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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/gwama">Debian Med / gwama</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/gwama/-/commit/906f0b2958a08672736d860f6283bfb543ebf31b">906f0b29</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-18T20:56:23+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use right variable CXX for g++ rathter than CC
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gwama/-/commit/c1cfb5f4b7cf8aca3266ca0f85100b3e352e24ec">c1cfb5f4</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-18T20:56:50+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/rules: Use dh_auto_build rather than hardcoding $(MAKE)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gwama/-/commit/ac1ac7ea0de716c83a8b294a74f41b7307c7ddf7">ac1ac7ea</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-18T20:59:06+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add myself to uploaders
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/gwama/-/commit/b4cc842cbb95388814701edf56d8ca6186ec5a56">b4cc842c</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-18T21:00:49+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
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<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#5df163a63a095b57064178a3938206a8e868b53b">
<span class="new-file">
+
debian/patches/04-Fix-non-cross-build.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/gwama/-/compare/da764a86b8810067fc33ed4153a3127d4ece4cf4...b4cc842cbb95388814701edf56d8ca6186ec5a56#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">gwama (2.2.2+dfsg-4) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Use right variable CXX for g++ rathter than CC</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * d/rules: Use dh_auto_build rather than hardcoding $(MAKE)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> - The above two changes fix non-crossbuildability</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Add myself to uploaders</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Declare compliance with policy 4.5.1</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> -- Nilesh Patra <npatra974@gmail.com> Thu, 18 Feb 2021 20:57:02 +0530</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">gwama (2.2.2+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> * Team upload.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/gwama/-/compare/da764a86b8810067fc33ed4153a3127d4ece4cf4...b4cc842cbb95388814701edf56d8ca6186ec5a56#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: gwama</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Uploaders: Dylan Aïssi <daissi@debian.org></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Uploaders: Dylan Aïssi <daissi@debian.org>,</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Nilesh Patra <npatra974@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/gwama</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/gwama.git</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Homepage: https://www.geenivaramu.ee/en/tools/gwama</span>
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<li id="5df163a63a095b57064178a3938206a8e868b53b">
<a href="https://salsa.debian.org/med-team/gwama/-/compare/da764a86b8810067fc33ed4153a3127d4ece4cf4...b4cc842cbb95388814701edf56d8ca6186ec5a56#5df163a63a095b57064178a3938206a8e868b53b"><strong>debian/patches/04-Fix-non-cross-build.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Use right variable CXX for g++ rathter than CC</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <npatra974@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-02-18</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -2,11 +2,11 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> VERSION = 2.7</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CC = g++</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CXX = g++</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> DEBUGFLAGS = -Wno-deprecated -O3 -lz</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> GWAMA: main.cpp</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- g++ $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) main.cpp marker.cpp statistics.cpp study.cpp chisquaredistr.cpp normaldistr.cpp gammaf.cpp igammaf.cpp ap.cpp global.cpp problem.cpp tools.cpp cohort.cpp commandLine.cpp readFile.cpp $(DEBUGFLAGS) -o GWAMA</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CXX) $(CXXFLAGS) $(CPPFLAGS) $(LDFLAGS) main.cpp marker.cpp statistics.cpp study.cpp chisquaredistr.cpp normaldistr.cpp gammaf.cpp igammaf.cpp ap.cpp global.cpp problem.cpp tools.cpp cohort.cpp commandLine.cpp readFile.cpp $(DEBUGFLAGS) -o GWAMA</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span></pre>
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<a href="https://salsa.debian.org/med-team/gwama/-/compare/da764a86b8810067fc33ed4153a3127d4ece4cf4...b4cc842cbb95388814701edf56d8ca6186ec5a56#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">01_Makefile_Add_FLAGS_to_activate_Hardening.patch</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">03.Fix_lintian_spelling-error-in-binary.patch</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">04-Fix-non-cross-build.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/gwama/-/compare/da764a86b8810067fc33ed4153a3127d4ece4cf4...b4cc842cbb95388814701edf56d8ca6186ec5a56#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">-include /usr/share/dpkg/buildtools.mk</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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4
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"># Don't override the upstream FLAG -O3</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -9,7 +10,7 @@ CXXFLAGS=$(shell dpkg-buildflags --get CXXFLAGS 2>/dev/null | sed -e 's/-O2//g')</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> <span class="idiff left right">make</span> CXXFLAGS="$(CXXFLAGS)"</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> <span class="idiff left right">dh_auto_build --</span> CXXFLAGS="$(CXXFLAGS)"</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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14
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">override_dh_installchangelogs:</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> # Install upstream log2.txt file as changelog</span>
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