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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/5c8848abe4fd3d8b9864a6b79451c82111cfbb92">5c8848ab</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-02-10T16:24:07+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.6</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/a4e8977a79fe8d41afa15720d7249191b156761c">a4e8977a</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-02-10T16:25:03+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.6'
Update to upstream version '1.2.6'
with Debian dir 302e32dd03f2c29d4ea15076af5ae9170dc10e54</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/-/commit/68261fcdb35b8f5d078023944114bc5b465cb884">68261fcd</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2021-02-10T18:29:23+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upstream accepted patch, added dep on libhts-dev
The .so is attempted to be loaded.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
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</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<li class="file-stats">
<a href="#6cfbdb297f478b988ce7f28ee6c013bc814b7ed6">
bcbio/dragen/dragen.py
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<li class="file-stats">
<a href="#6b0954b64bb7025f3d13cbef18622daa684dbe1a">
bcbio/pipeline/main.py
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<li class="file-stats">
<a href="#28669a7ddccdf8ac47c577727840379bba16c871">
bcbio/pipeline/rnaseq.py
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<li class="file-stats">
<a href="#6a5842dd9e3c5daac8e6d62a34e4d60ab86b78bf">
bcbio/pipeline/run_info.py
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</li>
<li class="file-stats">
<a href="#4529c40caf2a26a49dd0e781055543aaecdd79fc">
bcbio/provenance/programs.py
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<li class="file-stats">
<a href="#b7e501c752cdb46dea3a09628c724f2111008fc6">
bcbio/variation/annotation.py
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<li class="file-stats">
<a href="#38e9a1f988377830cea6624ef40fa333dd9174f6">
bcbio/variation/vardict.py
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<li class="file-stats">
<a href="#c62737386ec58551581150d32baaafce9009f07f">
config/examples/rnaseq-seqc-getdata.sh
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<li class="file-stats">
<a href="#c13e78239a34bce87353625f73962da8afde8598">
config/examples/rnaseq-seqc.yaml
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<li class="file-stats">
<a href="#6519058175ec41a63e56cd70f874d5efabe85a5c">
config/examples/seqc.csv
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<li class="file-stats">
<a href="#6d2cadb523932676c6f1437d5a369d5b90c31af1">
config/genomes/GRCh37-resources.yaml
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<li class="file-stats">
<a href="#feed131f89893ff61e7bd1b941791558c255f866">
config/genomes/hg19-resources.yaml
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<li class="file-stats">
<a href="#234e8fcf6a3ef36167f45bd34532469e8aef57eb">
config/genomes/hg38-resources.yaml
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<li class="file-stats">
<a href="#959cc6564d1f47e19b8daea754836e8309db2e19">
<span class="new-file">
+
config/templates/purecn_ton.yaml
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<li class="file-stats">
<a href="#d4a01618e69ec23258bcf7f41f3a10f71f40ddee">
config/vcfanno/GRCh37-gemini.conf
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<li class="file-stats">
<a href="#062859ad0e9ca8b80ef940d89d80463771aa419e">
config/vcfanno/hg38-gemini.conf
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</li>
<li class="file-stats">
<a href="#90758652aa44d7aee266bd0d90a2fe01bf23ac55">
config/vcfanno/somatic.conf
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#327f06758fe33558a2e484b512d362b46cac86e0">
<span class="deleted-file">
−
debian/patches/include_tests
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</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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</li>
<li class="file-stats">
<a href="#06ab1978f5f7bbba6c3a94e3f4b306e4ddac4801">
docs/contents/bulk_rnaseq.md
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<li class="file-stats">
<a href="#b8ea2f27fdb24b27de13de2d32707e6af8788bda">
docs/contents/configuration.md
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</li>
<li class="file-stats">
<a href="#83f344ca0b114299c310d87b9ef098903138d93e">
docs/contents/installation.md
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</li>
<li class="file-stats">
<a href="#d780222435a775b157cca2d5946cddc237dd74d7">
docs/contents/purecn.md
</a>
</li>
<li class="file-stats">
<a href="#b1655f936472b3a6a6a310218f78e1d19987454b">
requirements-conda.txt
</a>
</li>
<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
requirements.txt
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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