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<h3>
Shruti Sridhar pushed to branch master
at <a href="https://salsa.debian.org/med-team/fastlink">Debian Med / fastlink</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/565ffced2adb22cfe68e2ee6a7ea42b6ab7fa6db">565ffced</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-02-22T01:25:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add autopkgtests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/9cd74b54c0314556e85d7ceb97e6fc40d7dfe1b4">9cd74b54</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-02-22T01:25:39+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add docs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/195bb66a835f8a4b7cf3f6fef783004026c6d8c6">195bb66a</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-02-22T01:28:09+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add data
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/34552a7aca16f1c149c1cb49b9e2afe3a0a71625">34552a7a</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-02-22T01:28:19+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add examples
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fastlink/-/commit/994afe56de484c4c88c672e8fbba20f01e8cce2b">994afe56</a></strong>
<div>
<span>by Shruti Sridhar</span>
<i>at 2021-02-22T01:32:25+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<span class="new-file">
+
debian/README.test
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</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c">
<span class="new-file">
+
debian/examples
</span>
</a>
</li>
<li class="file-stats">
<a href="#172404d82dd1903e527c0e2b13327f1f5cab7179">
debian/fastlink.docs
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</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
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<li class="file-stats">
<a href="#933254e427edb3bceb2dddc193a56b07651cfabe">
<span class="new-file">
+
debian/tests/data/datafile.dat
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</li>
<li class="file-stats">
<a href="#2cbc8923fe3cf52bf2b1f4311035a97036e56d62">
<span class="new-file">
+
debian/tests/data/pedfile.dat
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<span class="new-file">
+
debian/tests/run-unit-test
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</li>
</ul>
<h4>Changes:</h4>
<li id="f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Notes</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">how</span> <span class="n" style="color: #333;">this</span> <span class="n" style="color: #333;">package</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">tested</span><span class="mf" style="color: #099;">.</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">This</span> <span class="n" style="color: #333;">package</span> <span class="n" style="color: #333;">can</span> <span class="n" style="color: #333;">be</span> <span class="n" style="color: #333;">tested</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">running</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">provided</span> <span class="n" style="color: #333;">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="php"> <span class="n" style="color: #333;">sh</span> <span class="n" style="color: #333;">run</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">unit</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">test</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="php"></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="php"><span class="n" style="color: #333;">in</span> <span class="n" style="color: #333;">order</span> <span class="n" style="color: #333;">to</span> <span class="n" style="color: #333;">confirm</span> <span class="n" style="color: #333;">its</span> <span class="n" style="color: #333;">integrity</span><span class="mf" style="color: #099;">.</span></span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="php"></span>
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<td class="diff-line-num new new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Notes</span> <span class="n" style="color: #333;">on</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">files</span> <span class="n" style="color: #333;">used</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">testing</span> </span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Files</span><span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">debian</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">tests</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: 600;">/*</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="php"><span class="nc" style="color: #458; font-weight: 600;">Source</span><span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">https</span><span class="o" style="font-weight: 600;">://</span><span class="n" style="color: #333;">watson</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">hgen</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">pitt</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">edu</span><span class="o" style="font-weight: 600;">/</span><span class="n" style="color: #333;">docs</span><span class="o" style="font-weight: 600;">/</span><span class="nc" style="color: #458; font-weight: 600;">SLink</span><span class="mf" style="color: #099;">.</span><span class="n" style="color: #333;">html</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="php"></span></pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">fastlink (4.1P-fix100+dfsg-3ubuntu1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Add autopkgtests. Closes: #909713</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Add docs</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * Add data</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Add examples</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> -- Shruti Sridhar <shruti.sridhar99@gmail.com> Mon, 22 Feb 2021 01:30:24 +0530</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">fastlink (4.1P-fix100+dfsg-3) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> * Add fake watch file</span>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#9a14945e16c9144bd18a7ed182b1f8e4a2b50d7c"><strong>debian/examples</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">debian/tests/data/*</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#172404d82dd1903e527c0e2b13327f1f5cab7179"><strong>debian/fastlink.docs</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,3 +16,6 @@ README.trouble</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">README.unknown</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">README.updates </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">debian/fastlink.html</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">debian/README*</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">debian/tests/run-unit-test</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Depends: @</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#933254e427edb3bceb2dddc193a56b07651cfabe"><strong>debian/tests/data/datafile.dat</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3 0 0 5 << NO. OF LOCI, RISK LOCUS, SEXLINKED (IF 1) PROGRAM</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> 0 0.0 0.0 0 << MUT LOCUS, MUT MALE, MUT FEM, HAP FREQ (IF 1)</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> 1 3 2</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">3 3 << ALLELE NUMBERS, NO. OF ALLELES Locus p105-599Ha/TaqI</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> 0.320000 0.160000 0.520000 << GENE FREQUENCIES</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">1 2 << AFFECTION, NO. OF ALLELES Locus Schizophrenia</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> 0.991500 0.008500 << GENE FREQUENCIES</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> 3 << NO. OF LIABILITY CLASSES</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> 1.0000 0.1400 0.0000 Normal</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> 0.0000 0.8600 0.0000 Affected</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> 1.0000 0.0000 0.0000 Married in Normals << PENETRANCES</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">3 2 << ALLELE NUMBERS, NO. OF ALLELES Locus p105-153Ra/XbaI</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> 0.330000 0.670000 << GENE FREQUENCIES</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> 0 0 << SEX DIFFERENCE, INTERFERENCE (IF 1 OR 2)</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> 0.11970 0.12500 << RECOMBINATION VALUES</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> 2 0.12500 0.38000 << REC VARIED, INCREMENT, FINISHING VALUE</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#2cbc8923fe3cf52bf2b1f4311035a97036e56d62"><strong>debian/tests/data/pedfile.dat</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">1 1 0 0 3 0 0 1 1 1 3 2 3 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> 1 2 0 0 3 0 0 2 0 0 0 2 2 0 0 0 Linked Mk Unkno; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> 1 3 1 2 0 4 4 2 0 1 3 2 2 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> 1 4 1 2 0 5 5 2 0 1 3 2 1 1 1 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> 1 5 1 2 0 6 6 1 0 1 3 2 2 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> 1 6 1 2 0 7 7 2 0 3 3 2 1 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> 1 7 1 2 0 8 8 1 0 3 3 2 1 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> 1 8 1 2 0 9 9 1 0 1 1 2 2 1 1 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> 1 9 1 2 0 10 10 1 0 1 3 2 2 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> 1 12 1 2 0 13 13 1 0 1 1 2 2 2 1 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> 1 13 1 2 0 0 0 2 0 3 3 2 1 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> 1 14 11 10 0 15 15 2 0 1 3 2 1 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> 1 15 11 10 0 16 16 1 0 1 1 2 2 2 1 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> 1 16 11 10 0 17 17 1 0 1 3 2 2 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> 2 1 0 0 3 0 0 1 1 0 0 2 3 0 0 0 Linked Mk Unkno; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> 2 2 0 0 3 0 0 2 0 1 2 2 2 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> 2 3 1 2 0 4 4 2 0 1 1 2 2 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> 2 4 1 2 0 5 5 1 0 1 1 2 2 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> 2 5 1 2 0 6 6 1 0 1 1 2 2 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> 2 6 1 2 10 8 8 1 0 1 2 2 2 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> 2 7 0 0 10 0 0 2 0 3 3 2 3 1 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> 2 8 1 2 13 0 0 2 0 1 2 2 2 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> 2 9 0 0 13 0 0 1 0 1 3 2 3 2 1 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> 2 10 6 7 0 11 11 1 0 2 3 2 1 2 1 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> 2 11 6 7 0 12 12 1 0 2 3 2 1 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> 2 12 6 7 0 0 0 1 0 1 3 2 2 2 1 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> 2 13 9 8 0 14 14 1 0 1 2 2 1 2 2 2 Linked Mk Avail; Tr orig</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> 2 14 9 8 0 0 0 1 0 1 1 2 2 2 2 2 Linked Mk Avail; Tr orig</span></pre>
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<a href="https://salsa.debian.org/med-team/fastlink/-/compare/72a91f9f65385ce7c0f45f2834b5b823553e2464...994afe56de484c4c88c672e8fbba20f01e8cce2b#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span>fastlink</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="shell"><span class="nb" style="color: #0086b3;">export </span><span class="nv" style="color: #008080;">LC_ALL</span><span class="o" style="font-weight: 600;">=</span>C.UTF-8</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="si" style="color: #d14;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="si" style="color: #d14;">)</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="shell"></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="shell"></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell">unknown</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"95dc2997370f4f76928fd79e09a10a50 ipedfile.dat"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"30944ffa33e66c2923c1cd1d78112ec8 loopfile.dat"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"d8e8c1a3795eb42b23de343d992b1f7b newspeedfile.dat"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"8e461242dc9ebce4ff855790e1b2d349 speedfile.dat"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
</pre>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"></span>
</pre>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell">mlink <span class="o" style="font-weight: 600;">></span> linkage</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"7c26709e720f8232a5e204ff1b97e067 linkage"</span> <span class="o" style="font-weight: 600;">>></span> checksums </span>
</pre>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"></span>
</pre>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell">linkmap <span class="o" style="font-weight: 600;">></span> map </span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"8040c09d668a567ca1bc85ea8f10a67f map"</span> <span class="o" style="font-weight: 600;">>></span> checksums</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell">lodscore <span class="o" style="font-weight: 600;">></span> score</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-i</span> <span class="s1" style="color: #d14;">'3,18!d'</span> score</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"b20aea5b69fbf609153f1bcf427def36 score"</span> <span class="o" style="font-weight: 600;">>></span> checksums </span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"><span class="nb" style="color: #0086b3;">md5sum</span> <span class="nt" style="color: #000080;">--check</span> checksums </span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell"> </span></pre>
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