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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/segemehl">Debian Med / segemehl</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/segemehl/-/commit/e4249723bdb24d3ded9a5de698e7e70f5f4e4600">e4249723</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-18T15:06:28+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not hardcode pkg-config to fix non cross-buildability
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/segemehl/-/commit/d844691a423024b1e97583436169520135c3c51a">d844691a</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-18T15:14:13+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/u/metadata: Update URLs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/segemehl/-/commit/2835fcd8e601071f5e3d3a4abac7af5fae357c29">2835fcd8</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-02-18T15:14:51+05:30</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#0d8181cd8c9dbe68093a8faf79725cbbd10e3e73">
<span class="new-file">
+
debian/patches/cross.patch
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</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/segemehl/-/compare/30fdb1b972aa2f8dd1f2725209da124b99e3a57a...2835fcd8e601071f5e3d3a4abac7af5fae357c29#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">segemehl (0.3.4-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Do not hardcode pkg-config to fix</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> non cross-buildability</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * d/u/metadata: Update URLs</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Nilesh Patra <npatra974@gmail.com> Thu, 18 Feb 2021 15:14:26 +0530</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">segemehl (0.3.4-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Fix typo in long description</span>
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<li id="0d8181cd8c9dbe68093a8faf79725cbbd10e3e73">
<a href="https://salsa.debian.org/med-team/segemehl/-/compare/30fdb1b972aa2f8dd1f2725209da124b99e3a57a...2835fcd8e601071f5e3d3a4abac7af5fae357c29#0d8181cd8c9dbe68093a8faf79725cbbd10e3e73"><strong>debian/patches/cross.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: Do not hardcode pkg-config to make package cross-buildable</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Nilesh Patra <npatra974@gmail.com></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2021-02-18</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"><span class="p">@@ -1,11 +1,12 @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> CC?=gcc</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> LD=${CC}</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+PKG_CONFIG ?= pkg-config</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> CFLAGS += -Wall -pedantic -std=c99 -g -O3 -DSORTEDUNMAPPED -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DDBGNFO -DSHOWALIGN -DDBGLEVEL=0 -DPROGNFO -Ilibs -Ilibs/sufarray -Isamtools</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CFLAGS += `pkg-config --cflags htslib`</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS += `$(PKG_CONFIG) --cflags htslib`</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> INC := -I include</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> CTAGS = ctags > tags</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"> LIB += -lm -lpthread -lz -lncurses -L libs -lform -lmenu -L/usr/local/lib/</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LIB += `pkg-config --libs htslib`</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LIB += `$(PKG_CONFIG) --libs htslib`</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> PRGTARGETS := segemehl haarz</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/30fdb1b972aa2f8dd1f2725209da124b99e3a57a...2835fcd8e601071f5e3d3a4abac7af5fae357c29#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">rpath.patch</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">cross.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/segemehl/-/compare/30fdb1b972aa2f8dd1f2725209da124b99e3a57a...2835fcd8e601071f5e3d3a4abac7af5fae357c29#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,9 +12,9 @@ Reference:</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> Pages: e1000502</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> DOI: 10.1371/journal.pcbi.1000502</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> PMID: 19750212</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> URL: "http://journals.plos.org/ploscompbiol/article?id=\</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> URL: "http<span class="idiff left right">s</span>://journals.plos.org/ploscompbiol/article?id=\</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> 10.1371/journal.pcbi.1000502"</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> eprint: "http://journals.plos.org/ploscompbiol/article/asset?id=\</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> eprint: "http<span class="idiff left right">s</span>://journals.plos.org/ploscompbiol/article/asset?id=\</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> 10.1371%2Fjournal.pcbi.1000502.PDF"</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> - Author: ></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> Steve Hoffmann and Christian Otto and Gero Doose and Andrea Tanzer and</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,9 +42,9 @@ Reference:</td>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> Pages: 1698-704</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> DOI: 10.1093/bioinformatics/bts254</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> PMID: 22581174</span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> URL: http<span class="idiff left right">://bioinformatics.oxfordjournals.org/content/28/13/1698</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> URL: http<span class="idiff left right">s://academic.oup.com/bioinformatics/article/28/13/1698/235152</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> eprint: ></span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> http<span class="idiff left right">://bioinformatics.oxfordjournals.org/content/28/13/1698.full.pdf+html</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> http<span class="idiff left right">s://academic.oup.com/bioinformatics/article-pdf/28/13/1698/641879/bts254.pdf</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext">Registry:</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> - Name: OMICtools</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> Entry: OMICS_00683</span>
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