2 = EBX[5];</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#else</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sse2=true;</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#endif</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> const string& GetVendor() const</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="p">@@ -145,4 +151,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> bool CCpuInfo::AVX_Enabled() { return cpu_info_impl.avx; }</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"> bool CCpuInfo::AVX2_Enabled() { return cpu_info_impl.avx2; }</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-// ***** EOF</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// ***** EOF</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/kmer_counter/intr_copy.h</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/kmer_counter/intr_copy.h</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="p">@@ -11,8 +11,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"> #ifndef _INTR_COPY_H</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"> #define _INTR_COPY_H</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <emmintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#include <immintrin.h></span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define SIMDE_ENABLE_NATIVE_ALIASES</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#include <simde/x86/sse2.h> </span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> #ifndef WIN32</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"> typedef long long __int64;</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="p">@@ -89,4 +89,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-// ***** EOF</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// ***** EOF</span></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/kmer_counter/kmc.h</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/kmer_counter/kmc.h</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="p">@@ -1112,6 +1112,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"> #ifdef __APPLE__</span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> sort_func = RadixSort::RadixSortMSD<CKmer<SIZE>, SIZE>;</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> CSmallSort<SIZE>::Adjust(384);</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#elif !defined(__x86_64__) && !defined(__i386__)</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ sort_func = RadulsSort::RadixSortMSD_SSE2<CKmer<SIZE>>;</span></span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"> #else </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"> auto proc_name = CCpuInfo::GetBrand();</span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"> bool is_intel = CCpuInfo::GetVendor() == "GenuineIntel";</span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/makefile</span></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/makefile</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="diff"><span class="p">@@ -30,11 +30,16 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"> $(KMC_MAIN_DIR)/kmer.o \</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"> $(KMC_MAIN_DIR)/splitter.o \</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="diff"> $(KMC_MAIN_DIR)/kb_collector.o</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ifeq (1,$(SIMD))</span></span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="diff"> RADULS_OBJS = \</span>
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<td class="diff-line-num new new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"> $(KMC_MAIN_DIR)/raduls_sse2.o \</span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"> $(KMC_MAIN_DIR)/raduls_sse41.o \</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="diff"> $(KMC_MAIN_DIR)/raduls_avx2.o \</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="diff"> $(KMC_MAIN_DIR)/raduls_avx.o</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+else</span></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+RADULS_OBJS = \</span></span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+$(KMC_MAIN_DIR)/raduls_sse2.o</span></span>
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+endif</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="diff"> </span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="diff"> KMC_DUMP_OBJS = \</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="diff"> $(KMC_DUMP_DIR)/nc_utils.o \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="diff"><span class="p">@@ -66,6 +71,7 @@</span></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="diff"> $(KMC_TOOLS_OBJS): %.o: %.cpp</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"> $(CXX) $(CPPFLAGS) $(KMC_TOOLS_CXXFLAGS) -c $< -o $@</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ifeq (1,$(SIMD))</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="diff"> $(KMC_MAIN_DIR)/raduls_sse2.o: $(KMC_MAIN_DIR)/raduls_sse2.cpp</span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="diff"> $(CXX) $(CPPFLAGS) $(CXXFLAGS) -msse2 -c $< -o $@</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
100
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC100" class="line" lang="diff"> $(KMC_MAIN_DIR)/raduls_sse41.o: $(KMC_MAIN_DIR)/raduls_sse41.cpp</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="diff"><span class="p">@@ -74,6 +80,10 @@</span></span>
</pre>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"> $(CXX) $(CPPFLAGS) $(CXXFLAGS) -mavx -c $< -o $@</span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="diff"> $(KMC_MAIN_DIR)/raduls_avx2.o: $(KMC_MAIN_DIR)/raduls_avx2.cpp</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="diff"> $(CXX) $(CPPFLAGS) $(CXXFLAGS) -mavx2 -c $< -o $@</span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+else</span></span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+$(KMC_MAIN_DIR)/raduls_sse2.o: $(KMC_MAIN_DIR)/raduls_sse2.cpp</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CXX) $(CPPFLAGS) $(CXXFLAGS) -c $< -o $@</span></span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+endif</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"> </span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"> kmc: $(KMC_OBJS) $(RADULS_OBJS)</span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"> -mkdir -p $(KMC_BIN_DIR)</span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/kmer_counter/splitter.cpp</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/kmer_counter/splitter.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"><span class="p">@@ -350,7 +350,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> if (!both_strands && is_rev_comp) //if read is reversed and kmc was run to count all (not only canonical) kmers read must be transformed back</span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"> {</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"> //static const char rev_maping[] = "=TGMCRSVAWYHKDBN";</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- static const char rev_maping[] = { -1, 3, 2, -1, 1, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, -1 };// "=TGMCRSVAWYHKDBN";</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ static const int rev_maping[] = { -1, 3, 2, -1, 1, -1, -1, -1, 0, -1, -1, -1, -1, -1, -1, -1 };// "=TGMCRSVAWYHKDBN";</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="diff"> uint32 n_bytes = l_seq / 2;</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="diff"> uint64_t pos_after = pos + l_seq;</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="diff"> pos = pos_after;</span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="diff"><span class="p">@@ -369,7 +369,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="diff"> else</span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- static const char maping[] = { -1, 0, 1, -1, 2, -1, -1, -1, 3, -1, -1, -1, -1, -1, -1, -1 };//"=ACMGRSVTWYHKDBN";</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ static const int maping[] = { -1, 0, 1, -1, 2, -1, -1, -1, 3, -1, -1, -1, -1, -1, -1, -1 };//"=ACMGRSVTWYHKDBN";</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="diff"> uint32 n_bytes = l_seq / 2;</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="diff"> for (uint32_t ii = 0; ii < n_bytes; ++ii)</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="diff"> {</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="diff"><span class="p">@@ -956,4 +956,4 @@</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="diff"> template class CWSmallKSplitter<uint32>;</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="diff"> template class CWSmallKSplitter<uint64>;</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="diff"> </span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-// ***** EOF</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// ***** EOF</span></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/kmer_counter/raduls.h</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/kmer_counter/raduls.h</span></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="diff"><span class="p">@@ -23,7 +23,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="diff"> {</span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="diff"> template<typename KMER_T></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="diff"> void RadixSortMSD_SSE2(KMER_T* kmers, KMER_T* tmp, uint64 n_recs, uint32 byte, uint32 n_threads, CMemoryPool* pmm_radix_buf);</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#if defined(__x86_64__) || defined(__i386__)</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="diff"> template<typename KMER_T></span>
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="diff"> void RadixSortMSD_SSE41(KMER_T* kmers, KMER_T* tmp, uint64 n_recs, uint32 byte, uint32 n_threads, CMemoryPool* pmm_radix_buf);</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="diff"><span class="p">@@ -32,8 +32,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="diff"> </span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"> template<typename KMER_T></span>
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="diff"> void RadixSortMSD_AVX2(KMER_T* kmers, KMER_T* tmp, uint64 n_recs, uint32 byte, uint32 n_threads, CMemoryPool* pmm_radix_buf);</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#endif</span></span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="diff"> }</span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="diff"> </span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="diff"> #endif // RADULS_H</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="diff"> </span>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-// ***** EOF</span></span>
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// ***** EOF</span></span>
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- kmc.orig/kmer_counter/raduls_impl.h</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ kmc/kmer_counter/raduls_impl.h</span></span>
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"><span class="p">@@ -730,7 +730,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"> #define RADULS_RADIX_SORT_FUNNAME RadixSortMSD_AVX</span>
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="diff"> #elif defined(__SSE4_1__)</span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="diff"> #define RADULS_RADIX_SORT_FUNNAME RadixSortMSD_SSE41</span>
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#elif defined(__SSE2__)</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#else</span></span>
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="diff"> #define RADULS_RADIX_SORT_FUNNAME RadixSortMSD_SSE2</span>
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="diff"><span class="p">@@ -769,4 +769,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="diff"> #endif</span>
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-// ***** EOF</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="diff"><span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span> No newline at end of file</span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+// ***** EOF</span></span></pre>
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<a href="https://salsa.debian.org/med-team/kmc/-/compare/7f6dd3e1ee626e102fe8de456e690f33aefa4cbf...63615ec8dbaee3262108178c990039f0bae8f872#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,15 +3,26 @@</td>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">export DH_VERBOSE := 1</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">export DEB_CFLAGS_MAINT_APPEND+=-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">export DEB_CXXFLAGS_MAINT_APPEND+=-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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6
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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7
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">DATE := $(SOURCE_DATE_EPOCH)</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">mandir := $(CURDIR)/debian/man</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">debfolder := $(CURDIR)/debian</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">%:</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dh $@</span>
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14
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">ifneq (,$(filter $(DEB_HOST_ARCH),amd64 i386))</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> dh_auto_build -- SIMD=1</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">else</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> dh_auto_build</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">endif</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span>
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15
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26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">override_dh_install:</span>
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16
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> dh_install</span>
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17
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,3 +37,6 @@ override_dh_installman:</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> asciidoctor -a docdate='' -b manpage $(debfolder)/man_src/*.adoc</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> cp $(debfolder)/man_src/*.? $(mandir)</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> dh_installman --</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">override_dh_gencontrol:</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> dh_gencontrol -- -Vsimde:Built-Using="$(shell dpkg-query -f '$${source:Package} (= $${source:Version}), ' -W "libsimde-dev")"</span></pre>
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