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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/python-xopen">Debian Med / python-xopen</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45">a86084cc</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-01-24T13:02:09+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.0</pre>
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<h4>12 changed files:</h4>
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<a href="#899ce9c202bf7bb5480e72836c3edc773c9c4244">
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+
.github/workflows/ci.yml
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
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−
.travis.yml
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<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#efbb1c831f4dccaf4947527ba3b19d46b8fce42c">
src/xopen.egg-info/PKG-INFO
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<li class="file-stats">
<a href="#130400ead814acc859b193dc3cbbf772c4033be6">
src/xopen.egg-info/SOURCES.txt
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<li class="file-stats">
<a href="#6e4b43af27a8791950e7b2b103bd28759f29cab6">
src/xopen.egg-info/requires.txt
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<li class="file-stats">
<a href="#cd0c41236a43aa42f65b9818b06ef5809e2bc72b">
src/xopen/__init__.py
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<a href="#c4d1a3e7fce9843aafe06edbca23101b2b18507d">
src/xopen/_version.py
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<a href="#2ebeeaa3dbc2bfbb1271c926287d569231eedf02">
tests/test_xopen.py
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<li class="file-stats">
<a href="#61be067c7cf3bdbf8a6b021a2b5167eb30612d0c">
tox.ini
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<h4>Changes:</h4>
<li id="899ce9c202bf7bb5480e72836c3edc773c9c4244">
<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#899ce9c202bf7bb5480e72836c3edc773c9c4244"><strong>.github/workflows/ci.yml</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">CI</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"></span>
</pre>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"><span class="na" style="color: #008080;">on</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">push</span><span class="pi">,</span> <span class="nv" style="color: #008080;">pull_request</span><span class="pi">]</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"></span>
</pre>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="yaml"><span class="na" style="color: #008080;">jobs</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="yaml"> <span class="na" style="color: #008080;">lint</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="yaml"> <span class="na" style="color: #008080;">timeout-minutes</span><span class="pi">:</span> <span class="m" style="color: #099;">5</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="yaml"> <span class="na" style="color: #008080;">runs-on</span><span class="pi">:</span> <span class="s" style="color: #d14;">ubuntu-latest</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="yaml"> <span class="na" style="color: #008080;">strategy</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="yaml"> <span class="na" style="color: #008080;">matrix</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="yaml"> <span class="na" style="color: #008080;">python-version</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">3.7</span><span class="pi">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="yaml"> <span class="na" style="color: #008080;">toxenv</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">flake8</span><span class="pi">,</span> <span class="nv" style="color: #008080;">mypy</span><span class="pi">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/checkout@v2</span></span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Set up Python ${{ matrix.python-version }}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="yaml"> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/setup-python@v2</span></span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="yaml"> <span class="na" style="color: #008080;">with</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="yaml"> <span class="na" style="color: #008080;">python-version</span><span class="pi">:</span> <span class="s" style="color: #d14;">${{ matrix.python-version }}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install dependencies</span></span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="s" style="color: #d14;">python -m pip install tox</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Run tox ${{ matrix.toxenv }}</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="s" style="color: #d14;">tox -e ${{ matrix.toxenv }}</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="yaml"></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="yaml"> <span class="na" style="color: #008080;">test</span><span class="pi">:</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="yaml"> <span class="na" style="color: #008080;">timeout-minutes</span><span class="pi">:</span> <span class="m" style="color: #099;">5</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="yaml"> <span class="na" style="color: #008080;">runs-on</span><span class="pi">:</span> <span class="s" style="color: #d14;">${{ matrix.os }}</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="yaml"> <span class="na" style="color: #008080;">strategy</span><span class="pi">:</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="yaml"> <span class="na" style="color: #008080;">matrix</span><span class="pi">:</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="yaml"> <span class="na" style="color: #008080;">os</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">ubuntu-latest</span><span class="pi">]</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="yaml"> <span class="na" style="color: #008080;">python-version</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">3.6</span><span class="pi">,</span> <span class="nv" style="color: #008080;">3.7</span><span class="pi">,</span> <span class="nv" style="color: #008080;">3.8</span><span class="pi">,</span> <span class="nv" style="color: #008080;">3.9</span><span class="pi">,</span> <span class="nv" style="color: #008080;">pypy3</span><span class="pi">]</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="yaml"> <span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">os</span><span class="pi">:</span> <span class="s" style="color: #d14;">macos-latest</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="yaml"> <span class="na" style="color: #008080;">python-version</span><span class="pi">:</span> <span class="m" style="color: #099;">3.7</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">os</span><span class="pi">:</span> <span class="s" style="color: #d14;">ubuntu-20.04</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="yaml"> <span class="na" style="color: #008080;">python-version</span><span class="pi">:</span> <span class="m" style="color: #099;">3.7</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="yaml"> <span class="na" style="color: #008080;">with-isal</span><span class="pi">:</span> <span class="no" style="color: #008080;">true</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install pigz</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="pi">></span></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="yaml"> <span class="s" style="color: #d14;">if [[ ${{ startsWith(matrix.os, 'macos') }} = true ]]; then</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="yaml"> <span class="s" style="color: #d14;">brew install pigz;</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="yaml"> <span class="s" style="color: #d14;">else</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="yaml"> <span class="s" style="color: #d14;">sudo apt-get install pigz;</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="yaml"> <span class="s" style="color: #d14;">fi</span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install isal</span></span>
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<td class="diff-line-num new new_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="yaml"> <span class="na" style="color: #008080;">if</span><span class="pi">:</span> <span class="s" style="color: #d14;">matrix.with-isal && !startsWith(matrix.os, 'macos')</span></span>
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<td class="diff-line-num new new_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="s" style="color: #d14;">sudo apt-get install isal libisal-dev</span></span>
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<td class="diff-line-num new new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/checkout@v2</span></span>
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<td class="diff-line-num new new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Set up Python ${{ matrix.python-version }}</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="yaml"> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/setup-python@v2</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="yaml"> <span class="na" style="color: #008080;">with</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="yaml"> <span class="na" style="color: #008080;">python-version</span><span class="pi">:</span> <span class="s" style="color: #d14;">${{ matrix.python-version }}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install dependencies</span></span>
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<td class="diff-line-num new new_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="s" style="color: #d14;">python -m pip install tox</span></span>
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<td class="diff-line-num new new_line" data-linenumber="55" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Test</span></span>
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<td class="diff-line-num new new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="s" style="color: #d14;">tox -e py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="yaml"> <span class="na" style="color: #008080;">if</span><span class="pi">:</span> <span class="s" style="color: #d14;">matrix.with-isal == </span><span class="no" style="color: #008080;">null</span></span>
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<td class="diff-line-num new new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Test with isal</span></span>
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<td class="diff-line-num new new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="s" style="color: #d14;">tox -e isal</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="yaml"> <span class="na" style="color: #008080;">if</span><span class="pi">:</span> <span class="s" style="color: #d14;">matrix.with-isal</span></span>
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<td class="diff-line-num new new_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Upload coverage report</span></span>
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<td class="diff-line-num new new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="yaml"> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">codecov/codecov-action@v1</span></span>
</pre>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="yaml"></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="yaml"> <span class="na" style="color: #008080;">deploy</span><span class="pi">:</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="yaml"> <span class="na" style="color: #008080;">timeout-minutes</span><span class="pi">:</span> <span class="m" style="color: #099;">5</span></span>
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<td class="diff-line-num new new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="yaml"> <span class="na" style="color: #008080;">runs-on</span><span class="pi">:</span> <span class="s" style="color: #d14;">ubuntu-latest</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="yaml"> <span class="na" style="color: #008080;">needs</span><span class="pi">:</span> <span class="pi">[</span><span class="nv" style="color: #008080;">lint</span><span class="pi">,</span> <span class="nv" style="color: #008080;">test</span><span class="pi">]</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="yaml"> <span class="na" style="color: #008080;">if</span><span class="pi">:</span> <span class="s" style="color: #d14;">startsWith(github.ref, 'refs/tags')</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/checkout@v2</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="yaml"> <span class="na" style="color: #008080;">with</span><span class="pi">:</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="yaml"> <span class="na" style="color: #008080;">fetch-depth</span><span class="pi">:</span> <span class="m" style="color: #099;">0</span> <span class="c1" style="color: #998; font-style: italic;"># required for setuptools_scm</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Set up Python</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="yaml"> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">actions/setup-python@v2</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="yaml"> <span class="na" style="color: #008080;">with</span><span class="pi">:</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="yaml"> <span class="na" style="color: #008080;">python-version</span><span class="pi">:</span> <span class="m" style="color: #099;">3.7</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Make distributions</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="yaml"> <span class="na" style="color: #008080;">run</span><span class="pi">:</span> <span class="pi">|</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="yaml"> <span class="s" style="color: #d14;">python setup.py sdist</span></span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="yaml"> <span class="s" style="color: #d14;">python -m pip wheel --no-deps -w dist/ .</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="yaml"> <span class="s" style="color: #d14;">ls -l dist/</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">Publish to PyPI</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="yaml"> <span class="na" style="color: #008080;">uses</span><span class="pi">:</span> <span class="s" style="color: #d14;">pypa/gh-action-pypi-publish@v1.4.1</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="yaml"> <span class="na" style="color: #008080;">with</span><span class="pi">:</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="yaml"> <span class="na" style="color: #008080;">user</span><span class="pi">:</span> <span class="s" style="color: #d14;">__token__</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="yaml"> <span class="na" style="color: #008080;">password</span><span class="pi">:</span> <span class="s" style="color: #d14;">${{ secrets.pypi_password }}</span></span></pre>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="yaml"><span class="na" style="color: #008080;">language</span><span class="pi">:</span> <span class="s" style="color: #d14;">python</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="yaml"></span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="yaml"><span class="na" style="color: #008080;">dist</span><span class="pi">:</span> <span class="s" style="color: #d14;">focal</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="yaml"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="yaml"><span class="na" style="color: #008080;">cache</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="yaml"> <span class="na" style="color: #008080;">directories</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">$HOME/.cache/pip</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="yaml"></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="yaml"><span class="na" style="color: #008080;">python</span><span class="pi">:</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.5"</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.6"</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.7"</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.8"</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.9"</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="yaml"> <span class="pi">-</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">pypy3"</span></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="yaml"></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="yaml"><span class="na" style="color: #008080;">install</span><span class="pi">:</span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">sudo apt-get update && sudo apt-get install -y pigz</span></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">pip install --upgrade coverage codecov</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">pip install .</span></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="yaml"></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="yaml"><span class="na" style="color: #008080;">script</span><span class="pi">:</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">python setup.py --version</span> <span class="c1" style="color: #998; font-style: italic;"># Detect encoding problems</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">coverage run -m pytest</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="yaml"></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="yaml"><span class="na" style="color: #008080;">after_success</span><span class="pi">:</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">coverage combine</span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">codecov</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="yaml"></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="yaml"><span class="na" style="color: #008080;">env</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="yaml"> <span class="na" style="color: #008080;">global</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">TWINE_USERNAME=marcelm</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="yaml"></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="yaml"><span class="na" style="color: #008080;">jobs</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="yaml"> <span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">stage</span><span class="pi">:</span> <span class="s" style="color: #d14;">deploy</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="yaml"> <span class="na" style="color: #008080;">services</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">docker</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="yaml"> <span class="na" style="color: #008080;">python</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.6"</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="yaml"> <span class="na" style="color: #008080;">install</span><span class="pi">:</span> <span class="s" style="color: #d14;">python3 -m pip install twine</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="yaml"> <span class="na" style="color: #008080;">if</span><span class="pi">:</span> <span class="s" style="color: #d14;">tag IS present</span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="yaml"> <span class="na" style="color: #008080;">script</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="yaml"> <span class="pi">-</span> <span class="pi">|</span></span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="yaml"> <span class="s" style="color: #d14;">python3 setup.py sdist</span></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="yaml"> <span class="s" style="color: #d14;">python3 -m pip wheel -w dist/ .</span></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="yaml"> <span class="s" style="color: #d14;">ls -l dist/</span></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="yaml"> <span class="s" style="color: #d14;">python3 -m twine upload dist/xopen-*</span></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="yaml"></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">stage</span><span class="pi">:</span> <span class="s" style="color: #d14;">test</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="yaml"> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">flake8</span></span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="yaml"> <span class="na" style="color: #008080;">python</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.6"</span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="yaml"> <span class="na" style="color: #008080;">install</span><span class="pi">:</span> <span class="s" style="color: #d14;">python3 -m pip install flake8</span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="yaml"> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">flake8 src/ tests/</span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="yaml"></span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">stage</span><span class="pi">:</span> <span class="s" style="color: #d14;">test</span></span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="yaml"> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">mypy</span></span>
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57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="yaml"> <span class="na" style="color: #008080;">python</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.6"</span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="yaml"> <span class="na" style="color: #008080;">install</span><span class="pi">:</span> <span class="s" style="color: #d14;">python3 -m pip install mypy</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="yaml"> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">mypy src/</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="yaml"></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">stage</span><span class="pi">:</span> <span class="s" style="color: #d14;">test</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="yaml"> <span class="na" style="color: #008080;">name</span><span class="pi">:</span> <span class="s" style="color: #d14;">igzip</span></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="yaml"> <span class="na" style="color: #008080;">python</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">3.6"</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="yaml"> <span class="na" style="color: #008080;">install</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">sudo apt-get update && sudo apt-get install -y pigz isal</span></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">pip install --upgrade coverage codecov</span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">pip install .</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf"><strong>PKG-INFO</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 2.1</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: xopen</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">0.1</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">1.0</span></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: Open compressed files transparently</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/marcelm/xopen/</span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Marcel Martin</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,12 +38,21 @@ Description: .. image:: https://travis-ci.org/marcelm/xopen.svg?branch=master</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> available. For gzip compression levels 1 to 3,</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> `igzip <https://github.com/intel/isa-l/>`_ is used for an even greater speedup.</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> For use cases where using only the main thread is desired xopen can be used</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> with ``threads=0``. This will use `python-isal</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> <https://github.com/pycompression/python-isal>`_ (which binds isa-l) if</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> python-isal is installed (automatic on Linux systems, as it is a requirement).</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> For installation instructions for python-isal please</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> checkout the `python-isal homepage</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> <https://github.com/pycompression/python-isal>`_. If python-isal is not</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> available ``gzip.open`` is used.</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> This module has originally been developed as part of the `Cutadapt</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> tool <https://cutadapt.readthedocs.io/>`_ that is used in bioinformatics to</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> manipulate sequencing data. It has been in successful use within that software</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> for a few years.</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> ``xopen`` is compatible with Python versions 3.<span class="idiff left right">5</span> and later.</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> ``xopen`` is compatible with Python versions 3.<span class="idiff left right">6</span> and later.</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> Usage</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,6 +103,12 @@ Description: .. image:: https://travis-ci.org/marcelm/xopen.svg?branch=master</td>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> Changes</span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> -------</span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> v1.1.0</span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> ~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> * Python 3.5 support is dropped.</span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> * On Linux systems, `python-isal <https://github.com/pycompression/python-isal>`_</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> is now added as a requirement. This will speed up the reading of gzip files</span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> significantly when no external processes are used.</span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> </span>
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98
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> v1.0.0</span>
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99
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> ~~~~~~</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,5 +177,5 @@ Platform: UNKNOWN</td>
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext">Classifier: Development Status :: 5 - Production/Stable</span>
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext">Classifier: License :: OSI Approved :: MIT License</span>
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext">Classifier: Programming Language :: Python :: 3</span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext">Requires-Python: >=3.<span class="idiff left right">5</span></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext">Requires-Python: >=3.<span class="idiff left right">6</span></span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext">Provides-Extra: dev</span></pre>
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<li id="561b88e19de321ca62c7590bbb350765fb110905">
<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#561b88e19de321ca62c7590bbb350765fb110905"><strong>README.rst</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,12 +30,21 @@ when reading ``.gz`` files, so it is used both for reading and writing if it is</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">available. For gzip compression levels 1 to 3,</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">`igzip <https://github.com/intel/isa-l/>`_ is used for an even greater speedup.</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">For use cases where using only the main thread is desired xopen can be used</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">with ``threads=0``. This will use `python-isal</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"><https://github.com/pycompression/python-isal>`_ (which binds isa-l) if</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">python-isal is installed (automatic on Linux systems, as it is a requirement).</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">For installation instructions for python-isal please</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">checkout the `python-isal homepage</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"><https://github.com/pycompression/python-isal>`_. If python-isal is not</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">available ``gzip.open`` is used.</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext">This module has originally been developed as part of the `Cutadapt</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">tool <https://cutadapt.readthedocs.io/>`_ that is used in bioinformatics to</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext">manipulate sequencing data. It has been in successful use within that software</span>
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36
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext">for a few years.</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext">``xopen`` is compatible with Python versions 3.<span class="idiff left right">5</span> and later.</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">``xopen`` is compatible with Python versions 3.<span class="idiff left right">6</span> and later.</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext">Usage</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,6 +95,12 @@ If you also want to open S3 files, you may want to use that module instead.</td>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext">Changes</span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext">-------</span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext">v1.1.0</span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext">~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext">* Python 3.5 support is dropped.</span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext">* On Linux systems, `python-isal <https://github.com/pycompression/python-isal>`_</span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> is now added as a requirement. This will speed up the reading of gzip files</span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> significantly when no external processes are used.</span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext">v1.0.0</span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext">~~~~~~</span>
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<li id="8e2edce0d507e1297474f25c00cae94258db38d8">
<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,8 +19,9 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="python"> <span class="n" style="color: #333;">package_data</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">"xopen"</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">"py.typed"</span><span class="p">]},</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"> <span class="n" style="color: #333;">extras_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"> <span class="s" style="color: #d14;">'dev'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'pytest'</span><span class="p">],</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="python"> <span class="s" style="color: #d14;">':sys_platform=="linux" and python_implementation != "PyPy"'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'isal>=0.3.0'</span><span class="p">]</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python"> <span class="p">},</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="python"> <span class="n" style="color: #333;">python_requires</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>=3.<span class="idiff left right">5</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="python"> <span class="n" style="color: #333;">python_requires</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'>=3.<span class="idiff left right">6</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python"> <span class="n" style="color: #333;">classifiers</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="s" style="color: #d14;">"Development Status :: 5 - Production/Stable"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"> <span class="s" style="color: #d14;">"License :: OSI Approved :: MIT License"</span><span class="p">,</span></span>
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<li id="efbb1c831f4dccaf4947527ba3b19d46b8fce42c">
<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#efbb1c831f4dccaf4947527ba3b19d46b8fce42c"><strong>src/xopen.egg-info/PKG-INFO</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Metadata-Version: 2.1</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Name: xopen</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">0.1</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Version: 1.<span class="idiff left right">1.0</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Summary: Open compressed files transparently</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Home-page: https://github.com/marcelm/xopen/</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Author: Marcel Martin</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,12 +38,21 @@ Description: .. image:: https://travis-ci.org/marcelm/xopen.svg?branch=master</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> available. For gzip compression levels 1 to 3,</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> `igzip <https://github.com/intel/isa-l/>`_ is used for an even greater speedup.</span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> For use cases where using only the main thread is desired xopen can be used</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> with ``threads=0``. This will use `python-isal</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> <https://github.com/pycompression/python-isal>`_ (which binds isa-l) if</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> python-isal is installed (automatic on Linux systems, as it is a requirement).</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> For installation instructions for python-isal please</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> checkout the `python-isal homepage</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> <https://github.com/pycompression/python-isal>`_. If python-isal is not</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> available ``gzip.open`` is used.</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> This module has originally been developed as part of the `Cutadapt</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> tool <https://cutadapt.readthedocs.io/>`_ that is used in bioinformatics to</span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> manipulate sequencing data. It has been in successful use within that software</span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> for a few years.</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> ``xopen`` is compatible with Python versions 3.<span class="idiff left right">5</span> and later.</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> ``xopen`` is compatible with Python versions 3.<span class="idiff left right">6</span> and later.</span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> Usage</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -94,6 +103,12 @@ Description: .. image:: https://travis-ci.org/marcelm/xopen.svg?branch=master</td>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> Changes</span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> -------</span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> v1.1.0</span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> ~~~~~~</span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> * Python 3.5 support is dropped.</span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> * On Linux systems, `python-isal <https://github.com/pycompression/python-isal>`_</span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> is now added as a requirement. This will speed up the reading of gzip files</span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> significantly when no external processes are used.</span>
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> </span>
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98
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> v1.0.0</span>
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99
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> ~~~~~~</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -162,5 +177,5 @@ Platform: UNKNOWN</td>
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162
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext">Classifier: Development Status :: 5 - Production/Stable</span>
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<td class="diff-line-num old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
163
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext">Classifier: License :: OSI Approved :: MIT License</span>
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<td class="diff-line-num old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
164
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext">Classifier: Programming Language :: Python :: 3</span>
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<td class="diff-line-num old old_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext">Requires-Python: >=3.<span class="idiff left right">5</span></span>
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<td class="diff-line-num new old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext">Requires-Python: >=3.<span class="idiff left right">6</span></span>
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166
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext">Provides-Extra: dev</span></pre>
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<li id="130400ead814acc859b193dc3cbbf772c4033be6">
<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#130400ead814acc859b193dc3cbbf772c4033be6"><strong>src/xopen.egg-info/SOURCES.txt</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">.codecov.yml</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">.editorconfig</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">.gitignore</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">.travis.yml</span>
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5
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">LICENSE</span>
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6
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5
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">README.rst</span>
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7
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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">pyproject.toml</span>
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8
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">setup.cfg</span>
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9
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">setup.py</span>
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10
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">tox.ini</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">.github/workflows/ci.yml</span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">src/xopen/__init__.py</span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">src/xopen/_version.py</span>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">src/xopen/_version.pyi</span>
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<li id="6e4b43af27a8791950e7b2b103bd28759f29cab6">
<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#6e4b43af27a8791950e7b2b103bd28759f29cab6"><strong>src/xopen.egg-info/requires.txt</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">[:sys_platform=="linux" and python_implementation != "PyPy"]</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">isal>=0.3.0</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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2
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">[dev]</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">pytest</span></pre>
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<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#cd0c41236a43aa42f65b9818b06ef5809e2bc72b"><strong>src/xopen/__init__.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,6 +27,12 @@ try:</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"><span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">ImportError</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python"> <span class="n" style="color: #333;">lzma</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span> <span class="c1" style="color: #998; font-style: italic;"># type: ignore</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python"><span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="python"> <span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">isal</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">igzip</span><span class="p">,</span> <span class="n" style="color: #333;">isal_zlib</span> <span class="c1" style="color: #998; font-style: italic;"># type: ignore</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="python"><span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">ImportError</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="python"> <span class="n" style="color: #333;">igzip</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">isal_zlib</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">None</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"><span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">fcntl</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># fcntl.F_SETPIPE_SZ will be available in python 3.10.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -470,31 +476,47 @@ def _open_xz(filename, mode: str) -> IO:</td>
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<pre style="margin: 0;"> <span id="LC476" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">lzma</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">)</span></span>
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471
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477
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="python"></span>
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478
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_open_gz_external</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">,</span> <span class="n" style="color: #333;">threads</span><span class="p">):</span></span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'r'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">mode</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedIGzipReader</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">)</span></span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">OSError</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># No igzip installed or version does not support reading</span></span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># concatenated files.</span></span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedGzipReader</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">threads</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">threads</span><span class="p">)</span></span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedIGzipWriter</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">)</span></span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">OSError</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># No igzip installed or compression level higher than 3</span></span>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedGzipWriter</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">,</span></span>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="python"> <span class="n" style="color: #333;">threads</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">threads</span><span class="p">)</span></span>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="python"></span>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="python"></span>
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496
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<pre style="margin: 0;"> <span id="LC496" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_open_gz</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">,</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">,</span> <span class="n" style="color: #333;">threads</span><span class="p">):</span></span>
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497
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<pre style="margin: 0;"> <span id="LC497" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">threads</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span><span class="p">:</span></span>
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498
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<pre style="margin: 0;"> <span id="LC498" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'r'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">mode</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedIGzipReader</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">OSError</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># No igzip installed or version does not support reading</span></span>
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># concatenated files.</span></span>
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedGzipReader</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">threads</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">threads</span><span class="p">)</span></span>
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483
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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484
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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485
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedIGzipWriter</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">)</span></span>
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486
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">OSError</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">):</span></span>
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># No igzip installed or compression level higher than 3</span></span>
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488
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">PipedGzipWriter</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">,</span> <span class="n" style="color: #333;">threads</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">threads</span><span class="p">)</span></span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">_open_gz_external</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">,</span> <span class="n" style="color: #333;">threads</span><span class="p">)</span></span>
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489
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<pre style="margin: 0;"> <span id="LC500" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">OSError</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC501" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span> <span class="c1" style="color: #998; font-style: italic;"># We try without threads.</span></span>
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491
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<pre style="margin: 0;"> <span id="LC502" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC503" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="s" style="color: #d14;">'r'</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">mode</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">igzip</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">igzip</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC506" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">gzip</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="python"> <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>
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495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Override gzip.open's default of 9 for consistency with command-line gzip.</span></span>
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496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">gzip</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="python"> <span class="n" style="color: #333;">compresslevel</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">6</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compresslevel</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="python"></span>
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">igzip</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="python"> <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">igzip</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span></span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="python"> <span class="n" style="color: #333;">compresslevel</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">isal_zlib</span><span class="p">.</span><span class="n" style="color: #333;">ISAL_DEFAULT_COMPRESSION</span></span>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compresslevel</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">)</span></span>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="python"> <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">:</span></span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Compression level not supported, move to built-in gzip.</span></span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="python"> <span class="k" style="font-weight: 600;">pass</span></span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="python"></span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Override gzip.open's default of 9 for consistency with command-line gzip.</span></span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="python"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">gzip</span><span class="p">.</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">,</span> <span class="n" style="color: #333;">mode</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="python"> <span class="n" style="color: #333;">compresslevel</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">6</span> <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">compresslevel</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span> <span class="k" style="font-weight: 600;">else</span> <span class="n" style="color: #333;">compresslevel</span><span class="p">)</span></span>
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498
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520
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<pre style="margin: 0;"> <span id="LC520" class="line" lang="python"></span>
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499
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521
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<pre style="margin: 0;"> <span id="LC521" class="line" lang="python"></span>
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522
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<pre style="margin: 0;"> <span id="LC522" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">_detect_format_from_content</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">str</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-></span> <span class="n" style="color: #333;">Optional</span><span class="p">[</span><span class="nb" style="color: #0086b3;">str</span><span class="p">]:</span></span>
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<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#c4d1a3e7fce9843aafe06edbca23101b2b18507d"><strong>src/xopen/_version.py</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># coding: utf-8</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># file generated by setuptools_scm</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># don't change, don't track in version control</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'1.0.1'</span></span></pre>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="python"><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">'1.1.0'</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="python"><span class="n" style="color: #333;">version_tuple</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">)</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#2ebeeaa3dbc2bfbb1271c926287d569231eedf02"><strong>tests/test_xopen.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -431,7 +431,7 @@ def test_concatenated_gzip_function():</td>
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<pre style="margin: 0;"> <span id="LC431" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC432" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">pytest</span><span class="p">.</span><span class="n" style="color: #333;">mark</span><span class="p">.</span><span class="n" style="color: #333;">skipif</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="python"> <span class="ow" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">hasattr</span><span class="p">(</span><span class="n" style="color: #333;">fcntl</span><span class="p">,</span> <span class="s" style="color: #d14;">"F_GETPIPE_SZ"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;"><span class="idiff left">and</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_MAX_PIPE_SIZE</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">is</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff right">not</span></span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="python"> <span class="ow" style="font-weight: 600;">not</span> <span class="nb" style="color: #0086b3;">hasattr</span><span class="p">(</span><span class="n" style="color: #333;">fcntl</span><span class="p">,</span> <span class="s" style="color: #d14;">"F_GETPIPE_SZ"</span><span class="p">)</span> <span class="ow" style="font-weight: 600;"><span class="idiff left">or</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">_MAX_PIPE_SIZE</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff right">is</span></span> <span class="bp" style="color: #999;">None</span><span class="p">,</span></span>
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435
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<pre style="margin: 0;"> <span id="LC435" class="line" lang="python"> <span class="n" style="color: #333;">reason</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Pipe size modifications not available on this platform."</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC436" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_pipesize_changed</span><span class="p">(</span><span class="n" style="color: #333;">tmpdir</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC437" class="line" lang="python"> <span class="n" style="color: #333;">path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Path</span><span class="p">(</span><span class="nb" style="color: #0086b3;">str</span><span class="p">(</span><span class="n" style="color: #333;">tmpdir</span><span class="p">),</span> <span class="s" style="color: #d14;">"hello.gz"</span><span class="p">)</span></span>
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<a href="https://salsa.debian.org/med-team/python-xopen/-/commit/a86084cc094e86ce8069045feeb236d937ef2b45#61be067c7cf3bdbf8a6b021a2b5167eb30612d0c"><strong>tox.ini</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="ini"><span class="nn" style="color: #555;">[tox]</span></span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="ini"><span class="py">envlist</span> <span class="p">=</span> <span class="s" style="color: #d14;">flake8,mypy,py3<span class="idiff left right">5,py3</span>6,py37,py38,py39,pypy3</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="ini"><span class="py">envlist</span> <span class="p">=</span> <span class="s" style="color: #d14;">flake8,mypy,py36,py37,py38,py39,pypy3</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="ini"></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="ini"><span class="nn" style="color: #555;">[testenv]</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="ini"><span class="py">deps</span> <span class="p">=</span> <span class="s" style="color: #d14;">pytest</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="ini"><span class="py">deps</span> <span class="p">=</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">pytest</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">coverage</span></span>
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6
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="ini"><span class="py">setenv</span> <span class="p">=</span> <span class="s" style="color: #d14;">PYTHONDEVMODE = 1</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="ini"><span class="py">commands</span> <span class="p">=</span> <span class="s" style="color: #d14;">pytest --doctest-modules --pyargs src/xopen tests</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="ini"><span class="py">commands</span> <span class="p">=</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">coverage</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">run</span> <span class="py">--concurrency</span><span class="p">=</span><span class="s" style="color: #d14;">multiprocessing -m pytest --doctest-modules src/xopen/ tests/</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">coverage</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">combine</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">coverage</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">report</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">coverage</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">xml</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="ini"></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="ini"><span class="nn" style="color: #555;">[testenv:isal]</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="ini"><span class="py">deps</span> <span class="p">=</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">pytest</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">coverage</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="ini"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">isal</span></span>
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8
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="ini"></span>
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9
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="ini"><span class="nn" style="color: #555;">[testenv:flake8]</span></span>
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10
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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
22
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="ini"><span class="py">basepython</span> <span class="p">=</span> <span class="s" style="color: #d14;">python3.6</span></span>
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11
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="ini"><span class="py">deps</span> <span class="p">=</span> <span class="s" style="color: #d14;">flake8</span></span>
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12
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24
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="ini"><span class="py">commands</span> <span class="p">=</span> <span class="s" style="color: #d14;">flake8 src/ tests/</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="ini"><span class="py">skip_install</span> <span class="p">=</span> <span class="s" style="color: #d14;">true</span></span>
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13
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
26
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="ini"></span>
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14
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
27
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="ini"><span class="nn" style="color: #555;">[testenv:mypy]</span></span>
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15
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
28
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="ini"><span class="py">basepython</span> <span class="p">=</span> <span class="s" style="color: #d14;">python3.6</span></span>
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16
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<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
29
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="ini"><span class="py">deps</span> <span class="p">=</span> <span class="s" style="color: #d14;">mypy</span></span>
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17
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<td class="diff-line-num new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="ini"><span class="py">commands</span> <span class="p">=</span> <span class="s" style="color: #d14;">mypy src/</span></span>
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="ini"><span class="py">skip_install</span> <span class="p">=</span> <span class="s" style="color: #d14;">true</span></span>
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18
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<td class="diff-line-num new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="ini"></span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="ini"><span class="nn" style="color: #555;">[flake8]</span></span>
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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<td class="diff-line-num new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
34
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="ini"><span class="py">max-line-length</span> <span class="p">=</span> <span class="s" style="color: #d14;">99</span></span>
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