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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12e60e422c99a0b2e9ffd3beed3c675483f8e78a">12e60e42</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-16T13:42:18+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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</li>
<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/12e60e422c99a0b2e9ffd3beed3c675483f8e78a#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 16 Feb 2021 <span class="idiff left right">01</span>:42:04 +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Tue, 16 Feb 2021 <span class="idiff left right">13</span>:42:04 +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 180 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 100 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 52 | {laboratory,practice,his,oncology,covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> amide | 38 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 35 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> gdcm | 32 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 28 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> gdcm | 23 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dcm2niix | 21 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> htsjdk | 21 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> dicomnifti | 19 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> odin | 19 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> nifticlib | 18 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> minc-tools | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> plastimatch | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 179 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 98 | {practice,imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 51 | {laboratory,practice,his,oncology,covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> amide | 39 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom3tools | 36 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> gdcm | 36 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 29 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> gdcm | 24 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 22 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> htsjdk | 22 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> dicomnifti | 20 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> odin | 20 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> nifticlib | 19 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> minc-tools | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> plastimatch | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> invesalius | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> gnumed-server | 14 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">invesalius | 14 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">king | 13 | {imaging,typesetting}</span> | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">king | 14 | {imaging,typesetting}</span> | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right">openslide | 13 | {imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> pixelmed | 13 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> <span class="idiff left right">openslide | 12 | {imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> <span class="idiff left right">adun.app | 11 | {bio} </span> | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> ngs-sdk | 11 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> nifti2dicom | 11 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> <span class="idiff left right">adun.app | 10 | {bio} </span> | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom | 10 | {imaging} </span> | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> <span class="idiff left right">insighttoolkit4 | 9 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom | 11 | {imaging}</span> | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> <span class="idiff left right">insighttoolkit4 | 10 | {imaging-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> <span class="idiff left right">mia | 8 | {imaging} </span> | </span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> multiqc | 8 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> orthanc-webviewer | 8 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,12 +36,12 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> jebl2 | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> jellyfish1 | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> melting | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> mia | 7 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> biojava-live | 6 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> biomaj3-cli | 6 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> dicompyler | 6 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> fastlink | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> libminc | 6 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> mipe | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,11 +55,9 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> embassy-domsearch | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> lagan | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> lamarc | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> libsbml | 5 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> mauve-aligner | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> runcircos-gui | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> saint | 5 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -83,6 +82,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> orthanc-postgresql | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> perm | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> phast | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> phyutility | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> prottest | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> pscan-chip | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -95,6 +95,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> suitename | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> arden | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> assemblytics | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> atropos | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"> bamkit | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"> cat-bat | 3 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> clonalframeml | 3 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -118,6 +119,7 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> rambo-k | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> rdp-alignment | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> rtax | 3 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> samblaster | 3 | {covid-19,bio} | </span>
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123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> seqsero | 3 | {bio} | </span>
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124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> soapaligner | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -126,7 +128,6 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> stacks | 3 | {bio} | </span>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> surankco | 3 | {bio} | </span>
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> yaha | 3 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="plaintext"> atropos | 2 | {bio} | </span>
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> blasr | 2 | {bio,bio-ngs} | </span>
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131
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> blimps | 2 | {bio} | </span>
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132
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> dextractor | 2 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -135,9 +136,8 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> libdivsufsort | 2 | {bio-dev} | </span>
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> metaphlan2 | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> openslide | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> oscar | 2 | {data,tools,practice} | </span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="plaintext"> plasmidseeker | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> samb<span class="idiff left right">laster | 2 | {covid-19,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> samb<span class="idiff left right">amba | 2 | {bio} </span> | </span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> spaln | 2 | {bio,covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -159,13 +159,13 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> oscar | 1 | {data,tools,practice} | </span>
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162
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163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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163
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164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> pigx-rnaseq | 1 | {bio,covid-19} | </span>
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164
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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165
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> pique | 1 | {bio} | </span>
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166
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167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="plaintext"> pplacer | 1 | {covid-19,bio,bio-phylogeny} | </span>
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167
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> python-bcbio-gff | 1 | {bio-dev} | </span>
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168
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<pre style="margin: 0;">-<span id="LC168" class="line" lang="plaintext"> sambamba | 1 | {bio} | </span>
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169
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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170
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> seq-gen | 1 | {bio} | </span>
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171
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="plaintext"> skesa | 1 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -224,8 +224,8 @@ Last-Update: Tue, 16 Feb 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> plasmidid | 0 | {bio,covid-19} | </span>
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227
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {bio-dev,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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229
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229
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio,bio-dev} | </span>
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230
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230
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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231
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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