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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bioawk">Debian Med / bioawk</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioawk/-/commit/58f9225ac957050bc657df02a1453e71bc3b5173">58f9225a</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2021-02-12T02:45:25+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Optics - thanks Juhani
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioawk/-/commit/ab0ab07f83bbece56fafb30bdcc04fde2c89b51a">ab0ab07f</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2021-02-12T02:46:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bioawk/-/commit/f8088b371c4b2bc9fd0123d11f80b35c64b73a7f">f8088b37</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2021-02-12T02:46:31+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0'

Update to upstream version '1.0'
with Debian dir ff461e435cde85e6997d8ae1388d4fba0e5c48f5</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bioawk/-/compare/2e7f94245e48ec22c99bd7e256dc9428ea0b341c...f8088b371c4b2bc9fd0123d11f80b35c64b73a7f#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">bioawk (1.0-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">bioawk (1.0-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">  * Initial release (Closes: #982544)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
</pre>
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<br>
</li>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bioawk/-/compare/2e7f94245e48ec22c99bd7e256dc9428ea0b341c...f8088b371c4b2bc9fd0123d11f80b35c64b73a7f#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,8 @@ Source: bioawk</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Section: science</span>
</pre>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Priority: optional</span>
</pre>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
</pre>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org>, Nilesh Patra <npatra974@gmail.com></span>
</pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org>,</span>
</pre>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">           Nilesh Patra <npatra974@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">               bison,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">               libz-dev</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +17,7 @@ Package: bioawk</td>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Depends: ${shlibs:Depends}, ${misc:Depends}</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Description: extension of awk for biological sequence analysis</span>
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19
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<td class="diff-line-num new_line old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
 
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> Bioawk is an extension to <span class="idiff left right">[Brian Kernighan's awk]</span>, adding the support of</span>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> Bioawk is an extension to <span class="idiff left right">Brian Kernighan's awk</span>, adding the support of</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
20
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<td class="diff-line-num new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> several common biological data formats, including optionally gzip'ed BED, GFF,</span>
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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
21
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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> SAM, VCF, FASTA/Q and TAB-delimited formats with column names. It also adds a</span>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
22
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> few built-in functions and an command line option to use TAB as the</span>
</pre>
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