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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/cyvcf2">Debian Med / cyvcf2</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/691c07e4c3ac2a0d8c86c8f8e2876584fe981a0c">691c07e4</a></strong>
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<span>by Nilesh Patra</span>
<i>at 2021-02-03T17:55:51+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Attempt again to disable failing test on i386
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<h4>1 changed file:</h4>
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<a href="#dbd7767123e22159c0b72b2782db4dddedf5dfd8">
debian/patches/i386.patch
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<h4>Changes:</h4>
<li id="dbd7767123e22159c0b72b2782db4dddedf5dfd8">
<a href="https://salsa.debian.org/med-team/cyvcf2/-/commit/691c07e4c3ac2a0d8c86c8f8e2876584fe981a0c#dbd7767123e22159c0b72b2782db4dddedf5dfd8"><strong>debian/patches/i386.patch</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: Skip test on i386 because the file ends up with a few NaN values due to exceeding ranges, hence skipping</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <npatra974@gmail.com></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-01-26</span></span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/cyvcf2/tests/test_reader.py</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/cyvcf2/tests/test_reader.py</span></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">@@ -12,6 +12,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"> except ImportError:</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"> from pathlib2 import Path # python 2 backport</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import <span class="idiff left right">platform</span></span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import <span class="idiff left right">subprocess</span></span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import unittest</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> HERE = os.path.dirname(__file__)</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> VCF_PATH = os.path.join(HERE, "test.vcf.gz")</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="p">@@ -1131,6 +1133,<span class="idiff left right">8</span> @@</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="p">@@ -1131,6 +1133,<span class="idiff left right">7</span> @@</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> vcf.seqlens</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> assert isinstance(ae.exception, AttributeError)</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@unittest.skipIf((platform.uname().machine == 'i386' or platform.uname().machine == 'x86_64') and platform.architecture()[0] == '32bit', \</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ reason="The file ends up with a few NaN values on i386 due to exceeding ranges, hence skipping")</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+@unittest.skipIf('i386' in str(subprocess.check_output('dpkg-architecture -qDEB_BUILD_ARCH', shell=True)), reason="The file ends up with a few NaN values on i386 due to exceeding ranges, hence skipping")</span></span>
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"> def test_set_unknown_format():</span>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"> vcf = VCF(VCF_PATH)</span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
23
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"> vcf.add_format_to_header({'ID':'NEW', 'Type':'Float', 'Number':1, 'Description':'...'})</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"></span></pre>
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