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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/gubbins">Debian Med / gubbins</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gubbins/-/commit/8fa78ea3f07c27049b5d54173326dd61b99ac92d">8fa78ea3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-04T22:57:48+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.0</pre>
</li>
</ul>
<h4>24 changed files:</h4>
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<a href="#fe77d5d1439f26e353a42bbd38dece2467ff6558">
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.github/workflows/build.yml
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<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
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</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
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+
environment.yml
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<li class="file-stats">
<a href="#58db356d9e8caa509e2c0b01ad695756114c19e9">
install_dependencies.sh
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<li class="file-stats">
<a href="#2be6fe092a42753d652cbb209e2d5f96d7c5e1ef">
<span class="deleted-file">
−
obsolete_changelog
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<li class="file-stats">
<a href="#e804e65e8c71d9829b02b843269b57e57ecb1bf5">
python/Makefile.am
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<li class="file-stats">
<a href="#51300daad658670c4ce1468f53cc4c0aa201b508">
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+
python/VERSION
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<li class="file-stats">
<a href="#0e20753a4c88045119953fc070aa994389074a00">
python/gubbins/ValidateFastaAlignment.py
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<li class="file-stats">
<a href="#dbd8f55f9d2d447a9e6ecbc6ede7137b37f70b3b">
python/gubbins/__init__.py
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<li class="file-stats">
<a href="#aaaba74cad9a3f815206ba8bf91e26f24eb5a22a">
python/gubbins/common.py
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<li class="file-stats">
<a href="#7fda0caa14793966c396bc00135eaa6633fb5b4f">
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python/gubbins/pyjar.py
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<li class="file-stats">
<a href="#d647c87bee00bdb39a6f51342867cc4d0f2c460d">
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+
python/gubbins/run_gubbins.py
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<li class="file-stats">
<a href="#833e9bff29e6ff7be1a7cba0459eff20f1a5b564">
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+
python/gubbins/tests/data/bootstrapping_test.aln
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<li class="file-stats">
<a href="#55dba4aeb3f8b32d23fad72fb6d515ecf3294f8e">
python/gubbins/tests/data/non_bi_tree.tre.expected
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<li class="file-stats">
<a href="#e5752525f61807514ba8e9c61d909bc05146ab7e">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2
→
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_2_expected
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<li class="file-stats">
<a href="#9749d84516348c202691e49cc1ed452fb19f3b5e">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4
→
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_at_sequence_4_expected
</a>
</li>
<li class="file-stats">
<a href="#c1392f68b247454df74edf7fbcbaf985d16aca46">
python/gubbins/tests/data/robinson_foulds_distance_tree1.tre.reroot_tree_at_midpoint_expected
</a>
</li>
<li class="file-stats">
<a href="#30767dfc0e15f9e98c7a68a527eb1f9c8761207f">
python/gubbins/tests/test_dependencies.py
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<li class="file-stats">
<a href="#54ac0d7ed2514d740146fc1a35e6f6e6db19e122">
python/gubbins/tests/test_pre_process_fasta.py
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<h5>The diff was not included because it is too large.</h5>
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