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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-cogent">Debian Med / python-cogent</a>
</h3>
<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/6d4ce250edccbfbd8bedb7e7abe857be1a05a8bd">6d4ce250</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-07T22:25:02+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">build-dep on python3-pytest to fix the tests
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<li>
<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/1dada6333f6a77d2d80cee97000bb1e646d2438b">1dada633</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-07T22:25:02+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add Python 3.9 compatibility
</pre>
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<strong><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/41fe85ad208d3c3eeafe353061222a7892dd846f">41fe85ad</a></strong>
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<span>by Michael R. Crusoe</span>
<i>at 2021-02-07T22:25:03+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#e9d85b21dda4337393aa5f8b975aa02701405bd6">
<span class="new-file">
+
debian/patches/py39_union_dict
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#0325e4f25102e77f8a7e2b29dd07d7e574a1b96e">
debian/patches/sphinx.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/865b350783a4a7b870ab67536edf27cea7459a09...41fe85ad208d3c3eeafe353061222a7892dd846f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">python-cogent (2020.12.21a+dfsg-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-cogent (2020.12.21a+dfsg-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> * New upstream version</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,8 +9,10 @@ python-cogent (2020.12.21a+dfsg-1) UNRELEASED; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> [ Michael R. Crusoe ]</span>
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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> * debian/control: build without python3-jupyter-sphinx</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * build-dep on python3-pytest to fix the tests</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> * Add patch to give Python 3.9 compatibility</span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> -- <span class="idiff left right">Andreas Tille <tille@debian.org> Tue, 26 Jan 2021 11:25:08</span> +0100</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> -- <span class="idiff left right">Michael R. Crusoe <crusoe@debian.org> Sun, 07 Feb 2021 21:40:21</span> +0100</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">python-cogent (2020.6.30a0+dfsg-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/865b350783a4a7b870ab67536edf27cea7459a09...41fe85ad208d3c3eeafe353061222a7892dd846f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +22,7 @@ Build-Depends: debhelper-compat (= 13),</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3-sphinx-bootstrap-theme,</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> python3-sphinx-gallery,</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> python3-sphinxcontrib.bibtex,</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> python3-pytest <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> cython3,</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> pandoc</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Standards-Version: 4.5.1</span>
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<li id="e9d85b21dda4337393aa5f8b975aa02701405bd6">
<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/865b350783a4a7b870ab67536edf27cea7459a09...41fe85ad208d3c3eeafe353061222a7892dd846f#e9d85b21dda4337393aa5f8b975aa02701405bd6"><strong>debian/patches/py39_union_dict</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">From: Michael R. Crusoe <crusoe@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Subject: Add Python 3.9 compatibility</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Forwarded: https://github.com/cogent3/cogent3/pull/850</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-cogent.orig/src/cogent3/util/union_dict.py</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-cogent/src/cogent3/util/union_dict.py</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -2,7 +2,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> """UnionDict extension of dict.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> from cogent3.util.misc import extend_docstring_from</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+import sys</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> __author__ = "Thomas La"</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> __copyright__ = "Copyright 2007-2020, The Cogent Project"</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="p">@@ -64,6 +64,14 @@</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> self.union(other)</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> return self</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if sys.version_info[:2] == (3, 9):</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ def __ror__(self, other):</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ other.union(self)</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return other</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ def __ior__(self, other):</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ return self.__or__(other)</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> def union(self, other):</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> """returns the union of self with other</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> </span></pre>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/865b350783a4a7b870ab67536edf27cea7459a09...41fe85ad208d3c3eeafe353061222a7892dd846f#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">sphinx.patch</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix_interpreter.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">py39_union_dict</span></pre>
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<li id="0325e4f25102e77f8a7e2b29dd07d7e574a1b96e">
<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/865b350783a4a7b870ab67536edf27cea7459a09...41fe85ad208d3c3eeafe353061222a7892dd846f#0325e4f25102e77f8a7e2b29dd07d7e574a1b96e"><strong>debian/patches/sphinx.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,7 @@ Forwarded: not-needed</td>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">--- python-cogent.orig/doc/conf.py</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-cogent/doc/conf.py</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">8,18 +18</span>,19 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="p">@@ -1<span class="idiff left right">9,18 +19</span>,19 @@</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"> numpydoc_class_members_toctree = False</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"> </span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> extensions = [</span>
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<a href="https://salsa.debian.org/med-team/python-cogent/-/compare/865b350783a4a7b870ab67536edf27cea7459a09...41fe85ad208d3c3eeafe353061222a7892dd846f#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,7 @@</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">DEB_BUILD_MAINT_OPTIONS</span> <span class="o" style="font-weight: 600;">=</span> <span class="nv" style="color: #008080;">hardening</span><span class="o" style="font-weight: 600;">=</span>+bindnow</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">PYBUILD_BEFORE_TEST</span><span class="o" style="font-weight: 600;">=</span><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-r</span> <span class="o" style="font-weight: 600;">{</span><span class="nb" style="color: #0086b3;">dir</span><span class="o" style="font-weight: 600;">}</span>/tests/data <span class="o" style="font-weight: 600;">{</span>build_dir<span class="o" style="font-weight: 600;">}</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="make"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">PYBUILD_TEST_PYTEST</span><span class="o" style="font-weight: 600;">=</span>1</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="make"><span class="k" style="font-weight: 600;">export </span><span class="nv" style="color: #008080;">PYBUILD_NAME</span><span class="o" style="font-weight: 600;">=</span>cogent3</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="make"></span>
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="make"><span class="k" style="font-weight: 600;">include</span><span class="sx" style="color: #d14;"> /usr/share/dpkg/default.mk</span></span>
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