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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/697a3c6dc917cbbe3dbff46b7581c56ae7ce90ad">697a3c6d</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-11T13:42:20+00:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
</a>
</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/697a3c6dc917cbbe3dbff46b7581c56ae7ce90ad#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 11 Feb 2021 <span class="idiff left right">01:42:04</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Thu, 11 Feb 2021 <span class="idiff left right">13:42:03</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">9</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">9</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | <span class="idiff left right">50</span> | {laboratory,practice,his,oncology,covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> gdcm | <span class="idiff left right">30</span> | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 17<span class="idiff left right">8</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">8</span> | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | <span class="idiff left right">49</span> | {laboratory,practice,his,oncology,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> amide | 3<span class="idiff left right">5</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom3tools | 3<span class="idiff left right">3</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> gdcm | <span class="idiff left right">29</span> | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> htsjdk | 25 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dicomscope | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> gdcm | 21 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> dcm2niix | 20 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gdcm | 20 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> odin | 19 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> nifticlib | 18 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> odin | 18 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dicomnifti | 16 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> gnumed-server | 15 | {covid-19,practice} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> minc-tools | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> plastimatch | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> gnumed-server | 14 | {covid-19,practice} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> plastimatch | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> ngs-sdk | 12 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> pixelmed | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> king | 11 | {imaging,typesetting} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> openslide | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> gdcm | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> invesalius | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> nifti2dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> vtk-dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> biojava-live | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> ea-utils | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> mia | 8 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> mipe | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> vtk-dicom | 8 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> biomaj3-cli | 7 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> fastlink | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> jellyfish1 | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> libncl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> librg-utils-perl | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> mauve-aligner | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> melting | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> mia | 7 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> mipe | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> multiqc | 7 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> <span class="idiff left right">obitools | 7 | {bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> <span class="idiff left right">ngs-sdk | 7 | {bio-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> prime-phylo | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> pymia | 7 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> tracetuner | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> staden | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> beast-mcmc | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> bio-tradis | 6 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> bitseq | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> ecopcr | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> embassy-domainatrix | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> embassy-domsearch | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> estscan | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> ghmm | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> lagan | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> lamarc | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> libsbml | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> libncl | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> mauve-aligner | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> perm | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> phast | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> pymia | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> runcircos-gui | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> saint | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> <span class="idiff left right">staden </span> | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> <span class="idiff left right">tracetuner</span> | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> treeview | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> anfo | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> bitseq | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="plaintext"> busco | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> cufflinks | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> embassy-domainatrix | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> libpal-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> perm | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> phast | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> piler | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> prottest | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="plaintext"> pscan-chip | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> qcumber | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> quorum | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> rambo-k | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> rdp-alignment | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> rdp-classifier | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> salmid | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> salmon | 5 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -90,12 +86,13 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> bamkit | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> canu | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> clonalorigin | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="plaintext"> dicompyler | 4 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> embassy-domalign | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> ghmm | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> hinge | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> jmodeltest | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> libminc | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> mhap | 4 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -105,14 +102,13 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> paraclu | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> proalign | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> qcumber | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> rdp-alignment | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> rtax | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> sibsim4 | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> sight | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> soapsnp | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> stacks | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> suitename | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> surankco | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext"> tvc | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> yaha | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext"> blasr | 3 | {bio,bio-ngs} | </span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext"> cat-bat | 3 | {covid-19,bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -121,6 +117,7 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> fsm-lite | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> getdata | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> ipig | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -130,70 +127,52 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000</td>
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> sprai | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> stacks | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> tvc | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> zalign | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> dextractor | 2 | {bio,covid-19} | </span>
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> emmax | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> gatb-core | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> libmuscle | 2 | {bio-dev} | </span>
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="plaintext"> nifticlib | 2 | {imaging-dev} | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> oscar | 2 | {data,tools,practice} | </span>
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> python-bcbio-gff | 2 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> spaln | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> srf | 2 | {bio-dev} | </span>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> tophat-recondition | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> varscan | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> yanagiba | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="plaintext"> bambamc | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="plaintext"> bbmap | 1 | {covid-19,bio} | </span>
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="plaintext"> bustools | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> gatb-core | 1 | {bio-dev} | </span>
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152
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<pre style="margin: 0;"> <span id="LC152" class="line" lang="plaintext"> gifticlib | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> kmerresistance | 1 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> libbio-mage-utils-perl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> libbpp-core | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> libbpp-phyl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> libbpp-phyl-omics | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> libbpp-popgen | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="plaintext"> libbpp-raa | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> libbpp-seq | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> libbpp-seq-omics | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> libchado-perl | 1 | {bio-dev} | </span>
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168
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> libdisorder | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> libgenome | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> libgkarrays | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> libhmsbeagle | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> libmems | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC174" class="line" lang="plaintext"> libncl | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> libqes | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> libseqlib | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> libstatgen | 1 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"> libmuscle | 1 | {bio-dev} | </span>
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178
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> nanosv | 1 | {bio,covid-19} | </span>
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179
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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180
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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181
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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182
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> parallel-fastq-dump | 1 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> pbseqlib | 1 | {bio-dev} | </span>
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185
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> pigx-rnaseq | 1 | {bio,covid-19} | </span>
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186
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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187
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> pique | 1 | {bio} | </span>
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188
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> pplacer | 1 | {covid-19,bio,bio-phylogeny} | </span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> python-bcbio-gff | 1 | {bio-dev} | </span>
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189
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> sambamba | 1 | {bio} | </span>
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190
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> seq-gen | 1 | {bio} | </span>
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191
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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192
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> skewer | 1 | {bio} | </span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> srf | 1 | {bio-dev} | </span>
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193
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> svim | 1 | {bio} | </span>
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194
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="plaintext"> thesias | 1 | {bio,covid-19} | </span>
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195
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> varna | 1 | {bio} | </span>
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196
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> acedb | 0 | {cloud,bio} | </span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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197
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> biojava4-live | 0 | {bio-dev} | </span>
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198
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> biosyntax | 0 | {bio} | </span>
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199
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> bmtk | 0 | {psychology} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -202,16 +181,35 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000</td>
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202
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="plaintext"> eegdev | 0 | {imaging-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
203
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="plaintext"> emboss-explorer | 0 | {bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
204
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="plaintext"> fis-gtm | 0 | {his} | </span>
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<td class="diff-line-num new old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> gatb-core | 0 | {bio-dev} | </span>
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205
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="plaintext"> htscodecs | 0 | {covid-19,bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
206
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="plaintext"> intake | 0 | {bio-dev,bio} | </span>
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<td class="diff-line-num old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
207
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"> libbigwig | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
208
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext"> libbiod | 0 | {bio-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> libbio-mage-utils-perl | 0 | {bio-dev} | </span>
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<td class="diff-line-num old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
209
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> libbioparser-dev | 0 | {bio-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> libbpp-core | 0 | {bio-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> libbpp-phyl | 0 | {bio-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> libbpp-phyl-omics | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> libbpp-popgen | 0 | {bio-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> libbpp-raa | 0 | {bio-dev} | </span>
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<td class="diff-line-num new old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> libbpp-seq | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> libbpp-seq-omics | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> libchado-perl | 0 | {bio-dev} | </span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> libdisorder | 0 | {bio-dev} | </span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> libgenome | 0 | {bio-dev} | </span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> libgkarrays | 0 | {bio-dev} | </span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> libhmsbeagle | 0 | {bio-dev} | </span>
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210
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="plaintext"> libics | 0 | {imaging-dev,covid-19} | </span>
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211
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="plaintext"> libjloda-java | 0 | {bio-dev} | </span>
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212
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="plaintext"> libmaus2 | 0 | {bio-dev,covid-19} | </span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> libmems | 0 | {bio-dev} | </span>
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213
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> libmialm | 0 | {imaging-dev} | </span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> libncl | 0 | {bio-dev} | </span>
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214
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209
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> libpsortb | 0 | {bio-dev} | </span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> libqes | 0 | {bio-dev} | </span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> libseqlib | 0 | {bio-dev} | </span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> libstatgen | 0 | {bio-dev} | </span>
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215
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213
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="plaintext"> libvistaio | 0 | {imaging-dev} | </span>
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="plaintext"> libxdf | 0 | {imaging-dev} | </span>
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215
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="plaintext"> metastudent-data | 0 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -222,6 +220,7 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000</td>
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> parallel-fastq-dump | 0 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> plasmidid | 0 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -241,5 +240,5 @@ Last-Update: Thu, 11 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> orthanc-gdcm | -1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC242" class="line" lang="plaintext"> sight | -1 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC244" class="line" lang="plaintext">(27<span class="idiff left right">1</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext">(27<span class="idiff left right">0</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="plaintext"></span></pre>
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