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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/metastudent">Debian Med / metastudent</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/metastudent/-/commit/81b541e8f2fcd71da97ae9aba408a4056372c383">81b541e8</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-02-01T14:08:36+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not ask for installation of pp-popularity-contest
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
</a>
</li>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/metastudent/-/commit/81b541e8f2fcd71da97ae9aba408a4056372c383#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">metastudent (2.0.1-9) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Do not ask for installation of pp-popularity-contest</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Mon, 01 Feb 2021 14:05:36 +0100</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">metastudent (2.0.1-8) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> * Team upload.</span>
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<li id="555c85016bd79aa8bbb523506af81b69d9c69534">
<a href="https://salsa.debian.org/med-team/metastudent/-/commit/81b541e8f2fcd71da97ae9aba408a4056372c383#555c85016bd79aa8bbb523506af81b69d9c69534"><strong>debian/patches/2to3.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,11 +5,9 @@ Bug-Debian: https://bugs.debian.org/937017</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="p">Last-Update: 2019-09-17</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff">Index: metastudent/metastudent</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudent 2019-09-17 01:14:50.567566834 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudent 2019-09-17 01:14:50.555566892 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="p">@@ -25,701 +25,756 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">--- a/metastudent</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudent</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">@@ -25,701 +25,753 @@</span> import os</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> from shutil import copy2, rmtree</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> import random</span>
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15
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> import math</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1285,9 +1283,6 @@ Index: metastudent/metastudent</td>
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1285
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1283
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<pre style="margin: 0;"> <span id="LC1283" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ metastudentPkgPath = getPkgPath()</span></span>
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<td class="diff-line-num old_line" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1286
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1284
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<pre style="margin: 0;"> <span id="LC1284" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ dataPkgPath = os.path.join(sys.prefix, "share", "metastudent-data")</span></span>
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1287
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1285
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<pre style="margin: 0;"> <span id="LC1285" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1288
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<td class="diff-line-num new_line old" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1288" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if subprocess.getstatusoutput('pp_popcon_cnt -p metastudent')[0] != 0:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1289
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<td class="diff-line-num new_line old" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1289" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ print("The Rost Lab recommends you install the pp-popularity-contest package that provides pp_popcon_cnt:\n\nsudo apt-get install pp-popularity-contest\n", file=sys.stderr)</span></span>
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1290
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<td class="diff-line-num new_line old" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1290" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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1291
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<td class="diff-line-num new_line" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1286
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<pre style="margin: 0;"> <span id="LC1286" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ try:</span></span>
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<td class="diff-line-num old_line" data-linenumber="1292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1292
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<td class="diff-line-num new_line" data-linenumber="1287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1287
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<pre style="margin: 0;"> <span id="LC1287" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ opts, args = getopt(sys.argv[1:], "hi:o:", ["debug", "help", "silent", "keep-temp", "temp-dir=", "version", "config=",</span></span>
</pre>
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1293
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<td class="diff-line-num new_line" data-linenumber="1288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1288
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<pre style="margin: 0;"> <span id="LC1288" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ "output-blast", "no-names", "with-images", "blast-kickstart-databases=", "ontologies=", "blast-only", "all-predictions"])</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1434" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1434,16 +1429,14 @@ Index: metastudent/metastudent</td>
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1434
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1429
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<pre style="margin: 0;"> <span id="LC1429" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1435
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<td class="diff-line-num new_line" data-linenumber="1430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1430
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<pre style="margin: 0;"> <span id="LC1430" class="line" lang="diff"> """</span>
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<td class="diff-line-num old_line" data-linenumber="1436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1436
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<td class="diff-line-num new_line" data-linenumber="1431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1431
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<pre style="margin: 0;"> <span id="LC1431" class="line" lang="diff"> =pod</span>
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<td class="diff-line-num old old_line" data-linenumber="1437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1437
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<td class="diff-line-num new_line old" data-linenumber="1432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1437" class="line" lang="diff"><span class="p">@@ -868,4 +92<span class="idiff left right">3,3 @@</span></span></span>
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<td class="diff-line-num new old_line" data-linenumber="1438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1432
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<pre style="margin: 0;">+<span id="LC1432" class="line" lang="diff"><span class="p">@@ -868,4 +92<span class="idiff left">0,3 @@</span></span><span class="idiff right"> Tobias Hamp <hampt@rostlab.org></span></span>
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1438
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<td class="diff-line-num new_line" data-linenumber="1433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1433
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<pre style="margin: 0;"> <span id="LC1433" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1439
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1434
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<pre style="margin: 0;"> <span id="LC1434" class="line" lang="diff"> =cut</span>
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<td class="diff-line-num old_line" data-linenumber="1440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1440
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1435
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<pre style="margin: 0;"> <span id="LC1435" class="line" lang="diff"> """</span>
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<td class="diff-line-num old_line" data-linenumber="1441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1441
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1436
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<pre style="margin: 0;"> <span id="LC1436" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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1442
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<pre style="margin: 0;">-<span id="LC1442" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/BlastWrapper.py</span></span>
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1443
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<pre style="margin: 0;">-<span id="LC1443" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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1444
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<pre style="margin: 0;">-<span id="LC1444" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/BlastWrapper.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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1445
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<pre style="margin: 0;">-<span id="LC1445" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/BlastWrapper.py 2019-09-17 01:14:50.559566873 +0100</span></span>
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1446
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<pre style="margin: 0;">-<span id="LC1446" class="line" lang="diff"><span class="p">@@ -6,70 +6,69 @@</span></span>
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1437
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<pre style="margin: 0;">+<span id="LC1437" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/BlastWrapper.py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1438
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<pre style="margin: 0;">+<span id="LC1438" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/BlastWrapper.py</span></span>
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1439
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<pre style="margin: 0;">+<span id="LC1439" class="line" lang="diff"><span class="p">@@ -6,70 +6,69 @@</span> Created on May 18, 2010</span>
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1447
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1440
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<pre style="margin: 0;"> <span id="LC1440" class="line" lang="diff"> </span>
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1448
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1441
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<pre style="margin: 0;"> <span id="LC1441" class="line" lang="diff"> </span>
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1449
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1442
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<pre style="margin: 0;"> <span id="LC1442" class="line" lang="diff"> class blastallParameters:</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1577,10 +1570,8 @@ Index: metastudent/metastudentPkg/BlastWrapper.py</td>
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1577
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1570
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<pre style="margin: 0;"> <span id="LC1570" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ " 2>" + blastParameters.getOutputFilePath()+".err"</span></span>
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1578
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1571
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<pre style="margin: 0;"> <span id="LC1571" class="line" lang="diff"> </span>
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<td class="diff-line-num old_line" data-linenumber="1579" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1579
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<td class="diff-line-num new_line" data-linenumber="1572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1572
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<pre style="margin: 0;"> <span id="LC1572" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return returnString</span></span>
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1580
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<pre style="margin: 0;">-<span id="LC1580" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/Logger.py</span></span>
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1581
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<pre style="margin: 0;">-<span id="LC1581" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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1582
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<pre style="margin: 0;">-<span id="LC1582" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/Logger.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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1583
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<pre style="margin: 0;">-<span id="LC1583" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/Logger.py 2019-09-17 01:14:50.559566873 +0100</span></span>
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1573
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<pre style="margin: 0;">+<span id="LC1573" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/Logger.py</span></span>
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1574
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<pre style="margin: 0;">+<span id="LC1574" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/Logger.py</span></span>
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1584
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1575
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<pre style="margin: 0;"> <span id="LC1575" class="line" lang="diff"><span class="p">@@ -3,31 +3,29 @@</span></span>
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1585
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1576
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<pre style="margin: 0;"> <span id="LC1576" class="line" lang="diff"> # Copyright (c) 2011-2012 Tobias Hamp <hampt@rostlab.org></span>
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<td class="diff-line-num old_line" data-linenumber="1586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1586
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1577
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<pre style="margin: 0;"> <span id="LC1577" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1630" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1630,11 +1621,9 @@ Index: metastudent/metastudentPkg/Logger.py</td>
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1630
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1621
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<pre style="margin: 0;"> <span id="LC1621" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ print(msg, file=sys.stderr)</span></span>
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<td class="diff-line-num old_line" data-linenumber="1631" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1631
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1622
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<pre style="margin: 0;"> <span id="LC1622" class="line" lang="diff"> </span>
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<td class="diff-line-num old_line" data-linenumber="1632" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1632
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<td class="diff-line-num new_line" data-linenumber="1623" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1623
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<pre style="margin: 0;"> <span id="LC1623" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ # cls.internalLogger.info(msg)</span></span>
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1633
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<pre style="margin: 0;">-<span id="LC1633" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/commons.py</span></span>
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1634
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<pre style="margin: 0;">-<span id="LC1634" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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1635
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<pre style="margin: 0;">-<span id="LC1635" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/commons.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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1636
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<pre style="margin: 0;">-<span id="LC1636" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/commons.py 2019-09-17 01:14:50.559566873 +0100</span></span>
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1637
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<pre style="margin: 0;">-<span id="LC1637" class="line" lang="diff"><span class="p">@@ -10,6 +10,7 @@</span></span>
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1624
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<pre style="margin: 0;">+<span id="LC1624" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/commons.py</span></span>
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1625
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<pre style="margin: 0;">+<span id="LC1625" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/commons.py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="1626" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1626
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<pre style="margin: 0;">+<span id="LC1626" class="line" lang="diff"><span class="p">@@ -10,6 +10,7 @@</span> import sys</span>
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1638
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1627
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<pre style="margin: 0;"> <span id="LC1627" class="line" lang="diff"> import shlex</span>
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<td class="diff-line-num old_line" data-linenumber="1639" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1639
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1628
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<pre style="margin: 0;"> <span id="LC1628" class="line" lang="diff"> import time</span>
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1640
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1629
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<pre style="margin: 0;"> <span id="LC1629" class="line" lang="diff"> from multiprocessing.pool import Pool</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1642" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1631" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1642,7 +1631,7 @@ Index: metastudent/metastudentPkg/commons.py</td>
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1642
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1631
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<pre style="margin: 0;"> <span id="LC1631" class="line" lang="diff"> </span>
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1643
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1632
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<pre style="margin: 0;"> <span id="LC1632" class="line" lang="diff"> mfRoot = "GO:0003674"</span>
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1633
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<pre style="margin: 0;"> <span id="LC1633" class="line" lang="diff"> bpRoot = "GO:0008150"</span>
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1645
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<pre style="margin: 0;">-<span id="LC1645" class="line" lang="diff"><span class="p">@@ -17,342 +18,340 @@</span></span>
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1634
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<pre style="margin: 0;">+<span id="LC1634" class="line" lang="diff"><span class="p">@@ -17,342 +18,340 @@</span><span class="idiff left right"> ccRoot = "GO:0005575"</span></span>
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1635
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<pre style="margin: 0;"> <span id="LC1635" class="line" lang="diff"> </span>
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1636
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<pre style="margin: 0;"> <span id="LC1636" class="line" lang="diff"> whiteSpaceCode = "~"</span>
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1648
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1637
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<pre style="margin: 0;"> <span id="LC1637" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2287,11 +2276,9 @@ Index: metastudent/metastudentPkg/commons.py</td>
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2287
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2276
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<pre style="margin: 0;"> <span id="LC2276" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ self.targetToTermToScore[sortedTargets[i]] = result</span></span>
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2288
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2277
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<pre style="margin: 0;"> <span id="LC2277" class="line" lang="diff"> </span>
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2289
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2278
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<pre style="margin: 0;"> <span id="LC2278" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return self</span></span>
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2290
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<pre style="margin: 0;">-<span id="LC2290" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/generateTermNameMapping.py</span></span>
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2291
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<pre style="margin: 0;">-<span id="LC2291" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC2292" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/generateTermNameMapping.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC2293" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/generateTermNameMapping.py 2019-09-17 01:14:50.559566873 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC2294" class="line" lang="diff"><span class="p">@@ -2,16 +2,16 @@</span></span>
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<pre style="margin: 0;">+<span id="LC2279" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/generateTermNameMapping.py</span></span>
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<pre style="margin: 0;">+<span id="LC2280" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/generateTermNameMapping.py</span></span>
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<pre style="margin: 0;">+<span id="LC2281" class="line" lang="diff"><span class="p">@@ -2,16 +2,16 @@</span> import sys</span>
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2282
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<pre style="margin: 0;"> <span id="LC2282" class="line" lang="diff"> </span>
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2283
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<pre style="margin: 0;"> <span id="LC2283" class="line" lang="diff"> </span>
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2297
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2284
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<pre style="margin: 0;"> <span id="LC2284" class="line" lang="diff"> def convertGotermtxtToNameMapping(gotermtxtFilePath, nameMappingFilePath):</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2321,10 +2308,8 @@ Index: metastudent/metastudentPkg/generateTermNameMapping.py</td>
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2321
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2308
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<pre style="margin: 0;"> <span id="LC2308" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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2322
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2309
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<pre style="margin: 0;"> <span id="LC2309" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# if __name__ == "__main__":</span></span>
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2323
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2310
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<pre style="margin: 0;"> <span id="LC2310" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# convertGotermtxtToNameMapping(sys.argv[1], sys.argv[2])</span></span>
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<pre style="margin: 0;">-<span id="LC2324" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py</span></span>
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<pre style="margin: 0;">-<span id="LC2325" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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2326
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<pre style="margin: 0;">-<span id="LC2326" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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2327
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<pre style="margin: 0;">-<span id="LC2327" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py 2019-09-17 01:14:50.559566873 +0100</span></span>
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2311
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<pre style="margin: 0;">+<span id="LC2311" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py</span></span>
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2312
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<pre style="margin: 0;">+<span id="LC2312" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py</span></span>
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2328
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2313
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<pre style="margin: 0;"> <span id="LC2313" class="line" lang="diff"><span class="p">@@ -2,30 +2,31 @@</span></span>
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2329
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2314
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<pre style="margin: 0;"> <span id="LC2314" class="line" lang="diff"> </span>
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2330
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2315
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<pre style="margin: 0;"> <span id="LC2315" class="line" lang="diff"> import sys</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2350" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2365,7 +2350,7 @@ Index: metastudent/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py</td>
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2365
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2350
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<pre style="margin: 0;"> <span id="LC2350" class="line" lang="diff"> buffer = ""</span>
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2351
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2351" class="line" lang="diff"> for line in infile:</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2367
</td>
<td class="diff-line-num new_line" data-linenumber="2352" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2352
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2352" class="line" lang="diff"> if line.startswith('>'):</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2368" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2368
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<td class="diff-line-num new_line old" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2368" class="line" lang="diff"><span class="p">@@ -34,31 +35,31 @@</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2369" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2353
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2353" class="line" lang="diff"><span class="p">@@ -34,31 +35,31 @@</span><span class="idiff left right"> def main():</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2369" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2369
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<td class="diff-line-num new_line" data-linenumber="2354" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2354
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2354" class="line" lang="diff"> entrycount += 1</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2370
</td>
<td class="diff-line-num new_line" data-linenumber="2355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2355
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2355" class="line" lang="diff"> else:</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2371
</td>
<td class="diff-line-num new_line" data-linenumber="2356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2356
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2356" class="line" lang="diff"> buffer += line</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2407,10 +2392,8 @@ Index: metastudent/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2407
</td>
<td class="diff-line-num new_line" data-linenumber="2392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2392
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2392" class="line" lang="diff"> if __name__ == "__main__":</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2408
</td>
<td class="diff-line-num new_line" data-linenumber="2393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2393
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2393" class="line" lang="diff"> try:</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2409
</td>
<td class="diff-line-num new_line" data-linenumber="2394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2394
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2394" class="line" lang="diff"> main()</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2410
</td>
<td class="diff-line-num new_line old" data-linenumber="2395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2410" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/lib/groupA/parser/group2_blastParser.py</span></span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2411
</td>
<td class="diff-line-num new_line old" data-linenumber="2395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2411" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2412
</td>
<td class="diff-line-num new_line old" data-linenumber="2395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2412" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/lib/groupA/parser/group2_blastParser.py 2019-09-17 01:14:50.567566834 +0100</span></span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2413
</td>
<td class="diff-line-num new_line old" data-linenumber="2395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2413" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/lib/groupA/parser/group2_blastParser.py 2019-09-17 01:14:50.559566873 +0100</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2395
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2395" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/lib/groupA/parser/group2_blastParser.py</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2396
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2396" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/lib/groupA/parser/group2_blastParser.py</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2414
</td>
<td class="diff-line-num new_line" data-linenumber="2397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2397
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2397" class="line" lang="diff"><span class="p">@@ -3,20 +3,21 @@</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2415
</td>
<td class="diff-line-num new_line" data-linenumber="2398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2398
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2398" class="line" lang="diff"> </span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2416
</td>
<td class="diff-line-num new_line" data-linenumber="2399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2399
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2399" class="line" lang="diff"> import sys</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2437,7 +2420,7 @@ Index: metastudent/metastudentPkg/lib/groupA/parser/group2_blastParser.py</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2437
</td>
<td class="diff-line-num new_line" data-linenumber="2420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2420
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2420" class="line" lang="diff"> for line in infile:</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2438
</td>
<td class="diff-line-num new_line" data-linenumber="2421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2421
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2421" class="line" lang="diff"> if line.startswith("Results from round 2"):</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2439
</td>
<td class="diff-line-num new_line" data-linenumber="2422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2422
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2422" class="line" lang="diff"> for line in infile:</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2440
</td>
<td class="diff-line-num new_line old" data-linenumber="2423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2440" class="line" lang="diff"><span class="p">@@ -31,29 +32,28 @@</span></span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2423" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2423
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2423" class="line" lang="diff"><span class="p">@@ -31,29 +32,28 @@</span><span class="idiff left right"> def main():</span></span>
</pre>
</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2441
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<td class="diff-line-num new_line" data-linenumber="2424" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2424
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2424" class="line" lang="diff"> else:</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2442
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<td class="diff-line-num new_line" data-linenumber="2425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2425
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2425" class="line" lang="diff"> outfile.write(go + "\n")</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2443
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<td class="diff-line-num new_line" data-linenumber="2426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2426
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2426" class="line" lang="diff"> break</span>
</pre>
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</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2473" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2456" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2473,10 +2456,8 @@ Index: metastudent/metastudentPkg/lib/groupA/parser/group2_blastParser.py</td>
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<td class="diff-line-num old_line" data-linenumber="2473" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2473
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<td class="diff-line-num new_line" data-linenumber="2456" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2456
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2456" class="line" lang="diff"> if __name__ == "__main__":</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2474" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2474
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<td class="diff-line-num new_line" data-linenumber="2457" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2457
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2457" class="line" lang="diff"> try:</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2475
</td>
<td class="diff-line-num new_line" data-linenumber="2458" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2458
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2458" class="line" lang="diff"> main()</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2476" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2476
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<td class="diff-line-num new_line old" data-linenumber="2459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2476" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2477
</td>
<td class="diff-line-num new_line old" data-linenumber="2459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2477" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2478
</td>
<td class="diff-line-num new_line old" data-linenumber="2459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2478" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py 2019-09-17 01:14:50.567566834 +0100</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2479
</td>
<td class="diff-line-num new_line old" data-linenumber="2459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2479" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py 2019-09-17 01:14:50.559566873 +0100</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2459
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2459" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py</span></span>
</pre>
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</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2460" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2460
</td>
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<pre style="margin: 0;">+<span id="LC2460" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2480
</td>
<td class="diff-line-num new_line" data-linenumber="2461" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2461
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2461" class="line" lang="diff"><span class="p">@@ -3,27 +3,28 @@</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2481
</td>
<td class="diff-line-num new_line" data-linenumber="2462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2462
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2462" class="line" lang="diff"> </span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2482
</td>
<td class="diff-line-num new_line" data-linenumber="2463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2463
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2463" class="line" lang="diff"> import sys</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2511,7 +2492,7 @@ Index: metastudent/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2511
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<td class="diff-line-num new_line" data-linenumber="2492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2492
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2492" class="line" lang="diff"> if go == '':</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2512
</td>
<td class="diff-line-num new_line" data-linenumber="2493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2493
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2493" class="line" lang="diff"> go = '>' + tmpline[1].lstrip()[4:]</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2513
</td>
<td class="diff-line-num new_line" data-linenumber="2494" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2494
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2494" class="line" lang="diff"> else:</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2514
</td>
<td class="diff-line-num new_line old" data-linenumber="2495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2514" class="line" lang="diff"><span class="p">@@ -35,25 +36,26 @@</span></span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="2515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2495
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<pre style="margin: 0;">+<span id="LC2495" class="line" lang="diff"><span class="p">@@ -35,25 +36,26 @@</span><span class="idiff left right"> def main():</span></span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2515
</td>
<td class="diff-line-num new_line" data-linenumber="2496" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2496
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2496" class="line" lang="diff"> # if GO and SQ has been found in one block (separated by '//') the GOs and SQ is written into the outfile</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2516
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<td class="diff-line-num new_line" data-linenumber="2497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2497
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2497" class="line" lang="diff"> if go != '':</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2517
</td>
<td class="diff-line-num new_line" data-linenumber="2498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2498
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2498" class="line" lang="diff"> outfile.write(go+'\n'+sq+'\n')</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2550" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2550,10 +2531,8 @@ Index: metastudent/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py</td>
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2550
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2531
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<pre style="margin: 0;"> <span id="LC2531" class="line" lang="diff"> if __name__ == "__main__":</span>
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2551
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<td class="diff-line-num new_line" data-linenumber="2532" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2532
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<pre style="margin: 0;"> <span id="LC2532" class="line" lang="diff"> try:</span>
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2552
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<td class="diff-line-num new_line" data-linenumber="2533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2533
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<pre style="margin: 0;"> <span id="LC2533" class="line" lang="diff"> main()</span>
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2553
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<pre style="margin: 0;">-<span id="LC2553" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/lib/groupA/parser/group2_goStatistics.py</span></span>
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2554
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<pre style="margin: 0;">-<span id="LC2554" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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2555
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<td class="diff-line-num new_line old" data-linenumber="2534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2555" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/lib/groupA/parser/group2_goStatistics.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2556
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<td class="diff-line-num new_line old" data-linenumber="2534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2556" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/lib/groupA/parser/group2_goStatistics.py 2019-09-17 01:14:50.559566873 +0100</span></span>
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2534
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<pre style="margin: 0;">+<span id="LC2534" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/lib/groupA/parser/group2_goStatistics.py</span></span>
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2535
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<pre style="margin: 0;">+<span id="LC2535" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/lib/groupA/parser/group2_goStatistics.py</span></span>
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2557
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<td class="diff-line-num new_line" data-linenumber="2536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2536
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<pre style="margin: 0;"> <span id="LC2536" class="line" lang="diff"><span class="p">@@ -3,21 +3,22 @@</span></span>
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<td class="diff-line-num old_line" data-linenumber="2558" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2558
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2537
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<pre style="margin: 0;"> <span id="LC2537" class="line" lang="diff"> import sys</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2559
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2538
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<pre style="margin: 0;"> <span id="LC2538" class="line" lang="diff"> import math</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2581,7 +2560,7 @@ Index: metastudent/metastudentPkg/lib/groupA/parser/group2_goStatistics.py</td>
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<td class="diff-line-num old_line" data-linenumber="2581" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2581
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2560
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<pre style="margin: 0;"> <span id="LC2560" class="line" lang="diff"> # deriving the needed numbers</span>
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<td class="diff-line-num old_line" data-linenumber="2582" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2582
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<td class="diff-line-num new_line" data-linenumber="2561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2561
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2561" class="line" lang="diff"> for line in infile:</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2583" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2583
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2562
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<pre style="margin: 0;"> <span id="LC2562" class="line" lang="diff"> if line.startswith('>'):</span>
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<td class="diff-line-num old old_line" data-linenumber="2584" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2584
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<td class="diff-line-num new_line old" data-linenumber="2563" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2584" class="line" lang="diff"><span class="p">@@ -26,22 +27,21 @@</span></span>
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2563
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<pre style="margin: 0;">+<span id="LC2563" class="line" lang="diff"><span class="p">@@ -26,22 +27,21 @@</span><span class="idiff left right"> def main():</span></span>
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2585
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2564
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<pre style="margin: 0;"> <span id="LC2564" class="line" lang="diff"> if len(gos) == 1:</span>
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<td class="diff-line-num old_line" data-linenumber="2586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2586
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2565
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<pre style="margin: 0;"> <span id="LC2565" class="line" lang="diff"> seqWithOneGo += 1</span>
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<td class="diff-line-num old_line" data-linenumber="2587" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2587
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2566
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<pre style="margin: 0;"> <span id="LC2566" class="line" lang="diff"> goCount += len(gos)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2612" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2591" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2612,11 +2591,9 @@ Index: metastudent/metastudentPkg/lib/groupA/parser/group2_goStatistics.py</td>
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2612
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2591
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<pre style="margin: 0;"> <span id="LC2591" class="line" lang="diff"> </span>
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2613
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2592
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<pre style="margin: 0;"> <span id="LC2592" class="line" lang="diff"> </span>
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2593
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<pre style="margin: 0;"> <span id="LC2593" class="line" lang="diff"> if __name__ == "__main__":</span>
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2615
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<td class="diff-line-num new_line old" data-linenumber="2594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2615" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/metastudentPkg/runMethods.py</span></span>
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2616
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<pre style="margin: 0;">-<span id="LC2616" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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2617
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<td class="diff-line-num new_line old" data-linenumber="2594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2617" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/metastudentPkg/runMethods.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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2618
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<td class="diff-line-num new_line old" data-linenumber="2594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2618" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/metastudentPkg/runMethods.py 2019-09-17 01:14:50.559566873 +0100</span></span>
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2619
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<pre style="margin: 0;">-<span id="LC2619" class="line" lang="diff"><span class="p">@@ -5,9 +5,9 @@</span></span>
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2594
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<pre style="margin: 0;">+<span id="LC2594" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/metastudentPkg/runMethods.py</span></span>
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2595
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<pre style="margin: 0;">+<span id="LC2595" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/metastudentPkg/runMethods.py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2596" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2596
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<pre style="margin: 0;">+<span id="LC2596" class="line" lang="diff"><span class="p">@@ -5,9 +5,9 @@</span> Created on Mar 17, 2012</span>
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2620
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2597
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<pre style="margin: 0;"> <span id="LC2597" class="line" lang="diff"> '''</span>
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<td class="diff-line-num old_line" data-linenumber="2621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2621
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<td class="diff-line-num new_line" data-linenumber="2598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2598
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<pre style="margin: 0;"> <span id="LC2598" class="line" lang="diff"> </span>
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<td class="diff-line-num old_line" data-linenumber="2622" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2622
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<td class="diff-line-num new_line" data-linenumber="2599" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2599
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<pre style="margin: 0;"> <span id="LC2599" class="line" lang="diff"> import os</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2629" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2606" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2629,7 +2606,7 @@ Index: metastudent/metastudentPkg/runMethods.py</td>
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<td class="diff-line-num old_line" data-linenumber="2629" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2629
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2606
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<pre style="margin: 0;"> <span id="LC2606" class="line" lang="diff"> from metastudentPkg.commons import p, splitBigFastaFile</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2630" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2630
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2607
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<pre style="margin: 0;"> <span id="LC2607" class="line" lang="diff"> import sys</span>
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2631
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2608
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<pre style="margin: 0;"> <span id="LC2608" class="line" lang="diff"> import shlex</span>
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2632
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<pre style="margin: 0;">-<span id="LC2632" class="line" lang="diff"><span class="p">@@ -16,206 +16,212 @@</span></span>
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2609
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<pre style="margin: 0;">+<span id="LC2609" class="line" lang="diff"><span class="p">@@ -16,206 +16,212 @@</span><span class="idiff left right"> import time</span></span>
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2633
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2610
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<pre style="margin: 0;"> <span id="LC2610" class="line" lang="diff"> </span>
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2634
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2611
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<pre style="margin: 0;"> <span id="LC2611" class="line" lang="diff"> </span>
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<td class="diff-line-num old_line" data-linenumber="2635" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2635
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2612
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<pre style="margin: 0;"> <span id="LC2612" class="line" lang="diff"> def runBlast(inputFilePath, blastDatabasePath, outputFilePath, tmpDir, eValue, iters, configMap):</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3040" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3017" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3040,11 +3017,9 @@ Index: metastudent/metastudentPkg/runMethods.py</td>
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3040
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3017
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<pre style="margin: 0;"> <span id="LC3017" class="line" lang="diff"> </span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3041" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3041
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3018
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<pre style="margin: 0;"> <span id="LC3018" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- return predFilesContent</span></span>
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<td class="diff-line-num old_line" data-linenumber="3042" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3042
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3019
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<pre style="margin: 0;"> <span id="LC3019" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return predFilesContent</span></span>
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3043
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<pre style="margin: 0;">-<span id="LC3043" class="line" lang="diff"><span class="gh" style="color: #999;">Index: metastudent/setup.py</span></span>
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3044
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<pre style="margin: 0;">-<span id="LC3044" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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3045
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<pre style="margin: 0;">-<span id="LC3045" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- metastudent.orig/setup.py 2019-09-17 01:14:50.567566834 +0100</span></span>
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3046
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<pre style="margin: 0;">-<span id="LC3046" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ metastudent/setup.py 2019-09-17 01:14:50.563566854 +0100</span></span>
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<td class="diff-line-num old old_line" data-linenumber="3047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3047
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<td class="diff-line-num new_line old" data-linenumber="3020" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3047" class="line" lang="diff"><span class="p">@@ -11,21 +11,23 @@</span></span>
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3020
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<pre style="margin: 0;">+<span id="LC3020" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/setup.py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3021
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<pre style="margin: 0;">+<span id="LC3021" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/setup.py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3022" class="line" lang="diff"><span class="p">@@ -11,21 +11,23 @@</span> import shutil</span>
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3048
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3023
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<pre style="margin: 0;"> <span id="LC3023" class="line" lang="diff"> import tempfile</span>
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3049
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3024
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<pre style="margin: 0;"> <span id="LC3024" class="line" lang="diff"> </span>
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3025
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<pre style="margin: 0;"> <span id="LC3025" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3081" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3081,7 +3056,7 @@ Index: metastudent/setup.py</td>
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3081
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<pre style="margin: 0;"> <span id="LC3056" class="line" lang="diff"> # if "/.svn" not in path and "dataset_201012" not in path:</span>
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3082
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<pre style="margin: 0;"> <span id="LC3057" class="line" lang="diff"> # for filename in files:</span>
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<pre style="margin: 0;"> <span id="LC3058" class="line" lang="diff"> # filenameSplit = filename.split(".")</span>
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3084
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<pre style="margin: 0;">-<span id="LC3084" class="line" lang="diff"><span class="p">@@ -36,70 +38,73 @@</span></span>
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<pre style="margin: 0;">+<span id="LC3059" class="line" lang="diff"><span class="p">@@ -36,70 +38,73 @@</span><span class="idiff left right"> executables=set(["CafaWrapper3.pl","exer</span></span>
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3085
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<pre style="margin: 0;"> <span id="LC3060" class="line" lang="diff"> # dataFiles.append(os.path.relpath(os.path.join(path, filename), pkgPath))</span>
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3086
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3061
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<pre style="margin: 0;"> <span id="LC3061" class="line" lang="diff"> </span>
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3087
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3062
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<pre style="margin: 0;"> <span id="LC3062" class="line" lang="diff"> for path, dirs, files in os.walk(os.path.join(pkgPath, "lib")):</span>
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