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<h3>
Étienne Mollier pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-cutadapt">Debian Med / python-cutadapt</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/d1b911b35e9c36888ea3105cb630d7f9e34b3ac3">d1b911b3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T00:35:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add build_flags.patch to propagate build flags
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/b761984f31d09027b13628776ee5446fef8e0acf">b761984f</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T00:36:12+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: export -ffloat-store for i386
DEB_* variables are also exported befor inclusion of dpkg-buildflags,
so that their effects are taken into account.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/25804ac3d0849958b234888f3e9942daf0668034">25804ac3</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T00:45:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">improved d/rules clean target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/b0e4c5acd8a787266ce2242504ada2b44288b555">b0e4c5ac</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T00:45:43+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/ea7c72634f449a2f17665e4fb49b2c8f2d40e50f">ea7c7263</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T11:24:36+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Revert "add build_flags.patch to propagate build flags"
This reverts commit d1b911b35e9c36888ea3105cb630d7f9e34b3ac3.
Simply reorganizing the variables exports in debian/rules allows one
to get the expected behavior when using the DEB_* settings.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/7ce1c481002438f1d2c6cc393fd0e9b01b6b9b6c">7ce1c481</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T11:29:58+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add skip-setuptools-scm.patch
debian/rules clean hogs while setuptools-scm attempts to access the
Internet to fetch something. This patch removes the component from
the setup.py.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/49753ef048078ed2d0467ebc6652e08a5d0d5d60">49753ef0</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T11:35:18+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">skip-setuptools-scm.patch dep3 header
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/e33825e15cd1c217e6bd19b6b238998d88680a6c">e33825e1</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T11:37:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">update changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/-/commit/12f62870b7b25595ea5efe978ebc1a336b2ffe07">12f62870</a></strong>
<div>
<span>by Étienne Mollier</span>
<i>at 2021-01-30T11:39:13+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#2fcd9d09a25da4724f40c150f7d6228369891931">
<span class="new-file">
+
debian/patches/skip-setuptools-scm.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-cutadapt/-/compare/4dbb707bd735b6e90266e9e50c304b010c597e32...12f62870b7b25595ea5efe978ebc1a336b2ffe07#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-cutadapt (3.2-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Build i386 architecture with -ffloat-store to address failing tests.</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Add skip-setuptools-scm.patch to avoid accessing network resources during</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> builds and cleanup, and added supplement to the d/rules clean target.</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Étienne Mollier <etienne.mollier@mailoo.org> Sat, 30 Jan 2021 11:38:08 +0100</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">python-cutadapt (3.2-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * New upstream version</span>
</pre>
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<br>
</li>
<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/python-cutadapt/-/compare/4dbb707bd735b6e90266e9e50c304b010c597e32...12f62870b7b25595ea5efe978ebc1a336b2ffe07#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">xfail_cutadapt_executable_test.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">skip-setuptools-scm.patch</span></pre>
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<li id="2fcd9d09a25da4724f40c150f7d6228369891931">
<a href="https://salsa.debian.org/med-team/python-cutadapt/-/compare/4dbb707bd735b6e90266e9e50c304b010c597e32...12f62870b7b25595ea5efe978ebc1a336b2ffe07#2fcd9d09a25da4724f40c150f7d6228369891931"><strong>debian/patches/skip-setuptools-scm.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: skip setuptools-scm</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> The setuptools-scm tries to access to ressources on the network. This patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> removes the component off the setup.py</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">Author: Étienne Mollier <etienne.mollier@mailoo.org></span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Forwarded: not-needed</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">Last-Update: 2021-01-30</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-cutadapt.orig/setup.py</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-cutadapt/setup.py</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">@@ -85,7 +85,6 @@</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> setup(</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> name='cutadapt',</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- setup_requires=['setuptools_scm'], # Support pip versions that don't know about pyproject.toml</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> use_scm_version={'write_to': 'src/cutadapt/_version.py'},</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> author='Marcel Martin',</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> author_email='marcel.martin@scilifelab.se',</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/python-cutadapt/-/compare/4dbb707bd735b6e90266e9e50c304b010c597e32...12f62870b7b25595ea5efe978ebc1a336b2ffe07#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,18 +3,15 @@</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"># output every command that modifies files on the build system.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">#export DH_VERBOSE = 1</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">ifneq (,$(filter $(DEB_BUILD_ARCH),i386))</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">export DEB_CFLAGS_MAINT_APPEND += -ffloat-store</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"># see EXAMPLES in dpkg-buildflags(1) and read /usr/share/dpkg/*</span>
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7
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">DPKG_EXPORT_BUILDFLAGS = 1</span>
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8
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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9
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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10
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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11
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"></span>
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12
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<td class="diff-line-num new_line old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"># see ENVIRONMENT in dpkg-buildflags(1)</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"># package maintainers to append CFLAGS</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">#export DEB_CFLAGS_MAINT_APPEND = -Wall -pedantic</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"># package maintainers to append LDFLAGS</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed</span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"></span>
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18
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">export PYBUILD_NAME=cutadapt</span>
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19
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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20
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">%:</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,5 +31,6 @@ override_dh_auto_clean:</td>
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34
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> dh_auto_clean</span>
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35
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> rm -rf src/cutadapt.egg-info/ .pytest_cache</span>
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36
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> rm -f src/cutadapt/_version.py</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> rm -rf .eggs</span>
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37
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35
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> # cython-generated files</span>
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38
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36
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> rm -f src/cutadapt/_align.c src/cutadapt/qualtrim.c</span></pre>
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