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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/edtsurf">Debian Med / edtsurf</a>
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<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/edtsurf/-/commit/f84c5567ffacd3b14c02c7aa8aad486640598bf8">f84c5567</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2021-01-28T16:46:20+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build on i386 again
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/edtsurf/-/commit/60a7fb33d741b687ea8879d9d8da43e558a67abb">60a7fb33</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2021-01-28T16:50:15+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/edtsurf/-/commit/05188c47ab17fab0ba2ec9428483bf77fcdcf13e">05188c47</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2021-01-28T16:50:25+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/edtsurf/-/compare/5d87ff2557379f87b19f5fdcaaa73756d06a9325...05188c47ab17fab0ba2ec9428483bf77fcdcf13e#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">edtsurf (0.2009-10) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * debian/rules: for i386 compile with -ffloat-store. Closes: #980441</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debian/test/run-unit-test: run all tests on i386</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Standards-Version: 4.5.1 (routine-update)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Thu, 28 Jan 2021 16:50:25 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">edtsurf (0.2009-9) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Exclude i386 from supported architectures since it fails even the</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/edtsurf/-/compare/5d87ff2557379f87b19f5fdcaaa73756d06a9325...05188c47ab17fab0ba2ec9428483bf77fcdcf13e#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,14 +6,15 @@ Uploaders: Steffen Moeller <moeller@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13)</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/edtsurf</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/edtsurf.git</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Homepage: https://zhanglab.ccmb.med.umich.edu/EDTSurf/</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Package: edtsurf</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Architecture: any-amd64 arm64 armhf armel mips mips64el mipsel ppc64el s390x alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 x32</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">#Architecture: any-amd64 arm64 armhf armel mips mips64el mipsel ppc64el s390x alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 x32</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Suggests: meshlab</span>
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<a href="https://salsa.debian.org/med-team/edtsurf/-/compare/5d87ff2557379f87b19f5fdcaaa73756d06a9325...05188c47ab17fab0ba2ec9428483bf77fcdcf13e#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,6 +4,10 @@</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># Uncomment this to turn on verbose mode.</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;">#export DH_VERBOSE=1</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="make"><span class="k" style="font-weight: 600;">ifneq</span> <span class="nv" style="color: #008080;">(,$(filter $(DEB_HOST_ARCH), i386))</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">DEB_CXXFLAGS_MAINT_APPEND</span> <span class="o" style="font-weight: 600;">+=</span> <span class="nt" style="color: #000080;">-ffloat-store</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="make"><span class="k" style="font-weight: 600;">endif</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">DEB_BUILD_MAINT_OPTIONS</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">hardening</span><span class="o" style="font-weight: 600;">=</span>+all</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="make"><span class="nl">%</span><span class="o" style="font-weight: 600;">:</span></span>
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<a href="https://salsa.debian.org/med-team/edtsurf/-/compare/5d87ff2557379f87b19f5fdcaaa73756d06a9325...05188c47ab17fab0ba2ec9428483bf77fcdcf13e#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,21 +18,16 @@ ls -R</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd </span>data</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span>dpkg-architecture <span class="nt" style="color: #000080;">-qDEB_HOST_ARCH</span><span class="si" style="color: #d14;">)</span> <span class="o" style="font-weight: 600;">=</span> i386 <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"This test will timeout on i386 (see bug #974555) so do not run it here."</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[93m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mTest 1</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"> EDTSurf <span class="nt" style="color: #000080;">-i</span> 4we2.pdb</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"5a8f743a66963e9939773cce4dd68063 4we2-cav.pdb"</span> <span class="o" style="font-weight: 600;">></span> checksums</span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"1e12bc9a1180027990d7b16497af051b 4we2.ply"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums</span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[92m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mPassed</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span></span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[93m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mTest 1</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell">EDTSurf <span class="nt" style="color: #000080;">-i</span> 4we2.pdb</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"5a8f743a66963e9939773cce4dd68063 4we2-cav.pdb"</span> <span class="o" style="font-weight: 600;">></span> checksums</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"1e12bc9a1180027990d7b16497af051b 4we2.ply"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"><span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[92m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mPassed</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span></span>
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34
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># This test seems to make the less effort computing time wise so it should be possible on all architectures</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[93m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mTest 2</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="shell">EDTSurf <span class="nt" style="color: #000080;">-i</span> 4we2.pdb <span class="nt" style="color: #000080;">-t</span> 2 <span class="nt" style="color: #000080;">-o</span> 4we2-vcmc-ms</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="shell"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -43,27 +38,23 @@ md5sum --check checksums</td>
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[92m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mPassed</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span></span>
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45
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40
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="si" style="color: #d14;">$(</span>dpkg-architecture <span class="nt" style="color: #000080;">-qDEB_HOST_ARCH</span><span class="si" style="color: #d14;">)</span> <span class="o" style="font-weight: 600;">=</span> i386 <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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47
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"This test will timeout on i386 (see bug #974555) so do not run it here."</span></span>
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48
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[93m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mTest 3</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="shell"> EDTSurf <span class="nt" style="color: #000080;">-i</span> 4we2.pdb <span class="nt" style="color: #000080;">-s</span> 1 <span class="nt" style="color: #000080;">-t</span> 1 <span class="nt" style="color: #000080;">-o</span> 4we2-mc-vws</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[93m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mTest 3</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="shell">EDTSurf <span class="nt" style="color: #000080;">-i</span> 4we2.pdb <span class="nt" style="color: #000080;">-s</span> 1 <span class="nt" style="color: #000080;">-t</span> 1 <span class="nt" style="color: #000080;">-o</span> 4we2-mc-vws</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"6c58df9e481d7acc476ac49b05ccf71a 4we2-mc-vws-cav.pdb"</span> <span class="o" style="font-weight: 600;">></span> checksums</span>
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53
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"3fcf6ee03320d65165f6b69829184523 4we2-mc-vws.ply"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"6c58df9e481d7acc476ac49b05ccf71a 4we2-mc-vws-cav.pdb"</span> <span class="o" style="font-weight: 600;">></span> checksums</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"3fcf6ee03320d65165f6b69829184523 4we2-mc-vws.ply"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="shell"><span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums</span>
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55
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47
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="shell"></span>
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56
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[92m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mPassed</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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57
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<td class="diff-line-num new_line old" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">echo</span></span>
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<td class="diff-line-num new new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[92m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mPassed</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span></span>
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58
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50
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="shell"></span>
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59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="shell"><span class="nb" style="color: #0086b3;"><span class="idiff left right"> </span>echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[93m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mTest 4</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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60
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<td class="diff-line-num new_line old" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="shell"><span class="idiff left right"> </span>EDTSurf <span class="nt" style="color: #000080;">-i</span> 4we2.pdb <span class="nt" style="color: #000080;">-s</span> 2 <span class="nt" style="color: #000080;">-t</span> 2 <span class="nt" style="color: #000080;">-c</span> 3 <span class="nt" style="color: #000080;">-o</span> 4we2-sas-vcmc-chain</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[93m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mTest 4</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="shell">EDTSurf <span class="nt" style="color: #000080;">-i</span> 4we2.pdb <span class="nt" style="color: #000080;">-s</span> 2 <span class="nt" style="color: #000080;">-t</span> 2 <span class="nt" style="color: #000080;">-c</span> 3 <span class="nt" style="color: #000080;">-o</span> 4we2-sas-vcmc-chain</span>
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61
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53
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="shell"></span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"e53d8f051ab37ddb2e8ea7f91b576046 4we2-sas-vcmc-chain.asa"</span> <span class="o" style="font-weight: 600;">></span> checksums</span>
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63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"a5c9f8506b7a19598abdd4d723b659d8 4we2-sas-vcmc-chain-cav.pdb"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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64
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"840499d9781b146e0144fdb597c73a8e 4we2-sas-vcmc-chain.ply"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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65
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="shell"><span class="idiff left right"> </span><span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"e53d8f051ab37ddb2e8ea7f91b576046 4we2-sas-vcmc-chain.asa"</span> <span class="o" style="font-weight: 600;">></span> checksums</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"a5c9f8506b7a19598abdd4d723b659d8 4we2-sas-vcmc-chain-cav.pdb"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"840499d9781b146e0144fdb597c73a8e 4we2-sas-vcmc-chain.ply"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="shell"><span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums</span>
</pre>
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66
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58
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="shell"></span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[92m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mPassed</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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68
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span></span>
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<td class="diff-line-num old old_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
69
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span></pre>
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<td class="diff-line-num new old_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[92m</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[1mPassed</span><span class="se" style="color: #d14;">\e</span><span class="s2" style="color: #d14;">[0m"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span></span></pre>
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