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<h3>
Nilesh Patra pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/python-parasail">Debian Med / python-parasail</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-parasail/-/commit/3fe871216b401e3e861850288f66dd4f2c7d0105">3fe87121</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-10T23:06:12+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.4</pre>
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
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<li class="file-stats">
<a href="#45267e3a9556cafa9cb7b61dab7a3b6659e73aad">
CHANGELOG.rst
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<li class="file-stats">
<a href="#5026acb5da358de6dd35d4f18274af734077c672">
parasail/__init__.py
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<h4>Changes:</h4>
<li id="dea01dd89a3b602828e630677fde5d77c06441c8">
<a href="https://salsa.debian.org/med-team/python-parasail/-/commit/3fe871216b401e3e861850288f66dd4f2c7d0105#dea01dd89a3b602828e630677fde5d77c06441c8"><strong>.travis.yml</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,25 +13,27 @@ jobs:</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="yaml"> <span class="na" style="color: #008080;">before_install</span><span class="pi">:</span></span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">choco install python --version 3.7.5</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">export PATH="/c/Python37:/c/Python37/Scripts:$PATH"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="yaml"> <span class="c1" style="color: #998; font-style: italic;"># make sure it's on PATH as 'python3'</span></span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">ln -s /c/Python37/python.exe /c/Python37/python3.exe</span></span>
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="yaml"></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># <span class="idiff left right">all three OSes agree about 'pip3'</span></span></span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># <span class="idiff left right">'python' points to Python 2.7 on macOS but points to Python 3.7 on Linux and Windows</span></span></span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># <span class="idiff left right">'python3' is a 'command not found' error on Windows but 'py' works on Windows only</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># <span class="idiff left right">cibuildwheel creates a virtualenv for the test</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># <span class="idiff left right">it seems to use "python" not "python3" for testing</span></span></span>
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="yaml"><span class="c1" style="color: #998; font-style: italic;"># <span class="idiff left right">while the rest of the build etc should use python3</span></span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="yaml"><span class="na" style="color: #008080;">env</span><span class="pi">:</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="yaml"> <span class="na" style="color: #008080;">global</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">CIBW_BUILD_VERBOSITY=3</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">CIBW_BUILD="cp37-*"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">CIBW_TEST_COMMAND_MACOS="python3 -m unittest discover {project}/tests"</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">CIBW_TEST_COMMAND_LINUX="python3 -m unittest discover {project}/tests"</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">CIBW_TEST_COMMAND_WINDOWS="python -m unittest discover {project}/tests"</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">CIBW_TEST_COMMAND="python -m unittest discover {project}/tests"</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">TWINE_USERNAME=__token__</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="yaml"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="yaml"><span class="na" style="color: #008080;">install</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">p<span class="idiff left right">ip3 install twine</span> cibuildwheel==1.6.4 wheel</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;"><span class="idiff left right">wget -O parasail-master.zip https://github.com/jeffdaily/parasail/archive/master.zip</span></span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">p<span class="idiff left right">ython3 -m pip install</span> cibuildwheel==1.6.4 wheel</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;"><span class="idiff left right">python3 -m pip install --upgrade --upgrade-strategy eager twine</span></span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="yaml"></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="yaml"><span class="na" style="color: #008080;">script</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">cibuildwheel --output-dir wheelhouse</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">if [[ "$TRAVIS_OS_NAME" = "windows" ]]; then python setup.py sdist -d wheelhouse; fi</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;"><span class="idiff left right">python3 -m </span>cibuildwheel --output-dir wheelhouse</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">if [[ "$TRAVIS_OS_NAME" = "windows" ]]; then python<span class="idiff left right">3</span> setup.py sdist -d wheelhouse; fi</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="yaml"></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="yaml"><span class="na" style="color: #008080;">after_success</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">if [[ $TRAVIS_TAG ]]; then python3 -m twine upload wheelhouse/* || python -m twine upload wheelhouse/* ; fi</span></span></pre>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">if [[ $TRAVIS_TAG ]]; then python3 -m pip install --upgrade --upgrade-strategy eager twine ; fi</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">if [[ $TRAVIS_TAG ]]; then python3 -m twine upload wheelhouse/* ; fi</span></span></pre>
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<a href="https://salsa.debian.org/med-team/python-parasail/-/commit/3fe871216b401e3e861850288f66dd4f2c7d0105#45267e3a9556cafa9cb7b61dab7a3b6659e73aad"><strong>CHANGELOG.rst</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,6 +10,11 @@ Unreleased_</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">-----------</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">The Unreleased section will be empty for tagged releases. Unreleased functionality appears in the develop branch.</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">------------------</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">1.2.4 - 2021-02-06</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">------------------</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">- Fix #60 Missing wheels on PyPI</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">-------------------</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">1.2.3_ - 2020-12-16</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">-------------------</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -159,6 +164,7 @@ The Unreleased section will be empty for tagged releases. Unreleased functionali</td>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext">First tagged release. The 'master' branch always represents the latest stable code. Tagged releases correspond to pypi releases.</span>
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext">.. _Unreleased: https://github.com/jeffdaily/parasail-python/compare/v1.2.3...master</span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext">.. _1.2.4: https://github.com/jeffdaily/parasail-python/compare/v1.2.3...v1.2.4</span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext">.. _1.2.3: https://github.com/jeffdaily/parasail-python/compare/v1.2.2...v1.2.3</span>
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext">.. _1.2.2: https://github.com/jeffdaily/parasail-python/compare/v1.2.1...v1.2.2</span>
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext">.. _1.2.1: https://github.com/jeffdaily/parasail-python/compare/v1.2...v1.2.1</span>
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<a href="https://salsa.debian.org/med-team/python-parasail/-/commit/3fe871216b401e3e861850288f66dd4f2c7d0105#5026acb5da358de6dd35d4f18274af734077c672"><strong>parasail/__init__.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ import sys</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"1.2.<span class="idiff left right">3</span>"</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="python"><span class="n" style="color: #333;">__version__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"1.2.<span class="idiff left right">4</span>"</span></span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"><span class="n" style="color: #333;">__title__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"parasail"</span></span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="n" style="color: #333;">__description__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"pairwise sequence alignment library"</span></span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="n" style="color: #333;">__uri__</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"https://github.com/jeffdaily/parasail-python"</span></span>
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