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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/386e4383b8ac59f0e2f63da9a385411d0685d798">386e4383</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T11:32:40+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/c062ae49a8fc6875368615f128454dc1365366b1">c062ae49</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T11:32:41+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.2.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/04cd1fb258f0daaca8a69d61aa371117967f928e">04cd1fb2</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T11:32:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/5.2.0'
Update to upstream version '5.2.0'
with Debian dir 4f9a2ad068fefeaedb37d3b1a1c536517691232e</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/87838f41ffdfe289e545c00ade7990ab34885f86">87838f41</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T11:32:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/b67c1d8088c63c4e892b68ce1127974fa2f112a6">b67c1d80</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T11:39:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Freshen patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/44d39c5a72bc30027b5205e087fa1b7eea6635fe">44d39c5a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T11:48:16+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update some copyright info
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/efc20eda7962bd21ef8773565aca80c5e43adced">efc20eda</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T12:53:10+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">The python module "wdlparse" is not yet packaged for Debian; disable toil-wdl-runner in this release.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/ac8f96707923f45e8d98d7b480d4c71ecdd89813">ac8f9670</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T12:54:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/control: update the minimum version of cwltool required
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/toil/-/commit/f63eb972952f6be44b41d31fdad93363a28baa8b">f63eb972</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-01-24T12:54:52+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#b8baf23d7ed7f2b79b86aeb041867428fb196428">
<span class="new-file">
+
.github/PULL_REQUEST_TEMPLATE.md
</span>
</a>
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<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#a62b8652a1f9ea532d82804117f6bbdf51425ee7">
common.mk
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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</li>
<li class="file-stats">
<a href="#43bce5830afffd9cb2acc8dc5edc5294f813bf08">
debian/patches/debianize_docs
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</li>
<li class="file-stats">
<a href="#e94fbb8719c4a68a67df894f2683205bb9914852">
debian/patches/no_galaxy_lib
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<li class="file-stats">
<a href="#162e41e7c3dcfdb5813c4718e3f8503d4861a8ba">
<span class="deleted-file">
−
debian/patches/remove-pathlib2-dep
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</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#bbcb48e2be151813ceeaaec7eadcaf824b49c1c6">
debian/patches/setting_version.patch
</a>
</li>
<li class="file-stats">
<a href="#c1fb0e9c942747a583cd8adc2707dd0cb1d97505">
debian/patches/soften-mesos-deps
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<li class="file-stats">
<a href="#cb805f74cef9b2dafa0758f976c0bcadda0b7dde">
debian/patches/version.patch
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</li>
<li class="file-stats">
<a href="#a4b8bd6a7a72ff6720185f41df4f162bdc674cb6">
<span class="new-file">
+
debian/patches/wdlparse_not_available
</span>
</a>
</li>
<li class="file-stats">
<a href="#e2b1208a0e749c8deae704fab4193ed3af3060cd">
debian/tests/smoke-test
</a>
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<li class="file-stats">
<a href="#734cb112ea615891b9ef15d07ae7bc1dee10abc3">
docker/Dockerfile.py
</a>
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<li class="file-stats">
<a href="#f99c72d2aacbf31ded1872c66de3f988dced0301">
docs/appendices/environment_vars.rst
</a>
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<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#abd8589b4d5ee2ea66ee95d8caf4e8759ffb9ce0">
docs/contributing/contributing.rst
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<li class="file-stats">
<a href="#f6fd38662d0696a7f4554040b8fec01f4f63546b">
docs/gettingStarted/quickStart.rst
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<li class="file-stats">
<a href="#32be2c2e3690a70b96e3263f2bb4aa0ce226602a">
docs/running/cliOptions.rst
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<li class="file-stats">
<a href="#8e4430ed91538c989bbba29d0f6541cce24a88d1">
docs/running/cloud/amazon.rst
</a>
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<li class="file-stats">
<a href="#9d336859ebc50ce12f946e32de94343f00be9ebb">
docs/running/cloud/clusterUtils.rst
</a>
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<li class="file-stats">
<a href="#2a53c4a04324247c2fb07f240c51435da9975175">
docs/running/cloud/gce.rst
</a>
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<li class="file-stats">
<a href="#70b5c097c4e102be40b0cbc3b0321bdec8cb6e10">
docs/running/cloud/kubernetes.rst
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<li class="file-stats">
<a href="#54aa56c0c0e2cd49ea7a6083879baecb55a418b1">
docs/running/cwl.rst
</a>
</li>
<li class="file-stats">
<a href="#2bc4216ad4aeb71ac42dace0d0de50ccaaca3718">
docs/running/debugging.rst
</a>
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<li class="file-stats">
<a href="#dac3c500fb7199030518b77e687a47a830e4074d">
docs/running/introduction.rst
</a>
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</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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