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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/1c20dafa2114b4a1649475df5bbb3bd24a22a18c">1c20dafa</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-01-26T13:53:56+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.5</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/17c33c5a0c1b0398a9c64af61c803201f741c36b">17c33c5a</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-01-26T13:54:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.5'
Update to upstream version '1.2.5'
with Debian dir 170647d8542f5cc09d1688feb0947f06d4cb0f01</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/bbe5fb17531f381785724476861b81cf9d2eba99">bbe5fb17</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-01-26T14:22:57+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
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<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#059a93c69080af2f6054c5324203b7af73cc5b83">
bcbio/bam/__init__.py
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<li class="file-stats">
<a href="#ffb2e540c7c7301c64659d69a0b5cbc3e9da66b1">
bcbio/bam/cram.py
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<li class="file-stats">
<a href="#92799c57074000fce647627900cf88b09d79a6f8">
bcbio/chipseq/antibodies.py
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<li class="file-stats">
<a href="#e058999dc6b36492007fce47afb7a70ca8b25e3d">
bcbio/chipseq/atac.py
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<li class="file-stats">
<a href="#4eabad8cbe351e3e3d7466ee25d9d970b164368a">
bcbio/chipseq/macs2.py
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<li class="file-stats">
<a href="#fbfb96675c481efdacfedf0214b473e7d623d79c">
bcbio/chipseq/peaks.py
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<li class="file-stats">
<a href="#661d5e833916ddd389f1203452fb5ebc607952bf">
<span class="new-file">
+
bcbio/dragen/__init__.py
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<li class="file-stats">
<a href="#6cfbdb297f478b988ce7f28ee6c013bc814b7ed6">
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bcbio/dragen/dragen.py
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<li class="file-stats">
<a href="#399d062423d7dfda6c87b58e34ead968ccd6189c">
bcbio/heterogeneity/loh.py
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<li class="file-stats">
<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
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<li class="file-stats">
<a href="#f5ccb8a739885f7f0b20c8075bf02a335bbb6d30">
bcbio/ngsalign/alignprep.py
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<li class="file-stats">
<a href="#5eae78d8d65ceec04aed346c7bfecf92d6f8df0c">
bcbio/ngsalign/postalign.py
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<li class="file-stats">
<a href="#3bc78861325eafbcc6318a5fe975950a26142070">
bcbio/pipeline/datadict.py
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<li class="file-stats">
<a href="#4e00cae7dfe5de6a3132be3dd463a7dfa5c8f15b">
bcbio/pipeline/genome.py
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<li class="file-stats">
<a href="#6b0954b64bb7025f3d13cbef18622daa684dbe1a">
bcbio/pipeline/main.py
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<li class="file-stats">
<a href="#28669a7ddccdf8ac47c577727840379bba16c871">
bcbio/pipeline/rnaseq.py
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<li class="file-stats">
<a href="#6a5842dd9e3c5daac8e6d62a34e4d60ab86b78bf">
bcbio/pipeline/run_info.py
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<li class="file-stats">
<a href="#fac91f905233560f253b7063f3b6889aeca3af62">
bcbio/pipeline/sample.py
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<li class="file-stats">
<a href="#3995319f2ef2f2067208249dae60a59b92f47661">
bcbio/rnaseq/count.py
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<li class="file-stats">
<a href="#3ece592962c93e563a8e8c319da752278663348e">
bcbio/rnaseq/featureCounts.py
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<li class="file-stats">
<a href="#0287de35830dbdcc13313ba0df6b5ba5e4cb9ab7">
bcbio/rnaseq/salmon.py
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<a href="#e3ea67dca50d512c0f0c7f77a55823ceb869dd70">
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bcbio/scripts/R/bcbio2se.R
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<li class="file-stats">
<a href="#d986654ec3f1fb4e6ec697d2c4a21477ca7b371a">
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bcbio/scripts/R/se2qc.Rmd
</span>
</a>
</li>
<li class="file-stats">
<a href="#18ff23ed3dfd4f4fd5011ffc33eb20d761c3b199">
bcbio/structural/__init__.py
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<li class="file-stats">
<a href="#192709bde29a562fd954977210cff645bfbfe383">
bcbio/structural/delly.py
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<li class="file-stats">
<a href="#7d53800404c69ee56b2303a3da8e615968f726ac">
bcbio/structural/lumpy.py
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</li>
<li class="file-stats">
<a href="#2cdd8023262242abfabb1ee24e7fd1e1cbb2562a">
bcbio/structural/purecn.py
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</ul>
<h5>The diff was not included because it is too large.</h5>
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<p style="font-size: small; color: #666;">
—
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<a href="https://salsa.debian.org/med-team/bcbio/-/compare/a48982aa7bca71129decc931487c09ef30496119...bbe5fb17531f381785724476861b81cf9d2eba99">View it on GitLab</a>.
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