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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/metastudent-data">Debian Med / metastudent-data</a>
</h3>
<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/metastudent-data/-/commit/a357d6567e53e6f728b3de661b03978ffd88960b">a357d656</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-16T09:08:44+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Deactivate patch from previous upload since it creates architecture-dependent data files
</pre>
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<li>
<strong><a href="https://salsa.debian.org/med-team/metastudent-data/-/commit/c2723bb32c3ae6c4da83d47d79626e1bafbbc5e0">c2723bb3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-16T09:15:23+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Enforce BLASTDB version 4 format
</pre>
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<strong><a href="https://salsa.debian.org/med-team/metastudent-data/-/commit/4f22b8d9e12e7efa68ccd2be46fc2a64b208b324">4f22b8d9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-16T09:20:41+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#cf0aededf31fe6a45ee683f5badd7ad7528f7088">
debian/patches/permit_blastdb5_data_files.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8751ce1b056539114b6c433e20103789cad6adb0">
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+
debian/patches/use_blastdb_format_4.patch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">metastudent-data (2.0.1-7) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Deactivate patch from previous upload since it creates</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> architecture-dependent data files (see</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> https://lists.debian.org/debian-med/2021/02/msg00097.html)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Enforce BLASTDB version 4 format</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 16 Feb 2021 09:15:30 +0100</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">metastudent-data (2.0.1-6) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team upload.</span>
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<li id="cf0aededf31fe6a45ee683f5badd7ad7528f7088">
<a href="https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324#cf0aededf31fe6a45ee683f5badd7ad7528f7088"><strong>debian/patches/permit_blastdb5_data_files.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Attention: This patch is deactivated since BLASTDB version 5 format is not architecture independent</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> See https://lists.debian.org/debian-med/2021/02/msg00097.html</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff"><span class="p">Description: Enable BLASTDB version 5 format</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/981293</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<li id="bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
<a href="https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">01_formatdb_fix_prot_dbtype.patch</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">permit_blastdb5_data_files.patch</span></pre>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"># permit_blastdb5_data_files.patch # see comment in patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">use_blastdb_format_4.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/metastudent-data/-/compare/41ba8508ba2a8f9515961eb07dbbb8e48ed4aa73...4f22b8d9e12e7efa68ccd2be46fc2a64b208b324#8751ce1b056539114b6c433e20103789cad6adb0"><strong>debian/patches/use_blastdb_format_4.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Enforce BLASTDB version 4 format</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> see https://lists.debian.org/debian-med/2021/02/msg00052.html</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> (second of the suggested options)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> and https://lists.debian.org/debian-med/2021/02/msg00097.html</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">Bug-Debian: https://bugs.debian.org/981293</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">Author: Andreas Tille <tille@debian.org></span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="p">Last-Update: Tue, 16 Feb 2021 09:07:36 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff">--- a/Makefile.am</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile.am</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">@@ -21,7 +21,7 @@</span> install-data-local:</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> # BLAST databases are architecture dependent and have to be installed in pkgdatadir</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> $(BLASTDB) : %.fasta.psq : $(srcdir)/%.fasta</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> mkdir -p $(dir $@) && \</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- formatdb -p T -i "$<" -n "$(@:.psq=)" && rm -f formatdb.log</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ makeblastdb -dbtype prot -in "$<" -out "$(@:.psq=)" -blastdb_version 4</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> dist-hook:</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> find "$(distdir)" -name .svn -o -name '*.phr' -o -name '*.pin' -o -name '*.psq' | xargs rm -rf --</span></pre>
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