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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/cyvcf2">Debian Med / cyvcf2</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/de5a4eededf2ff5e1f3027c5b165fd6837e37fa3">de5a4eed</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-01-26T16:12:38+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Pull Upstream PR to fix ppc64el build failures (Closes:#956675)
</pre>
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<strong><a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/461002ec20796a52081bd5a4e3aa717e4dbf0d8a">461002ec</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-01-26T16:13:28+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#8e880093d7fbdb5aef97f5dc6f115b34fc09c47d">
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+
debian/patches/188.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/cyvcf2/-/compare/2dc9352a689ffcca8d46d989ed072b117cea266b...461002ec20796a52081bd5a4e3aa717e4dbf0d8a#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">cyvcf2 (0.30.4-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Pull Upstream PR to fix ppc64el build</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> (Closes:#956675)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Nilesh Patra <npatra974@gmail.com> Tue, 26 Jan 2021 16:12:46 +0530</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">cyvcf2 (0.30.4-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Team upload.</span>
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<li id="8e880093d7fbdb5aef97f5dc6f115b34fc09c47d">
<a href="https://salsa.debian.org/med-team/cyvcf2/-/compare/2dc9352a689ffcca8d46d989ed072b117cea266b...461002ec20796a52081bd5a4e3aa717e4dbf0d8a#8e880093d7fbdb5aef97f5dc6f115b34fc09c47d"><strong>debian/patches/188.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From de01c8521677dacb018f2982518a948bf15571d1 Mon Sep 17 00:00:00 2001</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">From: Nils Homer <nh13@users.noreply.github.com></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Date: Wed, 20 Jan 2021 23:28:43 -0800</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Subject: [PATCH] Fix https://github.com/brentp/cyvcf2/issues/182</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> cyvcf2/tests/test_reader.py | 9 +++++++--</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> 1 file changed, 7 insertions(+), 2 deletions(-)</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff">--- a/cyvcf2/tests/test_reader.py</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/cyvcf2/tests/test_reader.py</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="p">@@ -333,7 +333,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> w.write_record(rec)</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> w.close()</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- v = next(VCF(f))</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fh = VCF(f)</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ v = next(fh)</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fh.close()</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> assert v.INFO["myflag"] is True, dict(v.INFO)</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> f = tempfile.mktemp(suffix=".vcf")</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="p">@@ -341,7 +343,10 @@</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> w = Writer(f, vcf)</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> rec.INFO["myflag"] = False</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> w.write_record(rec)</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- v = next(VCF(f))</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ w.close()</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fh = VCF(f)</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ v = next(fh)</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fh.close()</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> assert_raises(KeyError, v.INFO.__getitem__, "myflag")</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> </span></pre>
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<a href="https://salsa.debian.org/med-team/cyvcf2/-/compare/2dc9352a689ffcca8d46d989ed072b117cea266b...461002ec20796a52081bd5a4e3aa717e4dbf0d8a#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">add_htslib_link_dependency.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">#spelling</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">188.patch</span></pre>
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