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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5f414e2a258c4dd887d248164f0b4139a320f408">5f414e2a</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-05T13:42:19+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/5f414e2a258c4dd887d248164f0b4139a320f408#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 05 Feb 2021 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Fri, 05 Feb 2021 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">78</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 1<span class="idiff left right">80</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 95 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} | </span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> dicom3tools | 34 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">3</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | <span class="idiff left right">30</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> gdcm | 3<span class="idiff left right">1</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | <span class="idiff left right">29</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> htsjdk | 28 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> gdcm | 24 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dicomscope | 23 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> nifticlib | 19 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> dicomscope | 24 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> gdcm | 23 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> dcm2niix | 20 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> odin | 19 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> nifticlib | 18 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> plastimatch | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> dicomnifti | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">5</span> | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> gnumed-server | 1<span class="idiff left right">4</span> | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> minc-tools | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> king | 12 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> openslide | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> adun.app | 10 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> ngs-sdk | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> invesalius | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> invesalius | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> librg-utils-perl | 8 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> mia | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> mipe | 8 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +37,6 @@ Last-Update: Fri, 05 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> nifti2dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> prime-phylo | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> biomaj3-cli | 7 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> bio-tradis | 7 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -49,7 +49,6 @@ Last-Update: Fri, 05 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> runcircos-gui | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> tracetuner | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> bamkit | 6 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> beast-mcmc | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> bitseq | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> ecopcr | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,18 +60,16 @@ Last-Update: Fri, 05 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> melting | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> perm | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> rambo-k | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> saint | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> seqsero | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> treeview | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> busco | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> cufflinks | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="plaintext"> libpal-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -82,21 +79,26 @@ Last-Update: Fri, 05 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> pscan-chip | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> qcumber | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> quorum | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> rambo-k | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> rdp-classifier | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> anfo | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> salmid | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> salmon | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> seqsero | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> arden | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> bamkit | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> canu | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> embassy-domalign | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> hinge | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> jmodeltest | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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100
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> mhap | 4 | {bio,bio-ngs} | </span>
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101
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> orthanc-mysql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> paraclu | 4 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -104,8 +106,6 @@ Last-Update: Fri, 05 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> rtax | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> salmid | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> salmon | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> sibsim4 | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> sight | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -121,10 +121,9 @@ Last-Update: Fri, 05 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> delly | 3 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> fsm-lite | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> n<span class="idiff left right">ifticlib | 3 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> n<span class="idiff left right">gs-sdk | 3 | {bio-dev} </span> | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> plasmidseeker | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -140,6 +139,7 @@ Last-Update: Fri, 05 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> libmuscle | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> nifticlib | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> oscar | 2 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> python-bcbio-gff | 2 | {bio-dev} | </span>
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