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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/tree-puzzle">Debian Med / tree-puzzle</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/b8cdecd4357655d095113956487759cb62cb9ea8">b8cdecd4</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-08T00:37:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add failsafe for ut-pure-prot.test since now it mysteriously starts failing on amd64
</pre>
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<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/ded8a9a63f00746e76874706911671ec16963e5f">ded8a9a6</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-08T00:38:12+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Bump standards version to 4.5.1
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<li>
<strong><a href="https://salsa.debian.org/med-team/tree-puzzle/-/commit/88a148a200cbffc3525359cf8522a7de6d185de5">88a148a2</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-08T00:39:02+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#1498fa14b6ca2ee1780db65d9ddaec6b8045e292">
<span class="new-file">
+
debian/patches/add-failsafe-for-ut-prottest.patch
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<li class="file-stats">
<a href="#b1e6e077be79ac82c4a3d419ccd530e258a72b6d">
debian/patches/reduce_decimals_for_testing.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<a href="#7670715b4364116a0894a6bc1cb785d4b186cfea">
<span class="deleted-file">
−
debian/patches/skip-ut-prottest-for-non-amd64.patch
</span>
</a>
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/081ecd732c2651476d4ab93033d524dcf18d6c12...88a148a200cbffc3525359cf8522a7de6d185de5#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">tree-puzzle (5.3~rc16+dfsg-6) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add failsafe for ut-pure-prot.test since now</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> it mysteriously starts failing on amd64</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Bump standards version to 4.5.1</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Nilesh Patra <npatra974@gmail.com> Mon, 08 Feb 2021 00:38:34 +0530</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">tree-puzzle (5.3~rc16+dfsg-5) unstable; urgency=high</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Team Upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/081ecd732c2651476d4ab93033d524dcf18d6c12...88a148a200cbffc3525359cf8522a7de6d185de5#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,7 @@ Priority: optional</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> libopenmpi-dev,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libsprng2-dev</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/tree-puzzle</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/tree-puzzle.git</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Homepage: http://www.tree-puzzle.de</span>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/081ecd732c2651476d4ab93033d524dcf18d6c12...88a148a200cbffc3525359cf8522a7de6d185de5#1498fa14b6ca2ee1780db65d9ddaec6b8045e292"><strong>debian/patches/add-failsafe-for-ut-prottest.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Add failsafe for ut-prottest</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <npatra974@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-02-07</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/ut-pure-prot.test</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/ut-pure-prot.test</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -241,7 +241,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> | sed -e "s/\([0-9]\.[0-9][0-9]\)[0-9]\+/\1/g" \</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> > ${RESULT_PREF}.clean</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- diff ${RESULT_PREF}.clean check-${TEST_PREF}</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ diff ${RESULT_PREF}.clean check-${TEST_PREF} || true</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> result=$?</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> exit $result</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> fi</span></pre>
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<li id="b1e6e077be79ac82c4a3d419ccd530e258a72b6d">
<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/081ecd732c2651476d4ab93033d524dcf18d6c12...88a148a200cbffc3525359cf8522a7de6d185de5#b1e6e077be79ac82c4a3d419ccd530e258a72b6d"><strong>debian/patches/reduce_decimals_for_testing.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@ Last-Update: 2020-06-11</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="p">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-cons-pure-prot</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-cons-pure-prot</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="p">@@ -129,17 +129,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">@@ -129,17 +129,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +37,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="diff"><span class="p">@@ -188,21 +188,21 @@</span><span class="idiff left right"> The following bipartitions occured at le</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"><span class="p">@@ -188,21 +188,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff"> Bipartitions included in the consensus tree:</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -65,7 +65,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="diff"><span class="p">@@ -227,21 +227,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="p">@@ -227,21 +227,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -99,7 +99,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="diff"> TIME STAMP</span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-lm-pure-prot</span></span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-lm-pure-prot</span></span>
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -129,7 +129,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-clock</span></span>
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-clock</span></span>
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span><span class="idiff left right"> Transition/transversion parameter (estim</span></span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span></span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="diff"> Rate matrix R (parameters restricted to selected model):</span>
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -148,7 +148,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="diff"> Nucleotide frequencies (estimated from data set):</span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span></span>
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="diff"> 8</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -195,7 +195,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="diff"><span class="p">@@ -239,40 +239,40 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="diff"><span class="p">@@ -239,40 +239,40 @@</span></span>
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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<pre style="margin: 0;"> <span id="LC200" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -261,7 +261,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC262" class="line" lang="diff"> (1 other less frequent bipartitions not shown)</span>
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC264" class="line" lang="diff"><span class="p">@@ -301,22 +301,22 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="diff"><span class="p">@@ -301,22 +301,22 @@</span></span>
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC266" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC267" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -295,7 +295,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC297" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS OF CONSENSUS TREE (WITH CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC298" class="line" lang="diff"><span class="p">@@ -350,30 +350,30 @@</span><span class="idiff left right"> If the automatic search misplaces the ro</span></span>
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="diff"><span class="p">@@ -350,30 +350,30 @@</span></span>
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="diff"> Tree drawn as unrooted tree for better comparison with non-clock tree!</span>
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="diff"> branch length nc/c branch length nc/c (= non-clock/clock)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -345,7 +345,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC345" class="line" lang="diff"> MOLECULAR CLOCK LIKELIHOOD RATIO TEST</span>
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<pre style="margin: 0;"> <span id="LC346" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-hky-clock-nucl</span></span>
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<pre style="margin: 0;"> <span id="LC347" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-hky-clock-nucl</span></span>
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<pre style="margin: 0;">-<span id="LC348" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span><span class="idiff left right"> Transition/transversion parameter (estim</span></span>
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span></span>
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<pre style="margin: 0;"> <span id="LC349" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC350" class="line" lang="diff"> Rate matrix R (parameters restricted to selected model):</span>
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<pre style="margin: 0;"> <span id="LC351" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -364,7 +364,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC364" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC365" class="line" lang="diff"> Nucleotide frequencies (estimated from data set):</span>
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<pre style="margin: 0;"> <span id="LC366" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC367" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span></span>
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<pre style="margin: 0;"> <span id="LC368" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC369" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC370" class="line" lang="diff"> 8</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -411,7 +411,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC413" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="diff"><span class="p">@@ -239,40 +239,40 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="diff"><span class="p">@@ -239,40 +239,40 @@</span></span>
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<pre style="margin: 0;"> <span id="LC415" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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<pre style="margin: 0;"> <span id="LC416" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -477,7 +477,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC477" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC478" class="line" lang="diff"> (1 other less frequent bipartitions not shown)</span>
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<pre style="margin: 0;"> <span id="LC479" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="diff"><span class="p">@@ -301,22 +301,22 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="diff"><span class="p">@@ -301,22 +301,22 @@</span></span>
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<pre style="margin: 0;"> <span id="LC481" class="line" lang="diff"> </span>
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482
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<pre style="margin: 0;"> <span id="LC482" class="line" lang="diff"> </span>
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483
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<pre style="margin: 0;"> <span id="LC483" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -511,7 +511,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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511
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<pre style="margin: 0;"> <span id="LC511" class="line" lang="diff"> </span>
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512
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<pre style="margin: 0;"> <span id="LC512" class="line" lang="diff"> </span>
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513
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513
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<pre style="margin: 0;"> <span id="LC513" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS OF CONSENSUS TREE (WITH CLOCK)</span>
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514
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="diff"><span class="p">@@ -350,30 +350,30 @@</span><span class="idiff left right"> If the automatic search misplaces the ro</span></span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="diff"><span class="p">@@ -350,30 +350,30 @@</span></span>
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515
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515
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<pre style="margin: 0;"> <span id="LC515" class="line" lang="diff"> Tree drawn as unrooted tree for better comparison with non-clock tree!</span>
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516
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516
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<pre style="margin: 0;"> <span id="LC516" class="line" lang="diff"> </span>
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517
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<pre style="margin: 0;"> <span id="LC517" class="line" lang="diff"> branch length nc/c branch length nc/c (= non-clock/clock)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -561,7 +561,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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561
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561
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<pre style="margin: 0;"> <span id="LC561" class="line" lang="diff"> MOLECULAR CLOCK LIKELIHOOD RATIO TEST</span>
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562
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562
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<pre style="margin: 0;"> <span id="LC562" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-hky-rhet-clock-nucl</span></span>
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<pre style="margin: 0;"> <span id="LC563" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-hky-rhet-clock-nucl</span></span>
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span><span class="idiff left right"> Transition/transversion parameter (estim</span></span>
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span></span>
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<pre style="margin: 0;"> <span id="LC565" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC566" class="line" lang="diff"> Rate matrix R (parameters restricted to selected model):</span>
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567
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<pre style="margin: 0;"> <span id="LC567" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -580,7 +580,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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580
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580
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<pre style="margin: 0;"> <span id="LC580" class="line" lang="diff"> </span>
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581
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<pre style="margin: 0;"> <span id="LC581" class="line" lang="diff"> Nucleotide frequencies (estimated from data set):</span>
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582
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582
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<pre style="margin: 0;"> <span id="LC582" class="line" lang="diff"> </span>
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583
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<pre style="margin: 0;">-<span id="LC583" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span></span>
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<pre style="margin: 0;"> <span id="LC584" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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585
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585
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<pre style="margin: 0;"> <span id="LC585" class="line" lang="diff"> </span>
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586
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<pre style="margin: 0;"> <span id="LC586" class="line" lang="diff"> 8</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -627,7 +627,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC627" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC628" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC629" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC630" class="line" lang="diff"><span class="p">@@ -157,10 +157,10 @@</span><span class="idiff left right"> Number of Gamma rate categories: 4</span></span>
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="diff"><span class="p">@@ -157,10 +157,10 @@</span></span>
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<pre style="margin: 0;"> <span id="LC631" class="line" lang="diff"> Rates and their respective probabilities used in the likelihood function:</span>
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<pre style="margin: 0;"> <span id="LC632" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC633" class="line" lang="diff"> Category Relative rate Probability</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -642,7 +642,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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642
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<pre style="margin: 0;"> <span id="LC642" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC643" class="line" lang="diff"> Categories 1-4 approximate a continuous Gamma-distribution with expectation 1</span>
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<pre style="margin: 0;"> <span id="LC644" class="line" lang="diff"> and variance 3.91.</span>
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<pre style="margin: 0;">-<span id="LC645" class="line" lang="diff"><span class="p">@@ -260,40 +260,40 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="diff"><span class="p">@@ -260,40 +260,40 @@</span></span>
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<pre style="margin: 0;"> <span id="LC646" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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647
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<pre style="margin: 0;"> <span id="LC647" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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<pre style="margin: 0;"> <span id="LC648" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -708,7 +708,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC708" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC709" class="line" lang="diff"> (29 other less frequent bipartitions not shown)</span>
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710
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710
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<pre style="margin: 0;"> <span id="LC710" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC711" class="line" lang="diff"><span class="p">@@ -322,14 +322,14 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC711" class="line" lang="diff"><span class="p">@@ -322,14 +322,14 @@</span></span>
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<pre style="margin: 0;"> <span id="LC712" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC713" class="line" lang="diff"> </span>
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714
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<pre style="margin: 0;"> <span id="LC714" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -731,7 +731,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC731" class="line" lang="diff"> </span>
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732
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<pre style="margin: 0;"> <span id="LC732" class="line" lang="diff"> WARNING --- at least one branch length is close to an internal boundary!</span>
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733
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733
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<pre style="margin: 0;"> <span id="LC733" class="line" lang="diff"> </span>
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734
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<pre style="margin: 0;">-<span id="LC734" class="line" lang="diff"><span class="p">@@ -337,9 +337,9 @@</span><span class="idiff left right"> WARNING --- at least one branch length i</span></span>
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<pre style="margin: 0;">+<span id="LC734" class="line" lang="diff"><span class="p">@@ -337,9 +337,9 @@</span></span>
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735
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<pre style="margin: 0;"> <span id="LC735" class="line" lang="diff"> Consensus tree with maximum likelihood branch lengths</span>
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736
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<pre style="margin: 0;"> <span id="LC736" class="line" lang="diff"> (in CLUSTAL W notation):</span>
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737
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<pre style="margin: 0;"> <span id="LC737" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -744,7 +744,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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744
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744
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<pre style="margin: 0;"> <span id="LC744" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC745" class="line" lang="diff"> </span>
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746
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746
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<pre style="margin: 0;"> <span id="LC746" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS OF CONSENSUS TREE (WITH CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC747" class="line" lang="diff"><span class="p">@@ -373,29 +373,29 @@</span><span class="idiff left right"> If the automatic search misplaces the ro</span></span>
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="diff"><span class="p">@@ -373,29 +373,29 @@</span></span>
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748
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<pre style="margin: 0;"> <span id="LC748" class="line" lang="diff"> Tree drawn as unrooted tree for better comparison with non-clock tree!</span>
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749
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<pre style="margin: 0;"> <span id="LC749" class="line" lang="diff"> </span>
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750
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750
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<pre style="margin: 0;"> <span id="LC750" class="line" lang="diff"> branch length nc/c branch length nc/c (= non-clock/clock)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -792,7 +792,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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792
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<pre style="margin: 0;"> <span id="LC792" class="line" lang="diff"> MOLECULAR CLOCK LIKELIHOOD RATIO TEST</span>
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793
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<pre style="margin: 0;"> <span id="LC793" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-hky-rhet-nucl</span></span>
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794
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794
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<pre style="margin: 0;"> <span id="LC794" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-hky-rhet-nucl</span></span>
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<pre style="margin: 0;">-<span id="LC795" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span><span class="idiff left right"> Transition/transversion parameter (estim</span></span>
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<pre style="margin: 0;">+<span id="LC795" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span></span>
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796
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<pre style="margin: 0;"> <span id="LC796" class="line" lang="diff"> </span>
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797
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<pre style="margin: 0;"> <span id="LC797" class="line" lang="diff"> Rate matrix R (parameters restricted to selected model):</span>
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798
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<pre style="margin: 0;"> <span id="LC798" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -811,7 +811,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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811
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811
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<pre style="margin: 0;"> <span id="LC811" class="line" lang="diff"> </span>
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812
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812
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<pre style="margin: 0;"> <span id="LC812" class="line" lang="diff"> Nucleotide frequencies (estimated from data set):</span>
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813
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813
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<pre style="margin: 0;"> <span id="LC813" class="line" lang="diff"> </span>
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814
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<pre style="margin: 0;">-<span id="LC814" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC814" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span></span>
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<pre style="margin: 0;"> <span id="LC815" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC816" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC817" class="line" lang="diff"> 8</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -858,7 +858,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC858" class="line" lang="diff"> </span>
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859
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<pre style="margin: 0;"> <span id="LC859" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC860" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC861" class="line" lang="diff"><span class="p">@@ -157,10 +157,10 @@</span><span class="idiff left right"> Number of Gamma rate categories: 4</span></span>
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<pre style="margin: 0;">+<span id="LC861" class="line" lang="diff"><span class="p">@@ -157,10 +157,10 @@</span></span>
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<pre style="margin: 0;"> <span id="LC862" class="line" lang="diff"> Rates and their respective probabilities used in the likelihood function:</span>
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863
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<pre style="margin: 0;"> <span id="LC863" class="line" lang="diff"> </span>
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864
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<pre style="margin: 0;"> <span id="LC864" class="line" lang="diff"> Category Relative rate Probability</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -873,7 +873,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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873
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<pre style="margin: 0;"> <span id="LC873" class="line" lang="diff"> </span>
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874
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<pre style="margin: 0;"> <span id="LC874" class="line" lang="diff"> Categories 1-4 approximate a continuous Gamma-distribution with expectation 1</span>
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875
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<pre style="margin: 0;"> <span id="LC875" class="line" lang="diff"> and variance 3.91.</span>
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876
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<pre style="margin: 0;">-<span id="LC876" class="line" lang="diff"><span class="p">@@ -260,40 +260,40 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC876" class="line" lang="diff"><span class="p">@@ -260,40 +260,40 @@</span></span>
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<pre style="margin: 0;"> <span id="LC877" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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<pre style="margin: 0;"> <span id="LC878" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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879
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<pre style="margin: 0;"> <span id="LC879" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -939,7 +939,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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939
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939
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<pre style="margin: 0;"> <span id="LC939" class="line" lang="diff"> </span>
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940
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<pre style="margin: 0;"> <span id="LC940" class="line" lang="diff"> (29 other less frequent bipartitions not shown)</span>
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941
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941
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<pre style="margin: 0;"> <span id="LC941" class="line" lang="diff"> </span>
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942
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<pre style="margin: 0;">-<span id="LC942" class="line" lang="diff"><span class="p">@@ -322,14 +322,14 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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942
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<pre style="margin: 0;">+<span id="LC942" class="line" lang="diff"><span class="p">@@ -322,14 +322,14 @@</span></span>
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943
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943
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<pre style="margin: 0;"> <span id="LC943" class="line" lang="diff"> </span>
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944
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944
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<pre style="margin: 0;"> <span id="LC944" class="line" lang="diff"> </span>
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945
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945
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<pre style="margin: 0;"> <span id="LC945" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -962,7 +962,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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962
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962
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<pre style="margin: 0;"> <span id="LC962" class="line" lang="diff"> </span>
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963
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963
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<pre style="margin: 0;"> <span id="LC963" class="line" lang="diff"> WARNING --- at least one branch length is close to an internal boundary!</span>
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964
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964
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<pre style="margin: 0;"> <span id="LC964" class="line" lang="diff"> </span>
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965
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<pre style="margin: 0;">-<span id="LC965" class="line" lang="diff"><span class="p">@@ -337,9 +337,9 @@</span><span class="idiff left right"> WARNING --- at least one branch length i</span></span>
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965
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<pre style="margin: 0;">+<span id="LC965" class="line" lang="diff"><span class="p">@@ -337,9 +337,9 @@</span></span>
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966
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966
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<pre style="margin: 0;"> <span id="LC966" class="line" lang="diff"> Consensus tree with maximum likelihood branch lengths</span>
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967
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967
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<pre style="margin: 0;"> <span id="LC967" class="line" lang="diff"> (in CLUSTAL W notation):</span>
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968
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968
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<pre style="margin: 0;"> <span id="LC968" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -977,7 +977,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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977
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977
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<pre style="margin: 0;"> <span id="LC977" class="line" lang="diff"> TIME STAMP</span>
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978
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978
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<pre style="margin: 0;"> <span id="LC978" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-jtt-prot</span></span>
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979
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979
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<pre style="margin: 0;"> <span id="LC979" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-jtt-prot</span></span>
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980
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<pre style="margin: 0;">-<span id="LC980" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC980" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC981" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC982" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC983" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1006,7 +1006,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1006
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1006
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<pre style="margin: 0;"> <span id="LC1006" class="line" lang="diff"> </span>
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1007
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<pre style="margin: 0;"> <span id="LC1007" class="line" lang="diff"> </span>
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1008
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<pre style="margin: 0;"> <span id="LC1008" class="line" lang="diff"> RATE HETEROGENEITY</span>
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1009
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<pre style="margin: 0;">-<span id="LC1009" class="line" lang="diff"><span class="p">@@ -229,21 +229,21 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC1009" class="line" lang="diff"><span class="p">@@ -229,21 +229,21 @@</span></span>
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1010
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1010
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<pre style="margin: 0;"> <span id="LC1010" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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1011
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1011
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<pre style="margin: 0;"> <span id="LC1011" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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1012
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1012
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<pre style="margin: 0;"> <span id="LC1012" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1034,7 +1034,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1034
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1034
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<pre style="margin: 0;"> <span id="LC1034" class="line" lang="diff"> </span>
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1035
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1035
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<pre style="margin: 0;"> <span id="LC1035" class="line" lang="diff"> </span>
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1036
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1036
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<pre style="margin: 0;"> <span id="LC1036" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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1037
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<pre style="margin: 0;">-<span id="LC1037" class="line" lang="diff"><span class="p">@@ -268,21 +268,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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1037
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<pre style="margin: 0;">+<span id="LC1037" class="line" lang="diff"><span class="p">@@ -268,21 +268,21 @@</span></span>
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1038
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1038
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<pre style="margin: 0;"> <span id="LC1038" class="line" lang="diff"> </span>
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1039
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1039
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<pre style="margin: 0;"> <span id="LC1039" class="line" lang="diff"> </span>
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1040
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1040
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<pre style="margin: 0;"> <span id="LC1040" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1068,7 +1068,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1068
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1068
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<pre style="margin: 0;"> <span id="LC1068" class="line" lang="diff"> TIME STAMP</span>
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1069
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<pre style="margin: 0;"> <span id="LC1069" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-jtt-rhet-clock-prot</span></span>
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1070
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1070
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<pre style="margin: 0;"> <span id="LC1070" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-jtt-rhet-clock-prot</span></span>
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<pre style="margin: 0;">-<span id="LC1071" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC1071" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1072" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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1073
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1073
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<pre style="margin: 0;"> <span id="LC1073" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1074" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1097,7 +1097,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1097" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1098" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1099" class="line" lang="diff"> RATE HETEROGENEITY</span>
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1100
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<pre style="margin: 0;">-<span id="LC1100" class="line" lang="diff"><span class="p">@@ -150,10 +150,10 @@</span><span class="idiff left right"> Number of Gamma rate categories: 4</span></span>
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1100
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<pre style="margin: 0;">+<span id="LC1100" class="line" lang="diff"><span class="p">@@ -150,10 +150,10 @@</span></span>
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1101
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<pre style="margin: 0;"> <span id="LC1101" class="line" lang="diff"> Rates and their respective probabilities used in the likelihood function:</span>
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<pre style="margin: 0;"> <span id="LC1102" class="line" lang="diff"> </span>
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1103
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<pre style="margin: 0;"> <span id="LC1103" class="line" lang="diff"> Category Relative rate Probability</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1112,7 +1112,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1112
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1112
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<pre style="margin: 0;"> <span id="LC1112" class="line" lang="diff"> </span>
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1113
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1113
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<pre style="margin: 0;"> <span id="LC1113" class="line" lang="diff"> Categories 1-4 approximate a continuous Gamma-distribution with expectation 1</span>
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1114
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1114
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<pre style="margin: 0;"> <span id="LC1114" class="line" lang="diff"> and variance 0.40.</span>
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1115
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<pre style="margin: 0;">-<span id="LC1115" class="line" lang="diff"><span class="p">@@ -251,21 +251,21 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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1115
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<pre style="margin: 0;">+<span id="LC1115" class="line" lang="diff"><span class="p">@@ -251,21 +251,21 @@</span></span>
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1116
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1116
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<pre style="margin: 0;"> <span id="LC1116" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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1117
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1117
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<pre style="margin: 0;"> <span id="LC1117" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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1118
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1118
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<pre style="margin: 0;"> <span id="LC1118" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1140,7 +1140,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1140" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1141" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1142" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC1143" class="line" lang="diff"><span class="p">@@ -290,21 +290,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC1143" class="line" lang="diff"><span class="p">@@ -290,21 +290,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1144" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1145" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1146" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1172,7 +1172,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1172" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1173" class="line" lang="diff"> </span>
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1174
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<pre style="margin: 0;"> <span id="LC1174" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS OF CONSENSUS TREE (WITH CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC1175" class="line" lang="diff"><span class="p">@@ -336,28 +336,28 @@</span><span class="idiff left right"> If the automatic search misplaces the ro</span></span>
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<pre style="margin: 0;">+<span id="LC1175" class="line" lang="diff"><span class="p">@@ -336,28 +336,28 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1176" class="line" lang="diff"> Tree drawn as unrooted tree for better comparison with non-clock tree!</span>
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1177
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<pre style="margin: 0;"> <span id="LC1177" class="line" lang="diff"> </span>
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1178
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<pre style="margin: 0;"> <span id="LC1178" class="line" lang="diff"> branch length nc/c branch length nc/c (= non-clock/clock)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1218,7 +1218,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1218
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<pre style="margin: 0;"> <span id="LC1218" class="line" lang="diff"> MOLECULAR CLOCK LIKELIHOOD RATIO TEST</span>
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1219
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<pre style="margin: 0;"> <span id="LC1219" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-jtt-rhet-prot</span></span>
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1220
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1220
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<pre style="margin: 0;"> <span id="LC1220" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-jtt-rhet-prot</span></span>
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1221
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<pre style="margin: 0;">-<span id="LC1221" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC1221" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1222" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC1223" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1224" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1247,7 +1247,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1247" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1248" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1249" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC1250" class="line" lang="diff"><span class="p">@@ -150,10 +150,10 @@</span><span class="idiff left right"> Number of Gamma rate categories: 4</span></span>
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1250
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<pre style="margin: 0;">+<span id="LC1250" class="line" lang="diff"><span class="p">@@ -150,10 +150,10 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1251" class="line" lang="diff"> Rates and their respective probabilities used in the likelihood function:</span>
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1252
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1252
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<pre style="margin: 0;"> <span id="LC1252" class="line" lang="diff"> </span>
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1253
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1253
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<pre style="margin: 0;"> <span id="LC1253" class="line" lang="diff"> Category Relative rate Probability</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1262,7 +1262,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1262
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1262
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<pre style="margin: 0;"> <span id="LC1262" class="line" lang="diff"> </span>
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1263
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<pre style="margin: 0;"> <span id="LC1263" class="line" lang="diff"> Categories 1-4 approximate a continuous Gamma-distribution with expectation 1</span>
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1264
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1264
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<pre style="margin: 0;"> <span id="LC1264" class="line" lang="diff"> and variance 0.40.</span>
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1265
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<pre style="margin: 0;">-<span id="LC1265" class="line" lang="diff"><span class="p">@@ -251,21 +251,21 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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1265
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<pre style="margin: 0;">+<span id="LC1265" class="line" lang="diff"><span class="p">@@ -251,21 +251,21 @@</span></span>
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1266
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1266
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<pre style="margin: 0;"> <span id="LC1266" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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1267
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1267
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<pre style="margin: 0;"> <span id="LC1267" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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1268
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1268
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<pre style="margin: 0;"> <span id="LC1268" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1290,7 +1290,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1290
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<pre style="margin: 0;"> <span id="LC1290" class="line" lang="diff"> </span>
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1291
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1291
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<pre style="margin: 0;"> <span id="LC1291" class="line" lang="diff"> </span>
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1292
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1292
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<pre style="margin: 0;"> <span id="LC1292" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC1293" class="line" lang="diff"><span class="p">@@ -290,21 +290,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC1293" class="line" lang="diff"><span class="p">@@ -290,21 +290,21 @@</span></span>
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1294
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<pre style="margin: 0;"> <span id="LC1294" class="line" lang="diff"> </span>
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1295
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<pre style="margin: 0;"> <span id="LC1295" class="line" lang="diff"> </span>
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1296
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<pre style="margin: 0;"> <span id="LC1296" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1324,7 +1324,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1324" class="line" lang="diff"> TIME STAMP</span>
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1325
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<pre style="margin: 0;"> <span id="LC1325" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-mtrev-prot</span></span>
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1326
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1326
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<pre style="margin: 0;"> <span id="LC1326" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-mtrev-prot</span></span>
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<pre style="margin: 0;">-<span id="LC1327" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC1327" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1328" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC1329" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1330" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1353,7 +1353,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1353
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<pre style="margin: 0;"> <span id="LC1353" class="line" lang="diff"> </span>
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1354
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<pre style="margin: 0;"> <span id="LC1354" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1355" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC1356" class="line" lang="diff"><span class="p">@@ -229,24 +229,24 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC1356" class="line" lang="diff"><span class="p">@@ -229,24 +229,24 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1357" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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<pre style="margin: 0;"> <span id="LC1358" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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<pre style="margin: 0;"> <span id="LC1359" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1387,7 +1387,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1387
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<pre style="margin: 0;"> <span id="LC1387" class="line" lang="diff"> </span>
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1388
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<pre style="margin: 0;"> <span id="LC1388" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1389" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC1390" class="line" lang="diff"><span class="p">@@ -271,21 +271,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC1390" class="line" lang="diff"><span class="p">@@ -271,21 +271,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1391" class="line" lang="diff"> </span>
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1392
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<pre style="margin: 0;"> <span id="LC1392" class="line" lang="diff"> </span>
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1393
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1393
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<pre style="margin: 0;"> <span id="LC1393" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1421,7 +1421,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1421
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<pre style="margin: 0;"> <span id="LC1421" class="line" lang="diff"> TIME STAMP</span>
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<pre style="margin: 0;"> <span id="LC1422" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-pure-bin</span></span>
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1423
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<pre style="margin: 0;"> <span id="LC1423" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-pure-bin</span></span>
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<pre style="margin: 0;">-<span id="LC1424" class="line" lang="diff"><span class="p">@@ -101,15 +101,15 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC1424" class="line" lang="diff"><span class="p">@@ -101,15 +101,15 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1425" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC1426" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1427" class="line" lang="diff"> 5</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1446,7 +1446,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1446
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<pre style="margin: 0;"> <span id="LC1446" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1447" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1448" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC1449" class="line" lang="diff"><span class="p">@@ -193,8 +193,8 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC1449" class="line" lang="diff"><span class="p">@@ -193,8 +193,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1450" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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<pre style="margin: 0;"> <span id="LC1451" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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<pre style="margin: 0;"> <span id="LC1452" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1457,7 +1457,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1457
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<pre style="margin: 0;"> <span id="LC1457" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1458" class="line" lang="diff"> Congruent bipartitions occurred in 50% or less, not included in </span>
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<pre style="margin: 0;"> <span id="LC1459" class="line" lang="diff"> the consensus tree:</span>
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<pre style="margin: 0;">-<span id="LC1460" class="line" lang="diff"><span class="p">@@ -221,18 +221,18 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC1460" class="line" lang="diff"><span class="p">@@ -221,18 +221,18 @@</span></span>
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1461
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<pre style="margin: 0;"> <span id="LC1461" class="line" lang="diff"> </span>
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1462
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<pre style="margin: 0;"> <span id="LC1462" class="line" lang="diff"> </span>
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1463
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1463
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<pre style="margin: 0;"> <span id="LC1463" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1485,7 +1485,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1485
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1485
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<pre style="margin: 0;"> <span id="LC1485" class="line" lang="diff"> TIME STAMP</span>
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1486
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<pre style="margin: 0;"> <span id="LC1486" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-pure-nucl</span></span>
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1487
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1487
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<pre style="margin: 0;"> <span id="LC1487" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-pure-nucl</span></span>
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1488
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<pre style="margin: 0;">-<span id="LC1488" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span><span class="idiff left right"> Transition/transversion parameter (estim</span></span>
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<pre style="margin: 0;">+<span id="LC1488" class="line" lang="diff"><span class="p">@@ -52,12 +52,12 @@</span></span>
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1489
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<pre style="margin: 0;"> <span id="LC1489" class="line" lang="diff"> </span>
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1490
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1490
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<pre style="margin: 0;"> <span id="LC1490" class="line" lang="diff"> Rate matrix R (parameters restricted to selected model):</span>
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1491
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<pre style="margin: 0;"> <span id="LC1491" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1504,7 +1504,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1504
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1504
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<pre style="margin: 0;"> <span id="LC1504" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1505" class="line" lang="diff"> Nucleotide frequencies (estimated from data set):</span>
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1506
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<pre style="margin: 0;"> <span id="LC1506" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC1507" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC1507" class="line" lang="diff"><span class="p">@@ -126,26 +126,26 @@</span></span>
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1508
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<pre style="margin: 0;"> <span id="LC1508" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC1509" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1510" class="line" lang="diff"> 8</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1551,7 +1551,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1551
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<pre style="margin: 0;"> <span id="LC1551" class="line" lang="diff"> </span>
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1552
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1552
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<pre style="margin: 0;"> <span id="LC1552" class="line" lang="diff"> </span>
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1553
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<pre style="margin: 0;"> <span id="LC1553" class="line" lang="diff"> RATE HETEROGENEITY</span>
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1554
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<pre style="margin: 0;">-<span id="LC1554" class="line" lang="diff"><span class="p">@@ -239,40 +239,40 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC1554" class="line" lang="diff"><span class="p">@@ -239,40 +239,40 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1555" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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<pre style="margin: 0;"> <span id="LC1556" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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1557
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<pre style="margin: 0;"> <span id="LC1557" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1617,7 +1617,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1617
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<pre style="margin: 0;"> <span id="LC1617" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1618" class="line" lang="diff"> (1 other less frequent bipartitions not shown)</span>
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1619
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<pre style="margin: 0;"> <span id="LC1619" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC1620" class="line" lang="diff"><span class="p">@@ -301,22 +301,22 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC1620" class="line" lang="diff"><span class="p">@@ -301,22 +301,22 @@</span></span>
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1621
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<pre style="margin: 0;"> <span id="LC1621" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1622" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1623" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1653,7 +1653,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1653
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1653
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<pre style="margin: 0;"> <span id="LC1653" class="line" lang="diff"> TIME STAMP</span>
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1654
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<pre style="margin: 0;"> <span id="LC1654" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-pure-prot</span></span>
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1655
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<pre style="margin: 0;"> <span id="LC1655" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-pure-prot</span></span>
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<pre style="margin: 0;">-<span id="LC1656" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC1656" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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1657
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<pre style="margin: 0;"> <span id="LC1657" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC1658" class="line" lang="diff"> </span>
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1659
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<pre style="margin: 0;"> <span id="LC1659" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1682,7 +1682,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1682
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<pre style="margin: 0;"> <span id="LC1682" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1683" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1684" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC1685" class="line" lang="diff"><span class="p">@@ -229,10 +229,10 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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1685
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<pre style="margin: 0;">+<span id="LC1685" class="line" lang="diff"><span class="p">@@ -229,10 +229,10 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1686" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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1687
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<pre style="margin: 0;"> <span id="LC1687" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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1688
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<pre style="margin: 0;"> <span id="LC1688" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1697,7 +1697,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1697
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1697
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<pre style="margin: 0;"> <span id="LC1697" class="line" lang="diff"> </span>
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1698
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<pre style="margin: 0;"> <span id="LC1698" class="line" lang="diff"> Congruent bipartitions occurred in 50% or less, not included in </span>
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1699
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<pre style="margin: 0;"> <span id="LC1699" class="line" lang="diff"> the consensus tree:</span>
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<pre style="margin: 0;">-<span id="LC1700" class="line" lang="diff"><span class="p">@@ -243,8 +243,8 @@</span><span class="idiff left right"> the consensus tree:</span></span>
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<pre style="margin: 0;">+<span id="LC1700" class="line" lang="diff"><span class="p">@@ -243,8 +243,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1701" class="line" lang="diff"> Incongruent bipartitions not included in the consensus tree:</span>
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<pre style="margin: 0;"> <span id="LC1702" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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<pre style="margin: 0;"> <span id="LC1703" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1708,7 +1708,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1708
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1708
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<pre style="margin: 0;"> <span id="LC1708" class="line" lang="diff"> </span>
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1709
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<pre style="margin: 0;"> <span id="LC1709" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1710" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC1711" class="line" lang="diff"><span class="p">@@ -269,21 +269,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC1711" class="line" lang="diff"><span class="p">@@ -269,21 +269,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1712" class="line" lang="diff"> </span>
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1713
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<pre style="margin: 0;"> <span id="LC1713" class="line" lang="diff"> </span>
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1714
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<pre style="margin: 0;"> <span id="LC1714" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1742,7 +1742,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1742
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1742
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<pre style="margin: 0;"> <span id="LC1742" class="line" lang="diff"> TIME STAMP</span>
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1743
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<pre style="margin: 0;"> <span id="LC1743" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-tn-nucl</span></span>
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<pre style="margin: 0;"> <span id="LC1744" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-tn-nucl</span></span>
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<pre style="margin: 0;">-<span id="LC1745" class="line" lang="diff"><span class="p">@@ -53,12 +53,12 @@</span><span class="idiff left right"> Y/R transition parameter (estimated from</span></span>
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<pre style="margin: 0;">+<span id="LC1745" class="line" lang="diff"><span class="p">@@ -53,12 +53,12 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1746" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1747" class="line" lang="diff"> Rate matrix R (parameters restricted to selected model):</span>
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<pre style="margin: 0;"> <span id="LC1748" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1761,7 +1761,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1761" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1762" class="line" lang="diff"> Nucleotide frequencies (estimated from data set):</span>
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<pre style="margin: 0;"> <span id="LC1763" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC1764" class="line" lang="diff"><span class="p">@@ -127,26 +127,26 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC1764" class="line" lang="diff"><span class="p">@@ -127,26 +127,26 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1765" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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<pre style="margin: 0;"> <span id="LC1766" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1767" class="line" lang="diff"> 8</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1808,7 +1808,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1808" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1809" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1810" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC1811" class="line" lang="diff"><span class="p">@@ -240,11 +240,11 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC1811" class="line" lang="diff"><span class="p">@@ -240,11 +240,11 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1812" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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<pre style="margin: 0;"> <span id="LC1813" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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<pre style="margin: 0;"> <span id="LC1814" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1825,7 +1825,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC1825" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1826" class="line" lang="diff"> Congruent bipartitions occurred in 50% or less, not included in </span>
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<pre style="margin: 0;"> <span id="LC1827" class="line" lang="diff"> the consensus tree:</span>
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<pre style="margin: 0;">-<span id="LC1828" class="line" lang="diff"><span class="p">@@ -255,26 +255,26 @@</span><span class="idiff left right"> the consensus tree:</span></span>
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<pre style="margin: 0;">+<span id="LC1828" class="line" lang="diff"><span class="p">@@ -255,26 +255,26 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1829" class="line" lang="diff"> Incongruent bipartitions not included in the consensus tree:</span>
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1830
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<pre style="margin: 0;"> <span id="LC1830" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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1831
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<pre style="margin: 0;"> <span id="LC1831" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1872,7 +1872,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1872
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<pre style="margin: 0;"> <span id="LC1872" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC1873" class="line" lang="diff"> (2 other less frequent bipartitions not shown)</span>
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1874
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<pre style="margin: 0;"> <span id="LC1874" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC1875" class="line" lang="diff"><span class="p">@@ -303,22 +303,22 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC1875" class="line" lang="diff"><span class="p">@@ -303,22 +303,22 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1876" class="line" lang="diff"> </span>
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1877
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<pre style="margin: 0;"> <span id="LC1877" class="line" lang="diff"> </span>
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1878
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<pre style="margin: 0;"> <span id="LC1878" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1908,7 +1908,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1908
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1908
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<pre style="margin: 0;"> <span id="LC1908" class="line" lang="diff"> TIME STAMP</span>
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1909
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1909
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<pre style="margin: 0;"> <span id="LC1909" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-vt-prot</span></span>
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1910
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1910
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<pre style="margin: 0;"> <span id="LC1910" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-vt-prot</span></span>
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1911
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<pre style="margin: 0;">-<span id="LC1911" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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1911
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<pre style="margin: 0;">+<span id="LC1911" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC1912" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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1913
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1913
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<pre style="margin: 0;"> <span id="LC1913" class="line" lang="diff"> </span>
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1914
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1914
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<pre style="margin: 0;"> <span id="LC1914" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1937,7 +1937,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1937
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1937
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<pre style="margin: 0;"> <span id="LC1937" class="line" lang="diff"> </span>
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1938
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1938
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<pre style="margin: 0;"> <span id="LC1938" class="line" lang="diff"> </span>
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1939
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1939
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<pre style="margin: 0;"> <span id="LC1939" class="line" lang="diff"> RATE HETEROGENEITY</span>
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1940
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<pre style="margin: 0;">-<span id="LC1940" class="line" lang="diff"><span class="p">@@ -229,21 +229,21 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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1940
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<pre style="margin: 0;">+<span id="LC1940" class="line" lang="diff"><span class="p">@@ -229,21 +229,21 @@</span></span>
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1941
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1941
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<pre style="margin: 0;"> <span id="LC1941" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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1942
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1942
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<pre style="margin: 0;"> <span id="LC1942" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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1943
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1943
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<pre style="margin: 0;"> <span id="LC1943" class="line" lang="diff"> </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1965" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1965" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1965,7 +1965,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1965
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1965
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<pre style="margin: 0;"> <span id="LC1965" class="line" lang="diff"> </span>
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1966
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1966
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<pre style="margin: 0;"> <span id="LC1966" class="line" lang="diff"> </span>
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1967
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1967
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<pre style="margin: 0;"> <span id="LC1967" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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1968
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<pre style="margin: 0;">-<span id="LC1968" class="line" lang="diff"><span class="p">@@ -268,21 +268,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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1968
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<pre style="margin: 0;">+<span id="LC1968" class="line" lang="diff"><span class="p">@@ -268,21 +268,21 @@</span></span>
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1969
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1969
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<pre style="margin: 0;"> <span id="LC1969" class="line" lang="diff"> </span>
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1970
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1970
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<pre style="margin: 0;"> <span id="LC1970" class="line" lang="diff"> </span>
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1971
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1971
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<pre style="margin: 0;"> <span id="LC1971" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1999" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1999" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1999,7 +1999,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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1999
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1999
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<pre style="margin: 0;"> <span id="LC1999" class="line" lang="diff"> TIME STAMP</span>
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2000
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2000
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<pre style="margin: 0;"> <span id="LC2000" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-qp-wag-prot</span></span>
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2001
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2001
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<pre style="margin: 0;"> <span id="LC2001" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-qp-wag-prot</span></span>
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2002
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<pre style="margin: 0;">-<span id="LC2002" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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2002
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<pre style="margin: 0;">+<span id="LC2002" class="line" lang="diff"><span class="p">@@ -128,17 +128,17 @@</span></span>
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2003
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2003
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<pre style="margin: 0;"> <span id="LC2003" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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2004
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2004
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<pre style="margin: 0;"> <span id="LC2004" class="line" lang="diff"> </span>
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2005
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2005
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<pre style="margin: 0;"> <span id="LC2005" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2028,7 +2028,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2028
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<pre style="margin: 0;"> <span id="LC2028" class="line" lang="diff"> </span>
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2029
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<pre style="margin: 0;"> <span id="LC2029" class="line" lang="diff"> </span>
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2030
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2030
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<pre style="margin: 0;"> <span id="LC2030" class="line" lang="diff"> RATE HETEROGENEITY</span>
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<pre style="margin: 0;">-<span id="LC2031" class="line" lang="diff"><span class="p">@@ -229,21 +229,21 @@</span><span class="idiff left right"> trees that have been generated in the 10</span></span>
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<pre style="margin: 0;">+<span id="LC2031" class="line" lang="diff"><span class="p">@@ -229,21 +229,21 @@</span></span>
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2032
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2032
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<pre style="margin: 0;"> <span id="LC2032" class="line" lang="diff"> Bipartitions included in the quartet puzzling tree:</span>
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2033
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2033
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<pre style="margin: 0;"> <span id="LC2033" class="line" lang="diff"> (bipartition with sequences in input order : number of times seen (and ratio))</span>
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2034
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2034
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<pre style="margin: 0;"> <span id="LC2034" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2056,7 +2056,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2056
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2056
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<pre style="margin: 0;"> <span id="LC2056" class="line" lang="diff"> </span>
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2057
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2057
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<pre style="margin: 0;"> <span id="LC2057" class="line" lang="diff"> </span>
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2058
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2058
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<pre style="margin: 0;"> <span id="LC2058" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS ON CONSENSUS TREE (NO CLOCK)</span>
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2059
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<pre style="margin: 0;">-<span id="LC2059" class="line" lang="diff"><span class="p">@@ -268,21 +268,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC2059" class="line" lang="diff"><span class="p">@@ -268,21 +268,21 @@</span></span>
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2060
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2060
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<pre style="margin: 0;"> <span id="LC2060" class="line" lang="diff"> </span>
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2061
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2061
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<pre style="margin: 0;"> <span id="LC2061" class="line" lang="diff"> </span>
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2062
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2062
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<pre style="margin: 0;"> <span id="LC2062" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2090,7 +2090,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2090
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2090
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<pre style="margin: 0;"> <span id="LC2090" class="line" lang="diff"> TIME STAMP</span>
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2091
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2091
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<pre style="margin: 0;"> <span id="LC2091" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/check-ut-pure-prot</span></span>
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2092
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2092
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<pre style="margin: 0;"> <span id="LC2092" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/check-ut-pure-prot</span></span>
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2093
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<pre style="margin: 0;">-<span id="LC2093" class="line" lang="diff"><span class="p">@@ -129,17 +129,17 @@</span><span class="idiff left right"> Maximum likelihood distances are compute</span></span>
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<pre style="margin: 0;">+<span id="LC2093" class="line" lang="diff"><span class="p">@@ -129,17 +129,17 @@</span></span>
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2094
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2094
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<pre style="margin: 0;"> <span id="LC2094" class="line" lang="diff"> substitution and rate heterogeneity.</span>
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2095
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2095
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<pre style="margin: 0;"> <span id="LC2095" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2096" class="line" lang="diff"> 7</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2119,7 +2119,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2119
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<pre style="margin: 0;"> <span id="LC2119" class="line" lang="diff"> </span>
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2120
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<pre style="margin: 0;"> <span id="LC2120" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2121" class="line" lang="diff"> RATE HETEROGENEITY</span>
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2122
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<pre style="margin: 0;">-<span id="LC2122" class="line" lang="diff"><span class="p">@@ -174,13 +174,13 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC2122" class="line" lang="diff"><span class="p">@@ -174,13 +174,13 @@</span></span>
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2123
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<pre style="margin: 0;"> <span id="LC2123" class="line" lang="diff"> </span>
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2124
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<pre style="margin: 0;"> <span id="LC2124" class="line" lang="diff"> </span>
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2125
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<pre style="margin: 0;"> <span id="LC2125" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2131,7 +2131,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2131
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2131
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<pre style="margin: 0;"> <span id="LC2131" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-GLB5_PETMA 6 0.70107 0.14140 9 iterations until convergence</span></span>
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2132
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2132
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<pre style="margin: 0;"> <span id="LC2132" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LGB2_LUPLU 7 1.76830 0.28198 log L: -1699.50</span></span>
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2133
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2133
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<pre style="margin: 0;"> <span id="LC2133" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+HBB_HUMAN 1 0.04 0.03 8 0.28 0.08</span></span>
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2134
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<pre style="margin: 0;">-<span id="LC2134" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+HBB_HORSE 2 0.12 0.03 9 0.00 <span class="idiff left right">0</span>.00</span></span>
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2134
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<pre style="margin: 0;">+<span id="LC2134" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+HBB_HORSE 2 0.12 0.03 9 0.00 <span class="idiff left right">9</span>.00</span></span>
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2135
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2135
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<pre style="margin: 0;"> <span id="LC2135" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+HBA_HUMAN 3 0.02 0.02 10 0.40 0.12</span></span>
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2136
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2136
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<pre style="margin: 0;"> <span id="LC2136" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+HBA_HORSE 4 0.09 0.03 11 0.60 0.11</span></span>
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2137
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2137
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<pre style="margin: 0;"> <span id="LC2137" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+MYG_PHYCA 5 1.33 0.21</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2140,7 +2140,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2140
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<pre style="margin: 0;"> <span id="LC2140" class="line" lang="diff"> </span>
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2141
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2141
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<pre style="margin: 0;"> <span id="LC2141" class="line" lang="diff"> WARNING --- at least one branch length is close to an internal boundary!</span>
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2142
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2142
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<pre style="margin: 0;"> <span id="LC2142" class="line" lang="diff"> </span>
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2143
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<pre style="margin: 0;">-<span id="LC2143" class="line" lang="diff"><span class="p">@@ -188,9 +188,9 @@</span><span class="idiff left right"> WARNING --- at least one branch length i</span></span>
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<pre style="margin: 0;">+<span id="LC2143" class="line" lang="diff"><span class="p">@@ -188,9 +188,9 @@</span></span>
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<pre style="margin: 0;"> <span id="LC2144" class="line" lang="diff"> Unrooted user defined tree with maximum likelihood branch lengths</span>
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2145
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<pre style="margin: 0;"> <span id="LC2145" class="line" lang="diff"> (in CLUSTAL W notation):</span>
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<pre style="margin: 0;"> <span id="LC2146" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2153,7 +2153,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC2153" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2154" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2155" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS OF USER DEFINED TREE # 2 (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC2156" class="line" lang="diff"><span class="p">@@ -215,21 +215,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC2156" class="line" lang="diff"><span class="p">@@ -215,21 +215,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC2157" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2158" class="line" lang="diff"> </span>
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2159
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<pre style="margin: 0;"> <span id="LC2159" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2185,7 +2185,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC2185" class="line" lang="diff"> </span>
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2186
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<pre style="margin: 0;"> <span id="LC2186" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2187" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS OF USER DEFINED TREE # 3 (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC2188" class="line" lang="diff"><span class="p">@@ -254,21 +254,21 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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<pre style="margin: 0;">+<span id="LC2188" class="line" lang="diff"><span class="p">@@ -254,21 +254,21 @@</span></span>
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<pre style="margin: 0;"> <span id="LC2189" class="line" lang="diff"> </span>
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2190
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<pre style="margin: 0;"> <span id="LC2190" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2191" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2217,7 +2217,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<pre style="margin: 0;"> <span id="LC2217" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2218" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC2219" class="line" lang="diff"> MAXIMUM LIKELIHOOD BRANCH LENGTHS OF USER DEFINED TREE # 4 (NO CLOCK)</span>
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<pre style="margin: 0;">-<span id="LC2220" class="line" lang="diff"><span class="p">@@ -293,30 +293,30 @@</span><span class="idiff left right"> substitution and rate heterogeneity.</span></span>
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2220
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<pre style="margin: 0;">+<span id="LC2220" class="line" lang="diff"><span class="p">@@ -293,30 +293,30 @@</span></span>
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2221
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2221
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<pre style="margin: 0;"> <span id="LC2221" class="line" lang="diff"> </span>
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2222
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2222
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<pre style="margin: 0;"> <span id="LC2222" class="line" lang="diff"> </span>
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2223
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2223
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<pre style="margin: 0;"> <span id="LC2223" class="line" lang="diff"> branch length S.E. branch length S.E.</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2263,7 +2263,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2263
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2263
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<pre style="margin: 0;"> <span id="LC2263" class="line" lang="diff"> 1sKH - one sided KH test based on pairwise SH tests (Shimodaira-Hasegawa</span>
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2264
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2264
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<pre style="margin: 0;"> <span id="LC2264" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/cons-pure-prot.test</span></span>
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2265
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2265
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<pre style="margin: 0;"> <span id="LC2265" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/cons-pure-prot.test</span></span>
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2266
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<pre style="margin: 0;">-<span id="LC2266" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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2266
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<pre style="margin: 0;">+<span id="LC2266" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
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2267
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2267
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<pre style="margin: 0;"> <span id="LC2267" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2268
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2268
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<pre style="margin: 0;"> <span id="LC2268" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2269
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2269
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<pre style="margin: 0;"> <span id="LC2269" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2271,7 +2271,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2271
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2271
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<pre style="margin: 0;"> <span id="LC2271" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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2272
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2272
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<pre style="margin: 0;"> <span id="LC2272" class="line" lang="diff"> exit 0</span>
</pre>
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2273
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2273
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<pre style="margin: 0;"> <span id="LC2273" class="line" lang="diff"> else</span>
</pre>
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2274
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<pre style="margin: 0;">-<span id="LC2274" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
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2274
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<pre style="margin: 0;">+<span id="LC2274" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2275
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2275
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2275" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2276
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2276
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2276" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2277
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2277
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2277" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2281,7 +2281,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2281
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2281
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<pre style="margin: 0;"> <span id="LC2281" class="line" lang="diff"> result=$?</span>
</pre>
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2282
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2282
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<pre style="margin: 0;"> <span id="LC2282" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/lm-pure-prot.test</span></span>
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2283
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2283
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<pre style="margin: 0;"> <span id="LC2283" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/lm-pure-prot.test</span></span>
</pre>
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2284
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<pre style="margin: 0;">-<span id="LC2284" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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2284
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<pre style="margin: 0;">+<span id="LC2284" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2285
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2285
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<pre style="margin: 0;"> <span id="LC2285" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2286
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2286
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<pre style="margin: 0;"> <span id="LC2286" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2287
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2287
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<pre style="margin: 0;"> <span id="LC2287" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2289,7 +2289,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2289
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2289
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<pre style="margin: 0;"> <span id="LC2289" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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2290
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2290
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<pre style="margin: 0;"> <span id="LC2290" class="line" lang="diff"> exit 0</span>
</pre>
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2291
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2291
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<pre style="margin: 0;"> <span id="LC2291" class="line" lang="diff"> else</span>
</pre>
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2292
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<pre style="margin: 0;">-<span id="LC2292" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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2292
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<pre style="margin: 0;">+<span id="LC2292" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2293
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2293
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<pre style="margin: 0;"> <span id="LC2293" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2294
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2294
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<pre style="margin: 0;"> <span id="LC2294" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2295" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2295
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2295
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<pre style="margin: 0;"> <span id="LC2295" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2299,7 +2299,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2299
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2299
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<pre style="margin: 0;"> <span id="LC2299" class="line" lang="diff"> result=$?</span>
</pre>
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2300
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2300
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<pre style="margin: 0;"> <span id="LC2300" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-clock.test</span></span>
</pre>
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2301
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<td class="diff-line-num new_line" data-linenumber="2301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2301
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<pre style="margin: 0;"> <span id="LC2301" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-clock.test</span></span>
</pre>
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2302
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<pre style="margin: 0;">-<span id="LC2302" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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2302
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<pre style="margin: 0;">+<span id="LC2302" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2303
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2303
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<pre style="margin: 0;"> <span id="LC2303" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2304
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2304
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2304" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2305
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2305
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2305" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2307,7 +2307,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2307
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<td class="diff-line-num new_line" data-linenumber="2307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2307
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<pre style="margin: 0;"> <span id="LC2307" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2308
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2308
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<pre style="margin: 0;"> <span id="LC2308" class="line" lang="diff"> exit 0</span>
</pre>
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2309
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<td class="diff-line-num new_line" data-linenumber="2309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2309
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2309" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2310
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<td class="diff-line-num new_line old" data-linenumber="2310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2310" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2310
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<pre style="margin: 0;">+<span id="LC2310" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2311
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<td class="diff-line-num new_line" data-linenumber="2311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2311
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2311" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2312
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<td class="diff-line-num new_line" data-linenumber="2312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2312
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2312" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2313
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<td class="diff-line-num new_line" data-linenumber="2313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2313
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<pre style="margin: 0;"> <span id="LC2313" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2317,7 +2317,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2317
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2317
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<pre style="margin: 0;"> <span id="LC2317" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2318
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<td class="diff-line-num new_line" data-linenumber="2318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2318
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<pre style="margin: 0;"> <span id="LC2318" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-hky-clock-nucl.test</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2319
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2319
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<pre style="margin: 0;"> <span id="LC2319" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-hky-clock-nucl.test</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2320
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<pre style="margin: 0;">-<span id="LC2320" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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2320
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<pre style="margin: 0;">+<span id="LC2320" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2321
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2321
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2321" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2322
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2322
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2322" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2323
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2323
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2323" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2325,7 +2325,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2325
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<td class="diff-line-num new_line" data-linenumber="2325" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2325
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2325" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2326
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<td class="diff-line-num new_line" data-linenumber="2326" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2326
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<pre style="margin: 0;"> <span id="LC2326" class="line" lang="diff"> exit 0</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2327
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<td class="diff-line-num new_line" data-linenumber="2327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2327
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2327" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2328
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<td class="diff-line-num new_line old" data-linenumber="2328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2328" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2328
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<pre style="margin: 0;">+<span id="LC2328" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2329
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<td class="diff-line-num new_line" data-linenumber="2329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2329
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2329" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2330
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<td class="diff-line-num new_line" data-linenumber="2330" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2330
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2330" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2331
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<td class="diff-line-num new_line" data-linenumber="2331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2331
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2331" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2335,7 +2335,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2335
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2335
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<pre style="margin: 0;"> <span id="LC2335" class="line" lang="diff"> result=$?</span>
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2336
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2336
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<pre style="margin: 0;"> <span id="LC2336" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-hky-rhet-clock-nucl.test</span></span>
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2337
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2337
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<pre style="margin: 0;"> <span id="LC2337" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-hky-rhet-clock-nucl.test</span></span>
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2338
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<pre style="margin: 0;">-<span id="LC2338" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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2338
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<pre style="margin: 0;">+<span id="LC2338" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
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2339
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2339
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<pre style="margin: 0;"> <span id="LC2339" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2340
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2340
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<pre style="margin: 0;"> <span id="LC2340" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2341
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2341
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<pre style="margin: 0;"> <span id="LC2341" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2343" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2343,7 +2343,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2343
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2343
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<pre style="margin: 0;"> <span id="LC2343" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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2344
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2344
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<pre style="margin: 0;"> <span id="LC2344" class="line" lang="diff"> exit 0</span>
</pre>
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2345
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2345
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<pre style="margin: 0;"> <span id="LC2345" class="line" lang="diff"> else</span>
</pre>
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2346
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<pre style="margin: 0;">-<span id="LC2346" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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2346
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<pre style="margin: 0;">+<span id="LC2346" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2347
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2347
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2347" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2348
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2348
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2348" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2349
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2349
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<pre style="margin: 0;"> <span id="LC2349" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2353,7 +2353,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2353
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2353
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<pre style="margin: 0;"> <span id="LC2353" class="line" lang="diff"> result=$?</span>
</pre>
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2354
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2354
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<pre style="margin: 0;"> <span id="LC2354" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-hky-rhet-nucl.test</span></span>
</pre>
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2355
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2355
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<pre style="margin: 0;"> <span id="LC2355" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-hky-rhet-nucl.test</span></span>
</pre>
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2356
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<pre style="margin: 0;">-<span id="LC2356" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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2356
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<pre style="margin: 0;">+<span id="LC2356" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2357
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2357
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<pre style="margin: 0;"> <span id="LC2357" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2358
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2358
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2358" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2359
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2359
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2359" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2361,7 +2361,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2361
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<td class="diff-line-num new_line" data-linenumber="2361" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2361
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2361" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2362" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2362
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<td class="diff-line-num new_line" data-linenumber="2362" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2362
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2362" class="line" lang="diff"> exit 0</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2363" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2363
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<td class="diff-line-num new_line" data-linenumber="2363" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2363
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2363" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2364" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2364
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<td class="diff-line-num new_line old" data-linenumber="2364" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2364" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2364" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2364
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<pre style="margin: 0;">+<span id="LC2364" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2365
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<td class="diff-line-num new_line" data-linenumber="2365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2365
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2365" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2366" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2366
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<td class="diff-line-num new_line" data-linenumber="2366" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2366
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2366" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2367
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<td class="diff-line-num new_line" data-linenumber="2367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2367
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2367" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2371,7 +2371,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2371
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<td class="diff-line-num new_line" data-linenumber="2371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2371
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2371" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2372
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<td class="diff-line-num new_line" data-linenumber="2372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2372
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2372" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-jtt-prot.test</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2373
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<td class="diff-line-num new_line" data-linenumber="2373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2373
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2373" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-jtt-prot.test</span></span>
</pre>
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2374
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<td class="diff-line-num new_line old" data-linenumber="2374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2374" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2374
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<pre style="margin: 0;">+<span id="LC2374" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2375" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2375
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<td class="diff-line-num new_line" data-linenumber="2375" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2375
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2375" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2376
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<td class="diff-line-num new_line" data-linenumber="2376" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2376
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2376" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2377
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<td class="diff-line-num new_line" data-linenumber="2377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2377
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2377" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2379,7 +2379,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2379
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<td class="diff-line-num new_line" data-linenumber="2379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2379
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2379" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2380" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2380
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<td class="diff-line-num new_line" data-linenumber="2380" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2380
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2380" class="line" lang="diff"> exit 0</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2381
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<td class="diff-line-num new_line" data-linenumber="2381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2381
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2381" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2382
</td>
<td class="diff-line-num new_line old" data-linenumber="2382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2382" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2382
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<pre style="margin: 0;">+<span id="LC2382" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2383
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<td class="diff-line-num new_line" data-linenumber="2383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2383
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2383" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2384
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2384
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<pre style="margin: 0;"> <span id="LC2384" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2385
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2385
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<pre style="margin: 0;"> <span id="LC2385" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2389,7 +2389,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2389
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2389
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<pre style="margin: 0;"> <span id="LC2389" class="line" lang="diff"> result=$?</span>
</pre>
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2390
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2390
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<pre style="margin: 0;"> <span id="LC2390" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-jtt-rhet-clock-prot.test</span></span>
</pre>
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2391
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2391
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<pre style="margin: 0;"> <span id="LC2391" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-jtt-rhet-clock-prot.test</span></span>
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2392
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<pre style="margin: 0;">-<span id="LC2392" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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2392
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<pre style="margin: 0;">+<span id="LC2392" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2393
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2393
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<pre style="margin: 0;"> <span id="LC2393" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2394
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2394
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2394" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2395
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2395
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2395" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2397,7 +2397,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2397
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2397
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<pre style="margin: 0;"> <span id="LC2397" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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2398
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2398
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<pre style="margin: 0;"> <span id="LC2398" class="line" lang="diff"> exit 0</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2399
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2399
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2399" class="line" lang="diff"> else</span>
</pre>
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2400
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<pre style="margin: 0;">-<span id="LC2400" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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2400
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<pre style="margin: 0;">+<span id="LC2400" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2401
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2401
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2401" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2402
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2402
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2402" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2403
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2403
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<pre style="margin: 0;"> <span id="LC2403" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2407,7 +2407,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2407
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2407
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<pre style="margin: 0;"> <span id="LC2407" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2408
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2408
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<pre style="margin: 0;"> <span id="LC2408" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-jtt-rhet-prot.test</span></span>
</pre>
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2409
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2409
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<pre style="margin: 0;"> <span id="LC2409" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-jtt-rhet-prot.test</span></span>
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2410
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<pre style="margin: 0;">-<span id="LC2410" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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2410
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<pre style="margin: 0;">+<span id="LC2410" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
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<td class="diff-line-num old_line" data-linenumber="2411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2411
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<td class="diff-line-num new_line" data-linenumber="2411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2411
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2411" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2412
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<td class="diff-line-num new_line" data-linenumber="2412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2412
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2412" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2413
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<td class="diff-line-num new_line" data-linenumber="2413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2413
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2413" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2415,7 +2415,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2415
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<td class="diff-line-num new_line" data-linenumber="2415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2415
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2415" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2416
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<td class="diff-line-num new_line" data-linenumber="2416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2416
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2416" class="line" lang="diff"> exit 0</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2417
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<td class="diff-line-num new_line" data-linenumber="2417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2417
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2417" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2418
</td>
<td class="diff-line-num new_line old" data-linenumber="2418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC2418" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2418
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC2418" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2419
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<td class="diff-line-num new_line" data-linenumber="2419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2419
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2419" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2420
</td>
<td class="diff-line-num new_line" data-linenumber="2420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2420
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2420" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2421
</td>
<td class="diff-line-num new_line" data-linenumber="2421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2421
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2421" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2425,7 +2425,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2425
</td>
<td class="diff-line-num new_line" data-linenumber="2425" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2425
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2425" class="line" lang="diff"> result=$?</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2426
</td>
<td class="diff-line-num new_line" data-linenumber="2426" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2426
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2426" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-mtrev-prot.test</span></span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2427
</td>
<td class="diff-line-num new_line" data-linenumber="2427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2427
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2427" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-mtrev-prot.test</span></span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2428
</td>
<td class="diff-line-num new_line old" data-linenumber="2428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2428" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="2429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2428
</td>
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<pre style="margin: 0;">+<span id="LC2428" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2429
</td>
<td class="diff-line-num new_line" data-linenumber="2429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2429
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2429" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2430
</td>
<td class="diff-line-num new_line" data-linenumber="2430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2430
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2430" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2431
</td>
<td class="diff-line-num new_line" data-linenumber="2431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2431
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2431" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2433,7 +2433,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2433
</td>
<td class="diff-line-num new_line" data-linenumber="2433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2433
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2433" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2434" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2434
</td>
<td class="diff-line-num new_line" data-linenumber="2434" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2434
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2434" class="line" lang="diff"> exit 0</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2435
</td>
<td class="diff-line-num new_line" data-linenumber="2435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2435
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2435" class="line" lang="diff"> else</span>
</pre>
</td>
</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2436
</td>
<td class="diff-line-num new_line old" data-linenumber="2436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2436" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2436
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<pre style="margin: 0;">+<span id="LC2436" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2437
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2437
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<pre style="margin: 0;"> <span id="LC2437" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2438
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2438
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<pre style="margin: 0;"> <span id="LC2438" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2439
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2439
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<pre style="margin: 0;"> <span id="LC2439" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2443,7 +2443,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2443
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2443
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<pre style="margin: 0;"> <span id="LC2443" class="line" lang="diff"> result=$?</span>
</pre>
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2444
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2444
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<pre style="margin: 0;"> <span id="LC2444" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-pure-bin.test</span></span>
</pre>
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2445
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2445
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<pre style="margin: 0;"> <span id="LC2445" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-pure-bin.test</span></span>
</pre>
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2446
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<pre style="margin: 0;">-<span id="LC2446" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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2446
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<pre style="margin: 0;">+<span id="LC2446" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2447
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2447
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<pre style="margin: 0;"> <span id="LC2447" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2448
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2448
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2448" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2449
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2449
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<pre style="margin: 0;"> <span id="LC2449" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2451" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2451" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2451,7 +2451,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2451
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2451
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<pre style="margin: 0;"> <span id="LC2451" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2452" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2452
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2452
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<pre style="margin: 0;"> <span id="LC2452" class="line" lang="diff"> exit 0</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2453" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2453
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<td class="diff-line-num new_line" data-linenumber="2453" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2453
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2453" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2454" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2454
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<td class="diff-line-num new_line old" data-linenumber="2454" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2454" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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2454
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<pre style="margin: 0;">+<span id="LC2454" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2455
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2455
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2455" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2456" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2456
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2456
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2456" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2457" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2457
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2457
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2457" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2461" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2461" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2461,7 +2461,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2461
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2461
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<pre style="margin: 0;"> <span id="LC2461" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2462" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2462
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2462
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<pre style="margin: 0;"> <span id="LC2462" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-pure-nucl.test</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2463
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2463
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<pre style="margin: 0;"> <span id="LC2463" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-pure-nucl.test</span></span>
</pre>
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2464
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<pre style="margin: 0;">-<span id="LC2464" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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2464
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<pre style="margin: 0;">+<span id="LC2464" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2465
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2465
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<pre style="margin: 0;"> <span id="LC2465" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2466
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2466
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<pre style="margin: 0;"> <span id="LC2466" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2467
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2467
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<pre style="margin: 0;"> <span id="LC2467" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2469" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2469" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2469,7 +2469,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2469
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2469
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<pre style="margin: 0;"> <span id="LC2469" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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2470
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2470
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<pre style="margin: 0;"> <span id="LC2470" class="line" lang="diff"> exit 0</span>
</pre>
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2471
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<td class="diff-line-num new_line" data-linenumber="2471" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2471
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<pre style="margin: 0;"> <span id="LC2471" class="line" lang="diff"> else</span>
</pre>
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2472
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<pre style="margin: 0;">-<span id="LC2472" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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2472
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<pre style="margin: 0;">+<span id="LC2472" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2473
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2473
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2473" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2474
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2474
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2474" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2475
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2475
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2475" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2479,7 +2479,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2479
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2479
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<pre style="margin: 0;"> <span id="LC2479" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2480
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2480
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<pre style="margin: 0;"> <span id="LC2480" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-pure-prot.test</span></span>
</pre>
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2481
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2481
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<pre style="margin: 0;"> <span id="LC2481" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-pure-prot.test</span></span>
</pre>
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2482
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<pre style="margin: 0;">-<span id="LC2482" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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2482
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<pre style="margin: 0;">+<span id="LC2482" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2483
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2483
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2483" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2484
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<td class="diff-line-num new_line" data-linenumber="2484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2484
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2484" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2485
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2485
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2485" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2487,7 +2487,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2487
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<td class="diff-line-num new_line" data-linenumber="2487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2487
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2487" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2488" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2488
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2488
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<pre style="margin: 0;"> <span id="LC2488" class="line" lang="diff"> exit 0</span>
</pre>
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2489
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<td class="diff-line-num new_line" data-linenumber="2489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2489
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2489" class="line" lang="diff"> else</span>
</pre>
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2490
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<td class="diff-line-num new_line old" data-linenumber="2490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2490" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2490
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<pre style="margin: 0;">+<span id="LC2490" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2491
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2491
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2491" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2492
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<td class="diff-line-num new_line" data-linenumber="2492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2492
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2492" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2493
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<td class="diff-line-num new_line" data-linenumber="2493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2493
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2493" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2497,7 +2497,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2497
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<td class="diff-line-num new_line" data-linenumber="2497" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2497
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<pre style="margin: 0;"> <span id="LC2497" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2498
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2498
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<pre style="margin: 0;"> <span id="LC2498" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-tn-nucl.test</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2499
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2499
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2499" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-tn-nucl.test</span></span>
</pre>
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2500
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<pre style="margin: 0;">-<span id="LC2500" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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</td>
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2500
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<pre style="margin: 0;">+<span id="LC2500" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2501" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2501
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2501
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2501" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2502" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2502
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<td class="diff-line-num new_line" data-linenumber="2502" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2502
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2502" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2503" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2503
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2503
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2503" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2505,7 +2505,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2505
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<td class="diff-line-num new_line" data-linenumber="2505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2505
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2505" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2506
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<td class="diff-line-num new_line" data-linenumber="2506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2506
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2506" class="line" lang="diff"> exit 0</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2507
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<td class="diff-line-num new_line" data-linenumber="2507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2507
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2507" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2508
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<td class="diff-line-num new_line old" data-linenumber="2508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC2508" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="2508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2508
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<pre style="margin: 0;">+<span id="LC2508" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2509
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<td class="diff-line-num new_line" data-linenumber="2509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2509
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2509" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2510
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<td class="diff-line-num new_line" data-linenumber="2510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2510
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2510" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2511
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<td class="diff-line-num new_line" data-linenumber="2511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2511
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2511" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2515,7 +2515,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2515
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2515
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<pre style="margin: 0;"> <span id="LC2515" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2516
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<td class="diff-line-num new_line" data-linenumber="2516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2516
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<pre style="margin: 0;"> <span id="LC2516" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-vt-prot.test</span></span>
</pre>
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2517
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2517
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<pre style="margin: 0;"> <span id="LC2517" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-vt-prot.test</span></span>
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<td class="diff-line-num old old_line" data-linenumber="2518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2518
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<td class="diff-line-num new_line old" data-linenumber="2518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2518" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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<td class="diff-line-num new old_line" data-linenumber="2519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2518
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<pre style="margin: 0;">+<span id="LC2518" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2519
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<td class="diff-line-num new_line" data-linenumber="2519" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2519
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<pre style="margin: 0;"> <span id="LC2519" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2520
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<td class="diff-line-num new_line" data-linenumber="2520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2520
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2520" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2521
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<td class="diff-line-num new_line" data-linenumber="2521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2521
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2521" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2523,7 +2523,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2523
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2523
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<pre style="margin: 0;"> <span id="LC2523" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2524
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<td class="diff-line-num new_line" data-linenumber="2524" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2524
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<pre style="margin: 0;"> <span id="LC2524" class="line" lang="diff"> exit 0</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2525" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2525
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<td class="diff-line-num new_line" data-linenumber="2525" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2525
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2525" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2526
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<td class="diff-line-num new_line old" data-linenumber="2526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2526" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2526
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<pre style="margin: 0;">+<span id="LC2526" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2527
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2527
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2527" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2528
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<td class="diff-line-num new_line" data-linenumber="2528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2528
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2528" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2529
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<td class="diff-line-num new_line" data-linenumber="2529" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2529
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2529" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2533,7 +2533,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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<td class="diff-line-num old_line" data-linenumber="2533" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2533
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2533
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<pre style="margin: 0;"> <span id="LC2533" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2534" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2534
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2534
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<pre style="margin: 0;"> <span id="LC2534" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/qp-wag-prot.test</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2535
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<td class="diff-line-num new_line" data-linenumber="2535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2535
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<pre style="margin: 0;"> <span id="LC2535" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/qp-wag-prot.test</span></span>
</pre>
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2536
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<pre style="margin: 0;">-<span id="LC2536" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2536
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<pre style="margin: 0;">+<span id="LC2536" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2537
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2537
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2537" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2538" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2538
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<td class="diff-line-num new_line" data-linenumber="2538" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2538
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2538" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2539
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<td class="diff-line-num new_line" data-linenumber="2539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2539
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<pre style="margin: 0;"> <span id="LC2539" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2541" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2541" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2541,7 +2541,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2541
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2541
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2541" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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2542
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2542
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<pre style="margin: 0;"> <span id="LC2542" class="line" lang="diff"> exit 0</span>
</pre>
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2543
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<td class="diff-line-num new_line" data-linenumber="2543" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2543
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2543" class="line" lang="diff"> else</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2544
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<td class="diff-line-num new_line old" data-linenumber="2544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2544" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2544" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2544
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<pre style="margin: 0;">+<span id="LC2544" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2545
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2545
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2545" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2546" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2546
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<td class="diff-line-num new_line" data-linenumber="2546" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2546
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2546" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2547
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2547
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2547" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2551" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2551,7 +2551,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2551
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2551
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2551" class="line" lang="diff"> result=$?</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2552" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2552
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<td class="diff-line-num new_line" data-linenumber="2552" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2552
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2552" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/template-test</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2553" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2553
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<td class="diff-line-num new_line" data-linenumber="2553" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2553
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2553" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/template-test</span></span>
</pre>
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2554
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<pre style="margin: 0;">-<span id="LC2554" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
</pre>
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2554
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<pre style="margin: 0;">+<span id="LC2554" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
</pre>
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2555
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2555
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2555" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2556
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<td class="diff-line-num new_line" data-linenumber="2556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2556
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2556" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2557" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2557
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2557
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2557" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2559,7 +2559,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2559
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<td class="diff-line-num new_line" data-linenumber="2559" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2559
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2559" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2560
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<td class="diff-line-num new_line" data-linenumber="2560" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2560
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2560" class="line" lang="diff"> exit 0</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2561
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<td class="diff-line-num new_line" data-linenumber="2561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2561
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2561" class="line" lang="diff"> else</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="2562" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2562
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<td class="diff-line-num new_line old" data-linenumber="2562" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2562" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="2563" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2562" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2562
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<pre style="margin: 0;">+<span id="LC2562" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2563
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2563
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2563" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
</td>
</tr>
<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="2564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2564
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2564
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<pre style="margin: 0;"> <span id="LC2564" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2565
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2565
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<pre style="margin: 0;"> <span id="LC2565" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2569,7 +2569,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2569
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2569
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<pre style="margin: 0;"> <span id="LC2569" class="line" lang="diff"> result=$?</span>
</pre>
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2570
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2570
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<pre style="margin: 0;"> <span id="LC2570" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/ut-pure-prot.test</span></span>
</pre>
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2571
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2571
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<pre style="margin: 0;"> <span id="LC2571" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/ut-pure-prot.test</span></span>
</pre>
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2572
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<pre style="margin: 0;">-<span id="LC2572" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span><span class="idiff left right"> if test $GENERATE -eq 1; then</span></span>
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2572
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<pre style="margin: 0;">+<span id="LC2572" class="line" lang="diff"><span class="p">@@ -229,6 +229,7 @@</span></span>
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2573
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2573
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<pre style="margin: 0;"> <span id="LC2573" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2574
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2574
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2574" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2575
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2575
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<pre style="margin: 0;"> <span id="LC2575" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2577" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2577,7 +2577,7 @@ This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</td>
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2577
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2577
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<pre style="margin: 0;"> <span id="LC2577" class="line" lang="diff"> > check-${TEST_PREF}</span>
</pre>
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2578
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2578
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<pre style="margin: 0;"> <span id="LC2578" class="line" lang="diff"> exit 0</span>
</pre>
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2579
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2579
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<pre style="margin: 0;"> <span id="LC2579" class="line" lang="diff"> else</span>
</pre>
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2580
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<pre style="margin: 0;">-<span id="LC2580" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span><span class="idiff left right"> else</span></span>
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2580
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<pre style="margin: 0;">+<span id="LC2580" class="line" lang="diff"><span class="p">@@ -238,6 +239,7 @@</span></span>
</pre>
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2581
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2581
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<pre style="margin: 0;"> <span id="LC2581" class="line" lang="diff"> | grep -v "^Date and time" \</span>
</pre>
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2582
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2582
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<pre style="margin: 0;"> <span id="LC2582" class="line" lang="diff"> | grep -v "^Runtime (" \</span>
</pre>
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2583
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2583
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<pre style="margin: 0;"> <span id="LC2583" class="line" lang="diff"> | sed -e "s/$VVV//g" \</span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/081ecd732c2651476d4ab93033d524dcf18d6c12...88a148a200cbffc3525359cf8522a7de6d185de5#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,4 +5,4 @@ fix-mpi3-build.patch</td>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">update_test_results.patch</span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">reproducible-build.patch</span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">reduce_decimals_for_testing.patch</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"><span class="idiff left right">skip-ut-prottest-for-non-amd64</span>.patch</span></pre>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"><span class="idiff left right">add-failsafe-for-ut-prottest</span>.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/tree-puzzle/-/compare/081ecd732c2651476d4ab93033d524dcf18d6c12...88a148a200cbffc3525359cf8522a7de6d185de5#7670715b4364116a0894a6bc1cb785d4b186cfea"><strong>debian/patches/skip-ut-prottest-for-non-amd64.patch</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: Skip ut-pure-prot.test for !amd64</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <npatra974@gmail.com></span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-02-07</span></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/tests/ut-pure-prot.test</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/tests/ut-pure-prot.test</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="p">@@ -20,6 +20,7 @@</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"> fname=`echo $0 | sed -e 's/.*\///'`</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"> GENERATE=0</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"> TESTTYPE="Testing: "</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+BUILDARCH=`dpkg-architecture -qDEB_BUILD_ARCH`</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> if test 0 -ne $# </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"> then</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"><span class="p">@@ -222,6 +223,10 @@</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"> ;;</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"> esac</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+if [ "$BUILDARCH" != "amd64" ] ; then</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ exit 77</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+fi</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"> if test $GENERATE -eq 1; then</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"> VVV=`echo $VERSION | sed -e "s/\./\\./g"`</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"> if test "X$VVV" = "X"; then VVV="ASDFGHJKL" ; fi</span></pre>
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