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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6f4e2ebd7fd48bf391758f108c8405350e4c1953">6f4e2ebd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-03T13:42:18+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/6f4e2ebd7fd48bf391758f108c8405350e4c1953#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 03 Feb 2021 <span class="idiff left right">01</span>:42:03 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 03 Feb 2021 <span class="idiff left right">13</span>:42:03 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">5</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">7</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 96 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 53 | {laboratory,practice,his,oncology,covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 34 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 32 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 30 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> htsjdk | 25 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> dicom3tools | 33 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> gdcm | 33 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 28 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> htsjdk | 26 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> gdcm | 24 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> dicomscope | 22 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gdcm | 22 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> odin | 19 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> nifticlib | 18 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> nifticlib | 19 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> odin | 18 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> plastimatch | 16 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 15 | {covid-19,practice}</span> | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">dicomnifti | 14 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <span class="idiff left right">dicomnifti | 15 | {imaging} </span> | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> <span class="idiff left right">gnumed-server | 14 | {covid-19,practice}</span> | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> insighttoolkit4 | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> king | 11 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> openslide | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> king | 12 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> openslide | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,7 +39,6 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> biomaj3-cli | 7 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> bio-tradis | 7 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> ghmm | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> jellyfish1 | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> libncl | 7 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,8 +55,8 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> embassy-domainatrix | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> embassy-domsearch | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> estscan | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> ghmm | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> lamarc | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> melting | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> perm | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -73,6 +72,7 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> busco | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> cufflinks | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> libpal-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -97,7 +97,6 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> mhap | 4 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> nifticlib | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> paraclu | 4 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -124,6 +123,7 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> nifticlib | 3 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -140,6 +140,7 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> libmuscle | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> oscar | 2 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> python-bcbio-gff | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -176,7 +177,6 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> libstatgen | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> nanosv | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="plaintext"> openslide | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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181
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> pbseqlib | 1 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -224,8 +224,8 @@ Last-Update: Wed, 03 Feb 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> plasmidid | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio,bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> samtools-legacy | 0 | {bio-dev} | </span>
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