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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b3999ed2c5c63957b2a408690d2bc43054044c9c">b3999ed2</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-01-25T13:42:19+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/b3999ed2c5c63957b2a408690d2bc43054044c9c#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 25 Jan 2021 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 25 Jan 2021 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">84</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">7</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">79</span> | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">6</span> | {practice,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 53 | {laboratory,imaging,his,covid-19,practice,oncology} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> gdcm | 35 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dicom3tools | 29 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> amide | 28 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> htsjdk | 26 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dicomscope | 25 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> gdcm | 19 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 24 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> nifticlib | 19 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> odin | 17 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> ngs-sdk | 15 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> gdcm | 18 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> ngs-sdk | 16 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> odin | 16 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> plastimatch | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> dicomnifti | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> gdcm | 14 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> gnumed-server | 14 | {practice,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">invesalius | 13 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">gdcm | 13 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> minc-tools | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> insighttoolkit4 | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> invesalius | 11 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> king | 11 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> mia | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom | 10</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> <span class="idiff left right">mia | 9</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> nifti2dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> adun.app | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -103,7 +103,6 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> dicompyler | 3 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> elastix | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> estscan | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> fastml | 3 | {bio} | </span>
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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108
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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109
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> jmodeltest | 3 | {bio-phylogeny,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -122,6 +121,7 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000</td>
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122
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> busco | 2 | {bio,covid-19} | </span>
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123
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> clonalframeml | 2 | {bio,covid-19} | </span>
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> delly | 2 | {covid-19,bio} | </span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> fastml | 2 | {bio} | </span>
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125
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> fsm-lite | 2 | {bio} | </span>
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> hinge | 2 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -164,7 +164,6 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000</td>
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> libseqlib | 1 | {bio-dev} | </span>
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165
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> libstatgen | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> pbseqlib | 1 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -205,8 +204,10 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000</td>
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205
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> mia | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> milib | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext"> nanosv | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> opencfu | 0 | {laboratory} | </span>
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext"> openslide | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -217,8 +218,8 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000</td>
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218
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="plaintext"> pique | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> pplacer | 0 | {covid-19,bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> python-bcbio-gff | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> sambamba | 0 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -239,7 +240,6 @@ Last-Update: Mon, 25 Jan 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> vtk-dicom | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> yanagiba | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC242" class="line" lang="plaintext"> mssstest | -1 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="plaintext"> orthanc-gdcm | -1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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