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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/gubbins">Debian Med / gubbins</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/0a2f18e54a48038e9d3d84029fd610662d97a562">0a2f18e5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-04T22:57:47+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/8fa78ea3f07c27049b5d54173326dd61b99ac92d">8fa78ea3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-04T22:57:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/ff2e7eaf57f0f0c17bade640d4d72ace906cbb8f">ff2e7eaf</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-04T22:57:59+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/3.0.0'
Update to upstream version '3.0.0'
with Debian dir f706e6a04ae34ab6da788e2df77b4444a7a97b55</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/a36bf52059b82be5df8c412390bd95f7b73b197f">a36bf520</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-04T22:58:00+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/424a7e4437e5418f5b22ca68111e4d1bdb481e8f">424a7e44</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-04T23:25:08+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/81e114faeb15f35b3465e4feb1bff49ca85085ee">81e114fa</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-04T23:36:19+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Build-Depends: python3-scipy <!nocheck>, python3-multiprocess <!nocheck>, python3-wheel <!nocheck>
</pre>
</li>
</ul>
<h4>29 changed files:</h4>
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<li class="file-stats">
<a href="#fe77d5d1439f26e353a42bbd38dece2467ff6558">
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+
.github/workflows/build.yml
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#3a2470b33ad88916745979351435ccba0d2f1100">
debian/patches/gubbins_exe_in_usr_lib.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#112a0772ac215bf87f8257be66adb66e6c8389b0">
<span class="deleted-file">
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debian/patches/spelling-error-in-binary.patch
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<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
<span class="new-file">
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environment.yml
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<li class="file-stats">
<a href="#58db356d9e8caa509e2c0b01ad695756114c19e9">
install_dependencies.sh
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<a href="#2be6fe092a42753d652cbb209e2d5f96d7c5e1ef">
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obsolete_changelog
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<li class="file-stats">
<a href="#e804e65e8c71d9829b02b843269b57e57ecb1bf5">
python/Makefile.am
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<li class="file-stats">
<a href="#51300daad658670c4ce1468f53cc4c0aa201b508">
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python/VERSION
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<li class="file-stats">
<a href="#0e20753a4c88045119953fc070aa994389074a00">
python/gubbins/ValidateFastaAlignment.py
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<li class="file-stats">
<a href="#dbd8f55f9d2d447a9e6ecbc6ede7137b37f70b3b">
python/gubbins/__init__.py
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<li class="file-stats">
<a href="#aaaba74cad9a3f815206ba8bf91e26f24eb5a22a">
python/gubbins/common.py
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<li class="file-stats">
<a href="#7fda0caa14793966c396bc00135eaa6633fb5b4f">
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python/gubbins/pyjar.py
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<li class="file-stats">
<a href="#d647c87bee00bdb39a6f51342867cc4d0f2c460d">
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python/gubbins/run_gubbins.py
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<li class="file-stats">
<a href="#833e9bff29e6ff7be1a7cba0459eff20f1a5b564">
<span class="new-file">
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python/gubbins/tests/data/bootstrapping_test.aln
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<li class="file-stats">
<a href="#55dba4aeb3f8b32d23fad72fb6d515ecf3294f8e">
python/gubbins/tests/data/non_bi_tree.tre.expected
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<li class="file-stats">
<a href="#e5752525f61807514ba8e9c61d909bc05146ab7e">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2
→
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2_expected
</a>
</li>
<li class="file-stats">
<a href="#9749d84516348c202691e49cc1ed452fb19f3b5e">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4
→
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_expected
</a>
</li>
<li class="file-stats">
<a href="#c1392f68b247454df74edf7fbcbaf985d16aca46">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_tree_at_midpoint_expected
</a>
</li>
<li class="file-stats">
<a href="#30767dfc0e15f9e98c7a68a527eb1f9c8761207f">
python/gubbins/tests/test_dependencies.py
</a>
</li>
<li class="file-stats">
<a href="#54ac0d7ed2514d740146fc1a35e6f6e6db19e122">
python/gubbins/tests/test_pre_process_fasta.py
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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