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GitLab

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<h3>

Andreas Tille pushed to branch upstream

at <a href="https://salsa.debian.org/med-team/epigrass">Debian Med / epigrass</a>

</h3>

<h4>

Commits:

</h4>

<ul>

<li>

<strong><a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0">8d3694db</a></strong>

<div>

<span>by Andreas Tille</span>

<i>at 2021-02-21T16:23:57+01:00</i>

</div>

<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 3.0.2+dfsg</pre>

</li>

</ul>

<h4>15 changed files:</h4>

<ul>

<li class="file-stats">

<a href="#548fac57ddfa356c5072478b1c189f97fa4ee7e3">

Epigrass/__version__.py

</a>

</li>

<li class="file-stats">

<a href="#9a2105f905e8921d15796e21919767115273c369">

<span class="deleted-file">

−

Epigrass/epidash.py

</span>

</a>

</li>

<li class="file-stats">

<a href="#dc6cfbc18080b5d9a879bda66c81073f4c6da6e8">

<span class="deleted-file">

−

Epigrass/epimodels.c

</span>

</a>

</li>

<li class="file-stats">

<a href="#44e6e33964907a047c8231a2eabdce941e418b64">

Epigrass/epipanel.py

</a>

</li>

<li class="file-stats">

<a href="#e88911ee004c535b44a6c240c3a8f1baaeab9aca">

Epigrass/manager.py

</a>

</li>

<li class="file-stats">

<a href="#da33cc54021b08972cbbfd1a7993f896db347b9e">

Epigrass/epimodels.py

→

Epigrass/models.py

</a>

</li>

<li class="file-stats">

<a href="#bb994b2c595b8a77db68c997e46a6474993db97e">

Epigrass/simobj.py

</a>

</li>

<li class="file-stats">

<a href="#bf1ab255d6dd6186839c380b8995503c3a467e70">

demos/rio.epg

</a>

</li>

<li class="file-stats">

<a href="#001c9365848443a72bfad63a2e687282da6b1cfb">

demos/spread.gml

</a>

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<li class="file-stats">

<a href="#58cf98b512fb33647e83c4e86591ca84a5cade11">

demos/spread.graphml

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<li class="file-stats">

<a href="#11f45ba9e6ffc98d0848fab1b5f3c511173a8eff">

demos/spread.json

</a>

</li>

<li class="file-stats">

<a href="#9107dcd6c0cef27fbbcfe1615d654a691cd5df9a">

docs/source/using.rst

</a>

</li>

<li class="file-stats">

<a href="#19359a61ae2446b51b549167b014da2fcf265768">

requirements.txt

</a>

</li>

<li class="file-stats">

<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">

setup.py

</a>

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<li class="file-stats">

<a href="#044905dfea3f67630cadcc66b454752c6685fc88">

tests/test_models.py

</a>

</li>

</ul>

<h4>Changes:</h4>

<li id="548fac57ddfa356c5072478b1c189f97fa4ee7e3">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#548fac57ddfa356c5072478b1c189f97fa4ee7e3"><strong>Epigrass/__version__.py</strong></a>

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1

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="python"><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"3.0"</span></span></pre>

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<pre style="margin: 0;">+<span id="LC1" class="line" lang="python"><span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"3.0<span class="idiff left right">.1</span>"</span></span></pre>

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<br>

</li>

<li id="9a2105f905e8921d15796e21919767115273c369">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#9a2105f905e8921d15796e21919767115273c369"><strong>Epigrass/epidash.py</strong>

deleted

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<pre style="margin: 0;">-<span id="LC1" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">dash</span></span>

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<pre style="margin: 0;">-<span id="LC2" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">dash_core_components</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">dcc</span></span>

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<pre style="margin: 0;">-<span id="LC3" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">dash_html_components</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">html</span></span>

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">dash.dependencies</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Input</span><span class="p">,</span> <span class="n" style="color: #333;">Output</span></span>

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<pre style="margin: 0;">-<span id="LC5" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">pandas</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">pd</span></span>

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">geopandas</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">gpd</span></span>

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">plotly.express</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">px</span></span>

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<pre style="margin: 0;">-<span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">json</span></span>

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">sqlalchemy</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">create_engine</span></span>

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<pre style="margin: 0;">-<span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">os</span><span class="p">,</span> <span class="n" style="color: #333;">glob</span></span>

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<pre style="margin: 0;">-<span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">functools</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">lru_cache</span></span>

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<pre style="margin: 0;">-<span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">warnings</span></span>

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<pre style="margin: 0;">-<span id="LC13" class="line" lang="python"><span class="n" style="color: #333;">warnings</span><span class="p">.</span><span class="n" style="color: #333;">filterwarnings</span><span class="p">(</span><span class="s" style="color: #d14;">'ignore'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC15" class="line" lang="python"><span class="n" style="color: #333;">is_epigrass_folder</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="s" style="color: #d14;">'Epigrass.sqlite'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC16" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC17" class="line" lang="python"><span class="n" style="color: #333;">maps</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">glob</span><span class="p">.</span><span class="n" style="color: #333;">glob</span><span class="p">(</span><span class="s" style="color: #d14;">'*.shp'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC18" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">maps</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python">    <span class="n" style="color: #333;">mapdf</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">gpd</span><span class="p">.</span><span class="n" style="color: #333;">read_file</span><span class="p">(</span><span class="s" style="color: #d14;">'Data.shp'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC20" class="line" lang="python">    <span class="n" style="color: #333;">mapdf</span><span class="p">.</span><span class="n" style="color: #333;">to_file</span><span class="p">(</span><span class="s" style="color: #d14;">'Data.geojson'</span><span class="p">,</span> <span class="n" style="color: #333;">driver</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'GeoJSON'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC21" class="line" lang="python">    <span class="n" style="color: #333;">mapjson</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">json</span><span class="p">.</span><span class="n" style="color: #333;">load</span><span class="p">(</span><span class="nb" style="color: #0086b3;">open</span><span class="p">(</span><span class="s" style="color: #d14;">'Data.geojson'</span><span class="p">,</span> <span class="s" style="color: #d14;">'r'</span><span class="p">))</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC22" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC23" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">lru_cache</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC24" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">load_sim</span><span class="p">(</span><span class="n" style="color: #333;">sim</span><span class="p">):</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC25" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">sim</span> <span class="ow" style="font-weight: 600;">is</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC26" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">pd</span><span class="p">.</span><span class="n" style="color: #333;">DataFrame</span><span class="p">(</span><span class="n" style="color: #333;">data</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'time'</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="mi" style="color: #099;">2</span><span class="p">),</span> <span class="s" style="color: #d14;">'name'</span><span class="p">:</span> <span class="mi" style="color: #099;">0</span><span class="p">})</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC27" class="line" lang="python">    <span class="n" style="color: #333;">con</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_engine</span><span class="p">(</span><span class="s" style="color: #d14;">'sqlite:///Epigrass.sqlite?check_same_thread=False'</span><span class="p">).</span><span class="n" style="color: #333;">connect</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python">    <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pd</span><span class="p">.</span><span class="n" style="color: #333;">read_sql_table</span><span class="p">(</span><span class="n" style="color: #333;">sim</span><span class="p">,</span> <span class="n" style="color: #333;">con</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC29" class="line" lang="python">    <span class="n" style="color: #333;">con</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC30" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">data</span></span>

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<pre style="margin: 0;">-<span id="LC31" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC32" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC33" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">get_sims</span><span class="p">():</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC34" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">is_epigrass_folder</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC35" class="line" lang="python">        <span class="n" style="color: #333;">con</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">create_engine</span><span class="p">(</span><span class="s" style="color: #d14;">'sqlite:///Epigrass.sqlite?check_same_thread=False'</span><span class="p">).</span><span class="n" style="color: #333;">connect</span><span class="p">()</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC36" class="line" lang="python">        <span class="n" style="color: #333;">sims</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">con</span><span class="p">.</span><span class="n" style="color: #333;">execute</span><span class="p">(</span><span class="s" style="color: #d14;">"SELECT name FROM sqlite_master WHERE type='table' ORDER BY name;"</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC37" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="p">[</span><span class="n" style="color: #333;">s</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">s</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">sims</span> <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="p">(</span><span class="n" style="color: #333;">s</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">endswith</span><span class="p">(</span><span class="s" style="color: #d14;">'_meta'</span><span class="p">)</span> <span class="ow" style="font-weight: 600;">or</span> <span class="n" style="color: #333;">s</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">].</span><span class="n" style="color: #333;">endswith</span><span class="p">(</span><span class="s" style="color: #d14;">'e'</span><span class="p">))]</span></span>

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<pre style="margin: 0;">-<span id="LC38" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="p">[</span><span class="s" style="color: #d14;">'No simulations found'</span><span class="p">]</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC40" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC41" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC42" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">generate_table</span><span class="p">(</span><span class="n" style="color: #333;">dataframe</span><span class="p">,</span> <span class="n" style="color: #333;">max_rows</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">10</span><span class="p">):</span></span>

</pre>

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC43" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Table</span><span class="p">(</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC44" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># Header</span></span>

</pre>

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC45" class="line" lang="python">        <span class="p">[</span><span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Tr</span><span class="p">([</span><span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Th</span><span class="p">(</span><span class="n" style="color: #333;">col</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">col</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">dataframe</span><span class="p">.</span><span class="n" style="color: #333;">columns</span><span class="p">])]</span> <span class="o" style="font-weight: 600;">+</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC46" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC47" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># Body</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC48" class="line" lang="python">        <span class="p">[</span><span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Tr</span><span class="p">([</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC49" class="line" lang="python">            <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Td</span><span class="p">(</span><span class="n" style="color: #333;">dataframe</span><span class="p">.</span><span class="n" style="color: #333;">iloc</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">][</span><span class="n" style="color: #333;">col</span><span class="p">])</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">col</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">dataframe</span><span class="p">.</span><span class="n" style="color: #333;">columns</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC50" class="line" lang="python">        <span class="p">])</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">i</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">range</span><span class="p">(</span><span class="nb" style="color: #0086b3;">min</span><span class="p">(</span><span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">dataframe</span><span class="p">),</span> <span class="n" style="color: #333;">max_rows</span><span class="p">))]</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC51" class="line" lang="python">    <span class="p">)</span></span>

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<pre style="margin: 0;">-<span id="LC52" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC53" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC54" class="line" lang="python"><span class="n" style="color: #333;">external_stylesheets</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="s" style="color: #d14;">'https://codepen.io/chriddyp/pen/bWLwgP.css'</span><span class="p">]</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC55" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC56" class="line" lang="python"><span class="n" style="color: #333;">app</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">dash</span><span class="p">.</span><span class="n" style="color: #333;">Dash</span><span class="p">(</span><span class="n" style="color: #333;">__name__</span><span class="p">,</span> <span class="n" style="color: #333;">external_stylesheets</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">external_stylesheets</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC57" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC58" class="line" lang="python"><span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">layout</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Div</span><span class="p">(</span><span class="n" style="color: #333;">children</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC59" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">H1</span><span class="p">(</span><span class="n" style="color: #333;">children</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'Epigrass Dashboard'</span><span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC60" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC61" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Div</span><span class="p">(</span><span class="n" style="color: #333;">children</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'''</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC62" class="line" lang="python"><span class="s" style="color: #d14;">        Visualize your Simulations.</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC63" class="line" lang="python"><span class="s" style="color: #d14;">    '''</span><span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC64" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">H3</span><span class="p">(</span><span class="s" style="color: #d14;">'Simulations:'</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC65" class="line" lang="python">    <span class="n" style="color: #333;">dcc</span><span class="p">.</span><span class="n" style="color: #333;">Dropdown</span><span class="p">(</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC66" class="line" lang="python">        <span class="nb" style="color: #0086b3;">id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-drop'</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC67" class="line" lang="python">        <span class="n" style="color: #333;">options</span><span class="o" style="font-weight: 600;">=</span><span class="p">[{</span><span class="s" style="color: #d14;">'label'</span><span class="p">:</span> <span class="n" style="color: #333;">s</span><span class="p">,</span> <span class="s" style="color: #d14;">'value'</span><span class="p">:</span> <span class="n" style="color: #333;">s</span><span class="p">}</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">s</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">get_sims</span><span class="p">()],</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC68" class="line" lang="python">    <span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC69" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Div</span><span class="p">(</span><span class="nb" style="color: #0086b3;">id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-table'</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC70" class="line" lang="python">    <span class="n" style="color: #333;">dcc</span><span class="p">.</span><span class="n" style="color: #333;">Loading</span><span class="p">(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC71" class="line" lang="python">        <span class="nb" style="color: #0086b3;">id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"loading-1"</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC72" class="line" lang="python">        <span class="nb" style="color: #0086b3;">type</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"default"</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC73" class="line" lang="python">        <span class="n" style="color: #333;">children</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Div</span><span class="p">(</span><span class="nb" style="color: #0086b3;">id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"sim-table-loading"</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC74" class="line" lang="python">    <span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC75" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Div</span><span class="p">(</span><span class="n" style="color: #333;">children</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC76" class="line" lang="python">        <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">B</span><span class="p">(</span><span class="s" style="color: #d14;">'Series:'</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC77" class="line" lang="python">        <span class="n" style="color: #333;">dcc</span><span class="p">.</span><span class="n" style="color: #333;">Dropdown</span><span class="p">(</span><span class="nb" style="color: #0086b3;">id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'columns'</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">searchable</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="p">)],</span> <span class="n" style="color: #333;">style</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'width'</span><span class="p">:</span> <span class="s" style="color: #d14;">'48%'</span><span class="p">,</span> <span class="s" style="color: #d14;">'display'</span><span class="p">:</span> <span class="s" style="color: #d14;">'inline-block'</span><span class="p">}),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC78" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">Div</span><span class="p">(</span><span class="n" style="color: #333;">children</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC79" class="line" lang="python">        <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">B</span><span class="p">(</span><span class="s" style="color: #d14;">'Localities:'</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC80" class="line" lang="python">        <span class="n" style="color: #333;">dcc</span><span class="p">.</span><span class="n" style="color: #333;">Dropdown</span><span class="p">(</span><span class="nb" style="color: #0086b3;">id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'localities'</span><span class="p">,</span> <span class="n" style="color: #333;">multi</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span> <span class="n" style="color: #333;">searchable</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC81" class="line" lang="python">    <span class="p">],</span> <span class="n" style="color: #333;">style</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'width'</span><span class="p">:</span> <span class="s" style="color: #d14;">'48%'</span><span class="p">,</span> <span class="s" style="color: #d14;">'display'</span><span class="p">:</span> <span class="s" style="color: #d14;">'inline-block'</span><span class="p">,</span> <span class="s" style="color: #d14;">'float'</span><span class="p">:</span> <span class="s" style="color: #d14;">'right'</span><span class="p">},</span> <span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC82" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">H3</span><span class="p">(</span><span class="s" style="color: #d14;">'Series:'</span><span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC83" class="line" lang="python">    <span class="n" style="color: #333;">dcc</span><span class="p">.</span><span class="n" style="color: #333;">Graph</span><span class="p">(</span><span class="nb" style="color: #0086b3;">id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'series-plot'</span><span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC84" class="line" lang="python">    <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">H3</span><span class="p">(</span><span class="s" style="color: #d14;">'Map:'</span><span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC85" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># dcc.Loading(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC86" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#     id="loading-map",</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC87" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#     type="default",</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC88" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;">#     children=html.Div(id="map-loading")</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC89" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># ),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC90" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># dcc.Graph(id='bubble-map'),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC91" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC92" class="line" lang="python"><span class="p">])</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC93" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC94" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC95" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">## Callbacks</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC96" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC97" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">callback</span><span class="p">(</span><span class="n" style="color: #333;">Output</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-table'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'children'</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC98" class="line" lang="python">    <span class="p">[</span><span class="n" style="color: #333;">Input</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-drop'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">)]</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC99" class="line" lang="python"><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC100" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">update_sim_table</span><span class="p">(</span><span class="n" style="color: #333;">sim_name</span><span class="p">):</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC101" class="line" lang="python">    <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>

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<pre style="margin: 0;">-<span id="LC102" class="line" lang="python">        <span class="n" style="color: #333;">df</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">load_sim</span><span class="p">(</span><span class="n" style="color: #333;">sim_name</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC103" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">generate_table</span><span class="p">(</span><span class="n" style="color: #333;">df</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC104" class="line" lang="python">    <span class="k" style="font-weight: 600;">except</span> <span class="nb" style="color: #0086b3;">TypeError</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>

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<td class="diff-line-num old old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC105" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">html</span><span class="p">.</span><span class="n" style="color: #333;">P</span><span class="p">(</span><span class="s" style="color: #d14;">'No data'</span><span class="p">)</span></span>

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<td class="diff-line-num old old_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC106" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC107" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">callback</span><span class="p">(</span><span class="n" style="color: #333;">Output</span><span class="p">(</span><span class="s" style="color: #d14;">"sim-table-loading"</span><span class="p">,</span> <span class="s" style="color: #d14;">"children"</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC108" class="line" lang="python">              <span class="p">[</span><span class="n" style="color: #333;">Input</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-drop'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">)])</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC109" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">table_spinner</span><span class="p">(</span><span class="n" style="color: #333;">value</span><span class="p">):</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC110" class="line" lang="python">    <span class="k" style="font-weight: 600;">pass</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC111" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC112" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># @app.callback(Output("map-loading", "children"),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC113" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#               [Input(component_id='sim-drop', component_property='value')])</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC114" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># def map_spinner(value):</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC115" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#     pass</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC116" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC117" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">callback</span><span class="p">(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC118" class="line" lang="python">    <span class="n" style="color: #333;">Output</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'series-plot'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'figure'</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC119" class="line" lang="python">    <span class="p">[</span><span class="n" style="color: #333;">Input</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'columns'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC120" class="line" lang="python">     <span class="n" style="color: #333;">Input</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-drop'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">),</span></span>

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<pre style="margin: 0;">-<span id="LC121" class="line" lang="python">     <span class="n" style="color: #333;">Input</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'localities'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">)]</span></span>

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<pre style="margin: 0;">-<span id="LC122" class="line" lang="python"><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC123" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">update_series_plot</span><span class="p">(</span><span class="n" style="color: #333;">columns_selected</span><span class="p">,</span> <span class="n" style="color: #333;">sim_name</span><span class="p">,</span> <span class="n" style="color: #333;">localities</span><span class="p">):</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC124" class="line" lang="python">    <span class="n" style="color: #333;">df</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">load_sim</span><span class="p">(</span><span class="n" style="color: #333;">sim_name</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC125" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">localities</span> <span class="ow" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">localities</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span> <span class="ow" style="font-weight: 600;">is</span> <span class="ow" style="font-weight: 600;">not</span> <span class="bp" style="color: #999;">None</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC126" class="line" lang="python">        <span class="n" style="color: #333;">df</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">df</span><span class="p">[</span><span class="n" style="color: #333;">df</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">.</span><span class="n" style="color: #333;">isin</span><span class="p">(</span><span class="n" style="color: #333;">localities</span><span class="p">)]</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC127" class="line" lang="python">    <span class="n" style="color: #333;">tf</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">df</span><span class="p">.</span><span class="n" style="color: #333;">time</span><span class="p">.</span><span class="nb" style="color: #0086b3;">max</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC128" class="line" lang="python">    <span class="n" style="color: #333;">traces</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[]</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC129" class="line" lang="python">    <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">columns_selected</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC130" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="ow" style="font-weight: 600;">not</span> <span class="n" style="color: #333;">cols</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC131" class="line" lang="python">        <span class="n" style="color: #333;">cols</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">df</span><span class="p">.</span><span class="n" style="color: #333;">columns</span><span class="p">[</span><span class="mi" style="color: #099;">5</span><span class="p">:</span><span class="mi" style="color: #099;">7</span><span class="p">]</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC132" class="line" lang="python">    <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">c</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">cols</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC133" class="line" lang="python">        <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">c</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="s" style="color: #d14;">'geocode,'</span>    <span class="s" style="color: #d14;">'time'</span><span class="p">,</span> <span class="s" style="color: #d14;">'name'</span><span class="p">,</span> <span class="s" style="color: #d14;">'lat'</span><span class="p">,</span> <span class="s" style="color: #d14;">'longit'</span><span class="p">]:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC134" class="line" lang="python">            <span class="k" style="font-weight: 600;">continue</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC135" class="line" lang="python">        <span class="n" style="color: #333;">traces</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span></span>

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<td class="diff-line-num old old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC136" class="line" lang="python">            <span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">df</span><span class="p">.</span><span class="n" style="color: #333;">time</span><span class="p">,</span></span>

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<td class="diff-line-num old old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC137" class="line" lang="python">            <span class="n" style="color: #333;">y</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">df</span><span class="p">[</span><span class="n" style="color: #333;">c</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC138" class="line" lang="python">            <span class="n" style="color: #333;">text</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">df</span><span class="p">[</span><span class="s" style="color: #d14;">'name'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

139

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC139" class="line" lang="python">            <span class="n" style="color: #333;">mode</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'line'</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

140

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC140" class="line" lang="python">            <span class="n" style="color: #333;">opacity</span><span class="o" style="font-weight: 600;">=</span><span class="mf" style="color: #099;">0.7</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

141

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC141" class="line" lang="python">            <span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">c</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC142" class="line" lang="python">        <span class="p">))</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC143" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="p">{</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC144" class="line" lang="python">        <span class="s" style="color: #d14;">'data'</span><span class="p">:</span> <span class="n" style="color: #333;">traces</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC145" class="line" lang="python">        <span class="s" style="color: #d14;">'layout'</span><span class="p">:</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC146" class="line" lang="python">            <span class="n" style="color: #333;">xaxis</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'type'</span><span class="p">:</span> <span class="s" style="color: #d14;">'linear'</span><span class="p">,</span> <span class="s" style="color: #d14;">'title'</span><span class="p">:</span> <span class="s" style="color: #d14;">'time'</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC147" class="line" lang="python">                   <span class="s" style="color: #d14;">'range'</span><span class="p">:</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">tf</span><span class="p">]},</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC148" class="line" lang="python">            <span class="n" style="color: #333;">yaxis</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'title'</span><span class="p">:</span> <span class="s" style="color: #d14;">'Individuals'</span><span class="p">},</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC149" class="line" lang="python">            <span class="n" style="color: #333;">margin</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'l'</span><span class="p">:</span> <span class="mi" style="color: #099;">40</span><span class="p">,</span> <span class="s" style="color: #d14;">'b'</span><span class="p">:</span> <span class="mi" style="color: #099;">40</span><span class="p">,</span> <span class="s" style="color: #d14;">'t'</span><span class="p">:</span> <span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="s" style="color: #d14;">'r'</span><span class="p">:</span> <span class="mi" style="color: #099;">10</span><span class="p">},</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC150" class="line" lang="python">            <span class="n" style="color: #333;">legend</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'x'</span><span class="p">:</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="s" style="color: #d14;">'y'</span><span class="p">:</span> <span class="mi" style="color: #099;">1</span><span class="p">},</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC151" class="line" lang="python">            <span class="n" style="color: #333;">hovermode</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'closest'</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">

<pre style="margin: 0;">-<span id="LC152" class="line" lang="python">            <span class="n" style="color: #333;">transition</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">'duration'</span><span class="p">:</span> <span class="mi" style="color: #099;">500</span><span class="p">},</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC153" class="line" lang="python">        <span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC154" class="line" lang="python">    <span class="p">}</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC155" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC156" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC157" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">callback</span><span class="p">(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC158" class="line" lang="python">    <span class="n" style="color: #333;">Output</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'columns'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'options'</span><span class="p">),</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC159" class="line" lang="python">    <span class="p">[</span><span class="n" style="color: #333;">Input</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-drop'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">)]</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC160" class="line" lang="python"><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC161" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">fill_columns</span><span class="p">(</span><span class="n" style="color: #333;">sim_name</span><span class="p">):</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC162" class="line" lang="python">    <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC163" class="line" lang="python">        <span class="n" style="color: #333;">df</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">load_sim</span><span class="p">(</span><span class="n" style="color: #333;">sim_name</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC164" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="p">[{</span><span class="s" style="color: #d14;">'label'</span><span class="p">:</span> <span class="n" style="color: #333;">c</span><span class="p">,</span> <span class="s" style="color: #d14;">'value'</span><span class="p">:</span> <span class="n" style="color: #333;">c</span><span class="p">}</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">c</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">df</span><span class="p">.</span><span class="n" style="color: #333;">columns</span> <span class="k" style="font-weight: 600;">if</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC165" class="line" lang="python">                <span class="n" style="color: #333;">c</span> <span class="ow" style="font-weight: 600;">not</span> <span class="ow" style="font-weight: 600;">in</span> <span class="p">[</span><span class="s" style="color: #d14;">'geocode,'</span>    <span class="s" style="color: #d14;">'time'</span><span class="p">,</span> <span class="s" style="color: #d14;">'name'</span><span class="p">,</span> <span class="s" style="color: #d14;">'lat'</span><span class="p">,</span> <span class="s" style="color: #d14;">'longit'</span><span class="p">]]</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC166" class="line" lang="python">    <span class="k" style="font-weight: 600;">except</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">TypeError</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC167" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="p">[]</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC168" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC169" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">-<span id="LC170" class="line" lang="python"><span class="o" style="font-weight: 600;">@</span><span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">callback</span><span class="p">(</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC171" class="line" lang="python">    <span class="n" style="color: #333;">Output</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'localities'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'options'</span><span class="p">),</span></span>

</pre>

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<pre style="margin: 0;">-<span id="LC172" class="line" lang="python">    <span class="p">[</span><span class="n" style="color: #333;">Input</span><span class="p">(</span><span class="n" style="color: #333;">component_id</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'sim-drop'</span><span class="p">,</span> <span class="n" style="color: #333;">component_property</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'value'</span><span class="p">)]</span></span>

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<pre style="margin: 0;">-<span id="LC173" class="line" lang="python"><span class="p">)</span></span>

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<pre style="margin: 0;">-<span id="LC174" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">fill_localities</span><span class="p">(</span><span class="n" style="color: #333;">sim_name</span><span class="p">):</span></span>

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<pre style="margin: 0;">-<span id="LC175" class="line" lang="python">    <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>

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<pre style="margin: 0;">-<span id="LC176" class="line" lang="python">        <span class="n" style="color: #333;">df</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">load_sim</span><span class="p">(</span><span class="n" style="color: #333;">sim_name</span><span class="p">)</span></span>

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<pre style="margin: 0;">-<span id="LC177" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="p">[{</span><span class="s" style="color: #d14;">'label'</span><span class="p">:</span> <span class="n" style="color: #333;">c</span><span class="p">,</span> <span class="s" style="color: #d14;">'value'</span><span class="p">:</span> <span class="n" style="color: #333;">c</span><span class="p">}</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">c</span> <span class="ow" style="font-weight: 600;">in</span> <span class="nb" style="color: #0086b3;">set</span><span class="p">(</span><span class="n" style="color: #333;">df</span><span class="p">.</span><span class="n" style="color: #333;">name</span><span class="p">)]</span></span>

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<pre style="margin: 0;">-<span id="LC178" class="line" lang="python">    <span class="k" style="font-weight: 600;">except</span> <span class="p">(</span><span class="nb" style="color: #0086b3;">TypeError</span><span class="p">,</span> <span class="nb" style="color: #0086b3;">ValueError</span><span class="p">)</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">e</span><span class="p">:</span></span>

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<pre style="margin: 0;">-<span id="LC179" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="p">[]</span></span>

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<pre style="margin: 0;">-<span id="LC180" class="line" lang="python"></span>

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<pre style="margin: 0;">-<span id="LC181" class="line" lang="python"></span>

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<pre style="margin: 0;">-<span id="LC182" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># @app.callback(</span></span>

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<pre style="margin: 0;">-<span id="LC183" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#     Output(component_id='bubble-map', component_property='figure'),</span></span>

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<pre style="margin: 0;">-<span id="LC184" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#     [Input(component_id='sim-drop', component_property='value')]</span></span>

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<pre style="margin: 0;">-<span id="LC185" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># )</span></span>

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<pre style="margin: 0;">-<span id="LC186" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># def draw_bubble_map(val):</span></span>

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<pre style="margin: 0;">-<span id="LC187" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#     fig = None</span></span>

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<pre style="margin: 0;">-<span id="LC188" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#     if maps:</span></span>

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<pre style="margin: 0;">-<span id="LC189" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#         namecol = mapdf.columns[0]</span></span>

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<pre style="margin: 0;">-<span id="LC190" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#         locations = mapdf.columns[1]</span></span>

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<pre style="margin: 0;">-<span id="LC191" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#         fig = px.choropleth(mapdf, geojson=mapjson, locations=locations, color='prevalence', hover_name=namecol,</span></span>

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<pre style="margin: 0;">-<span id="LC192" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                             hover_data=['prevalence'],</span></span>

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<pre style="margin: 0;">-<span id="LC193" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                             color_continuous_scale='viridis', scope='south america'</span></span>

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<pre style="margin: 0;">-<span id="LC194" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                             )</span></span>

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<pre style="margin: 0;">-<span id="LC195" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#     return fig</span></span>

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<pre style="margin: 0;">-<span id="LC196" class="line" lang="python"></span>

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<pre style="margin: 0;">-<span id="LC197" class="line" lang="python"></span>

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<pre style="margin: 0;">-<span id="LC198" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">main</span><span class="p">():</span></span>

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<pre style="margin: 0;">-<span id="LC199" class="line" lang="python">    <span class="n" style="color: #333;">app</span><span class="p">.</span><span class="n" style="color: #333;">run_server</span><span class="p">(</span><span class="n" style="color: #333;">debug</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>

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<pre style="margin: 0;">-<span id="LC200" class="line" lang="python"></span>

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<pre style="margin: 0;">-<span id="LC201" class="line" lang="python"></span>

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<pre style="margin: 0;">-<span id="LC202" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'__main__'</span><span class="p">:</span></span>

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<pre style="margin: 0;">-<span id="LC203" class="line" lang="python">    <span class="n" style="color: #333;">main</span><span class="p">()</span></span></pre>

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<br>

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<li id="dc6cfbc18080b5d9a879bda66c81073f4c6da6e8">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#dc6cfbc18080b5d9a879bda66c81073f4c6da6e8"><strong>Epigrass/epimodels.c</strong>

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<li id="44e6e33964907a047c8231a2eabdce941e418b64">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#44e6e33964907a047c8231a2eabdce941e418b64"><strong>Epigrass/epipanel.py</strong></a>

<hr>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,6 +10,7 @@ import hvplot.pandas</td>

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">holoviews</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">hv</span></span>

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">geoviews</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">gv</span></span>

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">holoviews.operation.datashader</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">datashade</span><span class="p">,</span> <span class="n" style="color: #333;">bundle_graph</span></span>

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<pre style="margin: 0;">+<span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">datashader.bundling</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">hammer_bundle</span></span>

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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">holoviews</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">opts</span></span>

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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">bokeh.resources</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">INLINE</span></span>

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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">param</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="50" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,9 +51,10 @@ def get_sims(fname):</td>

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<pre style="margin: 0;"> <span id="LC51" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">get_graph</span><span class="p">(</span><span class="n" style="color: #333;">pth</span><span class="p">):</span></span>

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<pre style="margin: 0;"> <span id="LC52" class="line" lang="python">    <span class="n" style="color: #333;">full_path</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">abspath</span><span class="p">(</span><span class="n" style="color: #333;">pth</span><span class="p">),</span> <span class="s" style="color: #d14;">'network.gml'</span><span class="p">)</span></span>

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<pre style="margin: 0;"> <span id="LC53" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">exists</span><span class="p">(</span><span class="n" style="color: #333;">full_path</span><span class="p">):</span></span>

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<td class="diff-line-num old old_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC53" class="line" lang="python">        <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">NX</span><span class="p">.</span><span class="n" style="color: #333;">read_gml</span><span class="p">(</span><span class="n" style="color: #333;">full_path</span><span class="p">)</span></span>

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<td class="diff-line-num new new_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC54" class="line" lang="python">        <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">NX</span><span class="p">.</span><span class="n" style="color: #333;">read_gml</span><span class="p">(</span><span class="n" style="color: #333;">full_path</span><span class="p"><span class="idiff left">,</span></span><span class="n" style="color: #333;"><span class="idiff">destringizer</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="nb" style="color: #0086b3;"><span class="idiff right">int</span></span><span class="p">)</span></span>

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<pre style="margin: 0;"> <span id="LC55" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

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<pre style="margin: 0;"> <span id="LC56" class="line" lang="python">        <span class="n" style="color: #333;">G</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">NX</span><span class="p">.</span><span class="n" style="color: #333;">MultiDiGraph</span><span class="p">()</span></span>

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<td class="diff-line-num new new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC57" class="line" lang="python"></span>

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<td class="diff-line-num old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC58" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">G</span></span>

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<td class="diff-line-num new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC59" class="line" lang="python"></span>

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<td class="diff-line-num new_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC60" class="line" lang="python"></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -118,7 +120,7 @@ def get_subgraph(G, node):</td>

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<pre style="margin: 0;"> <span id="LC120" class="line" lang="python"><span class="s" style="color: #d14;">    :param node: node defining the subgraph</span></span>

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<pre style="margin: 0;"> <span id="LC121" class="line" lang="python"><span class="s" style="color: #d14;">    """</span></span>

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<pre style="margin: 0;"> <span id="LC122" class="line" lang="python">    <span class="n" style="color: #333;">nodes</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="n" style="color: #333;">node</span><span class="p">]</span></span>

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<td class="diff-line-num new_line old" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC121" class="line" lang="python">    <span class="n" style="color: #333;">nodes</span><span class="p">.</span><span class="n" style="color: #333;">extend</span><span class="p">(</span><span class="nb" style="color: #0086b3;"><span class="idiff left">list</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">G</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">neighbors</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">node</span></span><span class="p"><span class="idiff right">))</span>)</span></span>

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<pre style="margin: 0;">+<span id="LC123" class="line" lang="python">    <span class="n" style="color: #333;">nodes</span><span class="p">.</span><span class="n" style="color: #333;">extend</span><span class="p">(<span class="idiff left">[</span></span><span class="nb" style="color: #0086b3;"><span class="idiff">int</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">n</span></span><span class="p"><span class="idiff">)</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">for</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">n</span></span><span class="idiff"> </span><span class="ow" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">G</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">neighbors</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">node</span></span><span class="p"><span class="idiff right">)]</span>)</span></span>

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<pre style="margin: 0;"> <span id="LC124" class="line" lang="python">    <span class="n" style="color: #333;">H</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">G</span><span class="p">.</span><span class="n" style="color: #333;">subgraph</span><span class="p">(</span><span class="n" style="color: #333;">nodes</span><span class="p">).</span><span class="n" style="color: #333;">copy</span><span class="p">()</span></span>

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<pre style="margin: 0;"> <span id="LC125" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">H</span></span>

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<pre style="margin: 0;"> <span id="LC126" class="line" lang="python"></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -177,7 +179,7 @@ class SeriesViewer(param.Parameterized):</td>

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<pre style="margin: 0;"> <span id="LC179" class="line" lang="python"><span class="s" style="color: #d14;">### Model Type</span></span>

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<pre style="margin: 0;"> <span id="LC180" class="line" lang="python"><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">df</span><span class="p">[</span><span class="s" style="color: #d14;">'epidemiological_model$modtype'</span><span class="p">].</span><span class="n" style="color: #333;">iloc</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">]</span><span class="si" style="color: #d14;">}</span></span>

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<pre style="margin: 0;"> <span id="LC181" class="line" lang="python"><span class="s" style="color: #d14;">### Epidemic Events</span></span>

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<pre style="margin: 0;">-<span id="LC180" class="line" lang="python"><span class="s" style="color: #d14;">Seed: </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">df</span><span class="p">[</span><span class="s" style="color: #d14;">'epidemic_events$seed'</span><span class="p">]</span><span class="si" style="color: #d14;">}</span></span>

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<pre style="margin: 0;">+<span id="LC182" class="line" lang="python"><span class="s" style="color: #d14;">Seed: </span><span class="si" style="color: #d14;">{</span><span class="n" style="color: #333;">df</span><span class="p">[</span><span class="s" style="color: #d14;">'epidemic_events$seed'</span><span class="p">]<span class="idiff left">.</span></span><span class="n" style="color: #333;"><span class="idiff">iloc</span></span><span class="p"><span class="idiff">[</span></span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="p"><span class="idiff right">]</span></span><span class="si" style="color: #d14;">}</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC183" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC184" class="line" lang="python"><span class="s" style="color: #d14;">"""</span></span>

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<pre style="margin: 0;"> <span id="LC185" class="line" lang="python">            <span class="p">)</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="246" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="248" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -246,7 +248,7 @@ Seed: {df['epidemic_events$seed']}</td>

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<pre style="margin: 0;"> <span id="LC248" class="line" lang="python">        <span class="n" style="color: #333;">partial_map</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">partial_map</span><span class="p">.</span><span class="n" style="color: #333;">to_crs</span><span class="p">(</span><span class="mi" style="color: #099;">3857</span><span class="p">)</span>  <span class="c1" style="color: #998; font-style: italic;"># Converting to web mercator</span></span>

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<pre style="margin: 0;"> <span id="LC249" class="line" lang="python">        <span class="n" style="color: #333;">centroids</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[(</span><span class="n" style="color: #333;">c</span><span class="p">.</span><span class="n" style="color: #333;">x</span><span class="p">,</span> <span class="n" style="color: #333;">c</span><span class="p">.</span><span class="n" style="color: #333;">y</span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">c</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">partial_map</span><span class="p">.</span><span class="n" style="color: #333;">centroid</span><span class="p">]</span></span>

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<pre style="margin: 0;"> <span id="LC250" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># Draw the graph using Altair</span></span>

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<pre style="margin: 0;">-<span id="LC249" class="line" lang="python">        <span class="n" style="color: #333;">gcs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="nb" style="color: #0086b3;"><span class="idiff left">str</span></span><span class="p"><span class="idiff">(</span></span><span class="nb" style="color: #0086b3;"><span class="idiff">int</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">gc</span></span><span class="p"><span class="idiff right">)</span>)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">gc</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">partial_map</span><span class="p">.</span><span class="n" style="color: #333;">geocode</span><span class="p">]</span></span>

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<pre style="margin: 0;">+<span id="LC251" class="line" lang="python">        <span class="n" style="color: #333;">gcs</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">[</span><span class="nb" style="color: #0086b3;"><span class="idiff left">int</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">gc</span></span><span class="p">)</span> <span class="k" style="font-weight: 600;">for</span> <span class="n" style="color: #333;">gc</span> <span class="ow" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">partial_map</span><span class="p">.</span><span class="n" style="color: #333;">geocode</span><span class="p">]</span></span>

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<pre style="margin: 0;"> <span id="LC252" class="line" lang="python">        <span class="n" style="color: #333;">pos</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">dict</span><span class="p">(</span><span class="nb" style="color: #0086b3;">zip</span><span class="p">(</span><span class="n" style="color: #333;">gcs</span><span class="p">,</span> <span class="n" style="color: #333;">centroids</span><span class="p">))</span></span>

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<td class="diff-line-num new_line" data-linenumber="253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC253" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC254" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># viz = nxa.draw_networkx(</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="336" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -336,7 +338,7 @@ Seed: {df['epidemic_events$seed']}</td>

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<pre style="margin: 0;"> <span id="LC338" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC339" class="line" lang="python">        <span class="n" style="color: #333;">base</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">alt</span><span class="p">.</span><span class="n" style="color: #333;">Chart</span><span class="p">(</span><span class="n" style="color: #333;">df</span><span class="p">).</span><span class="n" style="color: #333;">mark_line</span><span class="p">(</span><span class="n" style="color: #333;">interpolate</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'step-after'</span><span class="p">).</span><span class="n" style="color: #333;">encode</span><span class="p">(</span></span>

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<pre style="margin: 0;"> <span id="LC340" class="line" lang="python">            <span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'time:Q'</span><span class="p">,</span></span>

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<pre style="margin: 0;">-<span id="LC339" class="line" lang="python">            <span class="n" style="color: #333;">y</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'incidence:Q'</span><span class="p"><span class="idiff left right">,</span></span></span>

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<pre style="margin: 0;">+<span id="LC341" class="line" lang="python">            <span class="n" style="color: #333;">y</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'incidence:Q'</span></span>

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<pre style="margin: 0;"> <span id="LC342" class="line" lang="python">        <span class="p">).</span><span class="n" style="color: #333;">properties</span><span class="p">(</span></span>

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<pre style="margin: 0;"> <span id="LC343" class="line" lang="python">            <span class="n" style="color: #333;">width</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'container'</span><span class="p">,</span></span>

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<pre style="margin: 0;"> <span id="LC344" class="line" lang="python">            <span class="n" style="color: #333;">height</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">300</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="347" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -347,7 +349,7 @@ Seed: {df['epidemic_events$seed']}</td>

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<pre style="margin: 0;"> <span id="LC349" class="line" lang="python">            <span class="n" style="color: #333;">row</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">alt</span><span class="p">.</span><span class="n" style="color: #333;">hconcat</span><span class="p">()</span></span>

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<pre style="margin: 0;"> <span id="LC350" class="line" lang="python">            <span class="n" style="color: #333;">row</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">base</span><span class="p">.</span><span class="n" style="color: #333;">encode</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'time'</span><span class="p">,</span> <span class="n" style="color: #333;">y</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">y_enc</span><span class="p">)</span></span>

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<pre style="margin: 0;"> <span id="LC351" class="line" lang="python">            <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="nb" style="color: #0086b3;">len</span><span class="p">(</span><span class="n" style="color: #333;">variables</span><span class="p">):</span></span>

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<pre style="margin: 0;">-<span id="LC350" class="line" lang="python">                <span class="n" style="color: #333;">row</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">base</span><span class="p">.</span><span class="n" style="color: #333;">encode</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'time'</span><span class="p">,</span> <span class="n" style="color: #333;">y</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">variables</span><span class="p">[</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">])</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="352" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC352" class="line" lang="python">                <span class="n" style="color: #333;">row</span> <span class="o" style="font-weight: 600;">|=</span> <span class="n" style="color: #333;">base</span><span class="p">.</span><span class="n" style="color: #333;">encode</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'time'</span><span class="p">,</span> <span class="n" style="color: #333;">y</span><span class="o" style="font-weight: 600;">=</span><span class="n" style="color: #333;">variables</span><span class="p">[</span><span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">+</span> <span class="mi" style="color: #099;">1</span><span class="p">]<span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tooltip</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="p"><span class="idiff">[</span></span><span class="s" style="color: #d14;"><span class="idiff">'time'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'incidence'</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">'Infectious'</span></span><span class="p"><span class="idiff right">]</span>)</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC353" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;"> <span id="LC354" class="line" lang="python">            <span class="n" style="color: #333;">chart</span> <span class="o" style="font-weight: 600;">&=</span> <span class="n" style="color: #333;">row</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC355" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">chart</span></span>

</pre>

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<br>

</li>

<li id="e88911ee004c535b44a6c240c3a8f1baaeab9aca">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#e88911ee004c535b44a6c240c3a8f1baaeab9aca"><strong>Epigrass/manager.py</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1048" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1048,15 +1048,18 @@ def main():</td>

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<pre style="margin: 0;"> <span id="LC1048" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;"> <span id="LC1049" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="1050" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC1050" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">end_pools</span><span class="p">():</span></span>

</pre>

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<td class="diff-line-num new_line old" data-linenumber="1051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1051" class="line" lang="python">    <span class="n" style="color: #333;">PO</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="1052" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="1051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1052" class="line" lang="python">    <span class="n" style="color: #333;">PO</span><span class="p">.</span><span class="n" style="color: #333;">terminate</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="1053" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="1051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1053" class="line" lang="python">    <span class="n" style="color: #333;">simobj</span><span class="p">.</span><span class="n" style="color: #333;">PO</span><span class="p">.</span><span class="n" style="color: #333;">close</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="1054" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="1051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1054" class="line" lang="python">    <span class="n" style="color: #333;">simobj</span><span class="p">.</span><span class="n" style="color: #333;">PO</span><span class="p">.</span><span class="n" style="color: #333;">terminate</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="1051" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC1051" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># PO.close()</span></span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="1052" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC1052" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># PO.terminate()</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC1053" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># simobj.PO.close()</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC1054" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># simobj.PO.terminate()</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC1055" class="line" lang="python"></span>

</pre>

</td>

</tr>

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<td class="diff-line-num new old_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="1056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1056

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC1056" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># kill all subprocesses</span></span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="1057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1057

</td>

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<pre style="margin: 0;">+<span id="LC1057" class="line" lang="python">    <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">killpg</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">getpid</span><span class="p">(),</span> <span class="n" style="color: #333;">signal</span><span class="p">.</span><span class="n" style="color: #333;">SIGTERM</span><span class="p">)</span></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="1055" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1055

</td>

<td class="diff-line-num new_line" data-linenumber="1058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1058

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1058" class="line" lang="python"></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="1056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1056

</td>

<td class="diff-line-num new_line" data-linenumber="1059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1059

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1059" class="line" lang="python"></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="1057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1057

</td>

<td class="diff-line-num new_line" data-linenumber="1060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1060

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<pre style="margin: 0;"> <span id="LC1060" class="line" lang="python"><span class="n" style="color: #333;">PO</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">multiprocessing</span><span class="p">.</span><span class="n" style="color: #333;">Pool</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="1058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1058

</td>

<td class="diff-line-num new_line" data-linenumber="1061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1061

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<pre style="margin: 0;"> <span id="LC1061" class="line" lang="python"><span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">__name__</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">'__main__'</span><span class="p">:</span></span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="1059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

1059

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<td class="diff-line-num new_line old" data-linenumber="1062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC1059" class="line" lang="python">    <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">atexit</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="1060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="1062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

1062

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<pre style="margin: 0;">+<span id="LC1062" class="line" lang="python">    <span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">atexit</span><span class="p"><span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">signal</span></span></span>

</pre>

</td>

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<td class="diff-line-num old_line" data-linenumber="1060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1060

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<td class="diff-line-num new_line" data-linenumber="1063" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1063

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC1063" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="1061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1061

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<td class="diff-line-num new_line" data-linenumber="1064" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1064

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<pre style="margin: 0;"> <span id="LC1064" class="line" lang="python">    <span class="n" style="color: #333;">atexit</span><span class="p">.</span><span class="n" style="color: #333;">register</span><span class="p">(</span><span class="n" style="color: #333;">end_pools</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="1062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1062

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<td class="diff-line-num new_line" data-linenumber="1065" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1065

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<pre style="margin: 0;"> <span id="LC1065" class="line" lang="python">    <span class="n" style="color: #333;">main</span><span class="p">()</span></span></pre>

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<br>

</li>

<li id="da33cc54021b08972cbbfd1a7993f896db347b9e">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#da33cc54021b08972cbbfd1a7993f896db347b9e"><strong>Epigrass/epimodels.py</strong>

→

<strong>Epigrass/models.py</strong>

</a>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,7 +11,7 @@ from numpy import inf, nan, nan_to_num</td>

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<td class="diff-line-num new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

12

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">sys</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">redis</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC14" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"><span class="idiff left right"># import cython</span></span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC14" class="line" lang="python"><span class="kn" style="font-weight: 600;"><span class="idiff left">from</span></span><span class="idiff"> </span><span class="nn" style="color: #555;"><span class="idiff">epimodels.continuous.models</span></span><span class="idiff"> </span><span class="kn" style="font-weight: 600;"><span class="idiff">import</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">SIR</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">SEIR</span></span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC15" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numba</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">numba.typed</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">List</span></span>

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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"></span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,12 +20,14 @@ redisclient = redis.StrictRedis()</td>

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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"><span class="n" style="color: #333;">vnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>

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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python">    <span class="s" style="color: #d14;">'SIR'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python">    <span class="s" style="color: #d14;">'SIR_s'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC23" class="line" lang="python">    <span class="s" style="color: #d14;">'SIR_cont'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python">    <span class="s" style="color: #d14;">'SIS'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python">    <span class="s" style="color: #d14;">'SIS_s'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python">    <span class="s" style="color: #d14;">'SEIS'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python">    <span class="s" style="color: #d14;">'SEIS_s'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python">    <span class="s" style="color: #d14;">'SEIR'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python">    <span class="s" style="color: #d14;">'SEIR_s'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC30" class="line" lang="python">    <span class="s" style="color: #d14;">'SEIR_cont'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python">    <span class="s" style="color: #d14;">'SIpRpS'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python">    <span class="s" style="color: #d14;">'SIpRpS_s'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC33" class="line" lang="python">    <span class="s" style="color: #d14;">'SEIpRpS'</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'Exposed'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Infectious'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Susceptible'</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -125,6 +127,8 @@ def selectModel(modtype):</td>

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<td class="diff-line-num old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

125

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<td class="diff-line-num new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC127" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSIR</span></span>

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<td class="diff-line-num old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC128" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SIR_s'</span><span class="p">:</span></span>

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<td class="diff-line-num old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC129" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSIR_s</span></span>

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<td class="diff-line-num new old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SIR_cont'</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC131" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSIR_cont</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC132" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SIS'</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC133" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSIS</span></span>

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<td class="diff-line-num old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC134" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SIS_s'</span><span class="p">:</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -137,6 +141,8 @@ def selectModel(modtype):</td>

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<td class="diff-line-num old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC141" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSEIR</span></span>

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<td class="diff-line-num old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC142" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SEIR_s'</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC143" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSEIR_s</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC144" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SEIR_cont'</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC145" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSEIR_cont</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC146" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SIpRpS'</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC147" class="line" lang="python">        <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">stepSIpRpS</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC148" class="line" lang="python">    <span class="k" style="font-weight: 600;">elif</span> <span class="n" style="color: #333;">modtype</span> <span class="o" style="font-weight: 600;">==</span> <span class="sa">b</span><span class="s" style="color: #d14;">'SIpRpS_s'</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -188,13 +194,21 @@ def stepFlu(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=N</td>

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194

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<pre style="margin: 0;"> <span id="LC194" class="line" lang="python">              <span class="s" style="color: #d14;">'Susc_age4'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Incub_age4'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Subc_age4'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Sympt_age4'</span><span class="p">,</span> <span class="s" style="color: #d14;">'Comp_age4'</span><span class="p">,)</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

189

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<td class="diff-line-num new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

195

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<pre style="margin: 0;"> <span id="LC195" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">simstep</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">:</span>  <span class="c1" style="color: #998; font-style: italic;"># get initial values</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

196

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<pre style="margin: 0;"> <span id="LC196" class="line" lang="python">        <span class="n" style="color: #333;">S1</span><span class="p">,</span> <span class="n" style="color: #333;">E1</span><span class="p">,</span> <span class="n" style="color: #333;">Is1</span><span class="p">,</span> <span class="n" style="color: #333;">Ic1</span><span class="p">,</span> <span class="n" style="color: #333;">Ig1</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span></span>

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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

191

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<td class="diff-line-num new_line old" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC191" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age1'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age1'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age1'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age1'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age1'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age1'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age1'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age1'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age1'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age1'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

197

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<pre style="margin: 0;">+<span id="LC197" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age1'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age1'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age1'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age1'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

198

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<pre style="margin: 0;">+<span id="LC198" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age1'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age1'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age1'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age1'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

199

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<pre style="margin: 0;">+<span id="LC199" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age1'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age1'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

192

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<td class="diff-line-num new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

200

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<pre style="margin: 0;"> <span id="LC200" class="line" lang="python">        <span class="n" style="color: #333;">S2</span><span class="p">,</span> <span class="n" style="color: #333;">E2</span><span class="p">,</span> <span class="n" style="color: #333;">Is2</span><span class="p">,</span> <span class="n" style="color: #333;">Ic2</span><span class="p">,</span> <span class="n" style="color: #333;">Ig2</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

193

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<td class="diff-line-num new_line old" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC193" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age2'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age2'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age2'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age2'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age2'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age2'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age2'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age2'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age2'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age2'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

201

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<pre style="margin: 0;">+<span id="LC201" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age2'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age2'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age2'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age2'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC202" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age2'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age2'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age2'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age2'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

203

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<pre style="margin: 0;">+<span id="LC203" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age2'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age2'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

194

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<td class="diff-line-num new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

204

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<pre style="margin: 0;"> <span id="LC204" class="line" lang="python">        <span class="n" style="color: #333;">S3</span><span class="p">,</span> <span class="n" style="color: #333;">E3</span><span class="p">,</span> <span class="n" style="color: #333;">Is3</span><span class="p">,</span> <span class="n" style="color: #333;">Ic3</span><span class="p">,</span> <span class="n" style="color: #333;">Ig3</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

195

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<td class="diff-line-num new_line old" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC195" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age3'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age3'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age3'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age3'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age3'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age3'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age3'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age3'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age3'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age3'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

205

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<pre style="margin: 0;">+<span id="LC205" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age3'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age3'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age3'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age3'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

206

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<pre style="margin: 0;">+<span id="LC206" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age3'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age3'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age3'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age3'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

207

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<pre style="margin: 0;">+<span id="LC207" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age3'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age3'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

196

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<td class="diff-line-num new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

208

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<pre style="margin: 0;"> <span id="LC208" class="line" lang="python">        <span class="n" style="color: #333;">S4</span><span class="p">,</span> <span class="n" style="color: #333;">E4</span><span class="p">,</span> <span class="n" style="color: #333;">Is4</span><span class="p">,</span> <span class="n" style="color: #333;">Ic4</span><span class="p">,</span> <span class="n" style="color: #333;">Ig4</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

197

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<td class="diff-line-num new_line old" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC197" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age4'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age4'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age4'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age4'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age4'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age4'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age4'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age4'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age4'</span><span class="p">,</span>  <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age4'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

209

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<pre style="margin: 0;">+<span id="LC209" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'susc_age4'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'susc_age4'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'incub_age4'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'incub_age4'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

210

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<pre style="margin: 0;">+<span id="LC210" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'subc_age4'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'subc_age4'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'sympt_age4'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'sympt_age4'</span><span class="p">)),</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC211" class="line" lang="python">            <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'comp_age4'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'comp_age4'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC212" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span>  <span class="c1" style="color: #998; font-style: italic;"># get values from last time step</span></span>

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<td class="diff-line-num old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC213" class="line" lang="python">        <span class="c1" style="color: #998; font-style: italic;"># print(len(inits))</span></span>

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<td class="diff-line-num new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC214" class="line" lang="python">        <span class="n" style="color: #333;">S1</span><span class="p">,</span> <span class="n" style="color: #333;">E1</span><span class="p">,</span> <span class="n" style="color: #333;">Is1</span><span class="p">,</span> <span class="n" style="color: #333;">Ic1</span><span class="p">,</span> <span class="n" style="color: #333;">Ig1</span><span class="p">,</span> <span class="n" style="color: #333;">S2</span><span class="p">,</span> <span class="n" style="color: #333;">E2</span><span class="p">,</span> <span class="n" style="color: #333;">Is2</span><span class="p">,</span> <span class="n" style="color: #333;">Ic2</span><span class="p">,</span> <span class="n" style="color: #333;">Ig2</span><span class="p">,</span> <span class="n" style="color: #333;">S3</span><span class="p">,</span> <span class="n" style="color: #333;">E3</span><span class="p">,</span> <span class="n" style="color: #333;">Is3</span><span class="p">,</span> <span class="n" style="color: #333;">Ic3</span><span class="p">,</span> <span class="n" style="color: #333;">Ig3</span><span class="p">,</span> <span class="n" style="color: #333;">S4</span><span class="p">,</span> <span class="n" style="color: #333;">E4</span><span class="p">,</span> <span class="n" style="color: #333;">Is4</span><span class="p">,</span> <span class="n" style="color: #333;">Ic4</span><span class="p">,</span> <span class="n" style="color: #333;">Ig4</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">inits</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="378" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -378,6 +392,7 @@ def stepSIR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=N</td>

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<pre style="margin: 0;"> <span id="LC392" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC393" class="line" lang="python">        <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">inits</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="380" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC394" class="line" lang="python">    <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">totpop</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC395" class="line" lang="python">    <span class="n" style="color: #333;">R</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">I</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">S</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC396" class="line" lang="python">    <span class="n" style="color: #333;">beta</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'beta'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'beta'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC397" class="line" lang="python">    <span class="n" style="color: #333;">alpha</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC398" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># e = bp.get('e', bp.get(b'e'));</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -392,7 +407,7 @@ def stepSIR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=N</td>

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<td class="diff-line-num new_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC407" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># Model</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC408" class="line" lang="python">    <span class="n" style="color: #333;">Ipos</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">I</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">Lpos</span></span>

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<pre style="margin: 0;"> <span id="LC409" class="line" lang="python">    <span class="n" style="color: #333;">Spos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">Lpos</span></span>

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<pre style="margin: 0;">-<span id="LC395" class="line" lang="python">    <span class="n" style="color: #333;">Rpos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">R</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">r</span><span class="o" style="font-weight: 600;"><span class="idiff left right">*</span></span><span class="n" style="color: #333;">I</span></span>

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<pre style="margin: 0;">+<span id="LC410" class="line" lang="python">    <span class="n" style="color: #333;">Rpos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">R</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">r</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">I</span></span>

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<pre style="margin: 0;"> <span id="LC411" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC412" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># Migrating infecctious</span></span>

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<pre style="margin: 0;"> <span id="LC413" class="line" lang="python">    <span class="n" style="color: #333;">migInf</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Ipos</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -400,11 +415,6 @@ def stepSIR(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values=N</td>

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<pre style="margin: 0;"> <span id="LC415" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">Ipos</span><span class="p">,</span> <span class="n" style="color: #333;">Spos</span><span class="p">),</span> <span class="n" style="color: #333;">Lpos</span><span class="p">,</span> <span class="n" style="color: #333;">migInf</span></span>

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<pre style="margin: 0;"> <span id="LC416" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC417" class="line" lang="python"></span>

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<pre style="margin: 0;">-<span id="LC403" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># @cython.locals(inits=list, simstep='long', totpop='long', theta='double', npass='double', bi=dict, bp=dict,</span></span>

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<pre style="margin: 0;">-<span id="LC404" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                beta='double', alpha='double', E='double', I='double', S='double', N='long',</span></span>

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<pre style="margin: 0;">-<span id="LC405" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',</span></span>

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<pre style="margin: 0;">-<span id="LC406" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                Ipos='double', Spos='double', Rpos='double')</span></span>

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<pre style="margin: 0;">-<span id="LC407" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># @numba.jit(forceobj=True, cache=True)</span></span>

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<pre style="margin: 0;"> <span id="LC418" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">stepSIR_s</span><span class="p">(</span><span class="n" style="color: #333;">inits</span><span class="p">,</span> <span class="n" style="color: #333;">simstep</span><span class="p">,</span> <span class="n" style="color: #333;">totpop</span><span class="p">,</span> <span class="n" style="color: #333;">theta</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">npass</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">values</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">model</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span></span>

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<pre style="margin: 0;"> <span id="LC419" class="line" lang="python">              <span class="n" style="color: #333;">dist</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'poisson'</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-></span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">:</span></span>

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<pre style="margin: 0;"> <span id="LC420" class="line" lang="python">    <span class="s" style="color: #d14;">"""</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -417,6 +427,7 @@ def stepSIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values</td>

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417

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<td class="diff-line-num new_line" data-linenumber="427" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC427" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

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<td class="diff-line-num old_line" data-linenumber="418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="428" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC428" class="line" lang="python">        <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">inits</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

419

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<td class="diff-line-num new_line" data-linenumber="429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

429

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<pre style="margin: 0;"> <span id="LC429" class="line" lang="python">    <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">totpop</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

430

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<pre style="margin: 0;">+<span id="LC430" class="line" lang="python">    <span class="n" style="color: #333;">R</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">I</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">S</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

420

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<td class="diff-line-num new_line" data-linenumber="431" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

431

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<pre style="margin: 0;"> <span id="LC431" class="line" lang="python">    <span class="n" style="color: #333;">beta</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'beta'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'beta'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="421" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

421

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<td class="diff-line-num new_line" data-linenumber="432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

432

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<pre style="margin: 0;"> <span id="LC432" class="line" lang="python">    <span class="n" style="color: #333;">alpha</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

422

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<td class="diff-line-num new_line" data-linenumber="433" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

433

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<pre style="margin: 0;"> <span id="LC433" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># e = bp.get('e', bp.get(b'e'));</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -437,7 +448,7 @@ def stepSIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values</td>

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437

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<td class="diff-line-num new_line" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

448

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<pre style="margin: 0;"> <span id="LC448" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># Model</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC449" class="line" lang="python">    <span class="n" style="color: #333;">Ipos</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="mi" style="color: #099;">1</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">r</span><span class="p">)</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">I</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">Lpos</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

439

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<td class="diff-line-num new_line" data-linenumber="450" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

450

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<pre style="margin: 0;"> <span id="LC450" class="line" lang="python">    <span class="n" style="color: #333;">Spos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">Lpos</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

440

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<td class="diff-line-num new_line old" data-linenumber="451" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC440" class="line" lang="python">    <span class="n" style="color: #333;">Rpos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">N</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">-</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">Spos</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">Ipos</span></span><span class="p"><span class="idiff right">)</span></span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="451" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

451

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC451" class="line" lang="python">    <span class="n" style="color: #333;">Rpos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">R</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">+</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">r</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">I</span></span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

441

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<td class="diff-line-num new_line" data-linenumber="452" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

452

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<pre style="margin: 0;"> <span id="LC452" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

442

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<td class="diff-line-num new_line" data-linenumber="453" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

453

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<pre style="margin: 0;"> <span id="LC453" class="line" lang="python">    <span class="c1" style="color: #998; font-style: italic;"># Migrating infecctious</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="454" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

454

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<pre style="margin: 0;"> <span id="LC454" class="line" lang="python">    <span class="n" style="color: #333;">migInf</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Ipos</span></span>

</pre>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -445,6 +456,41 @@ def stepSIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, values</td>

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<pre style="margin: 0;"> <span id="LC456" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">Ipos</span><span class="p">,</span> <span class="n" style="color: #333;">Spos</span><span class="p">],</span> <span class="n" style="color: #333;">Lpos</span><span class="p">,</span> <span class="n" style="color: #333;">migInf</span></span>

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<pre style="margin: 0;"> <span id="LC457" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC458" class="line" lang="python"></span>

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<pre style="margin: 0;">+<span id="LC459" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">stepSIR_cont</span><span class="p">(</span><span class="n" style="color: #333;">inits</span><span class="p">,</span> <span class="n" style="color: #333;">simstep</span><span class="p">,</span> <span class="n" style="color: #333;">totpop</span><span class="p">,</span> <span class="n" style="color: #333;">theta</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">npass</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">values</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">model</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-></span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">:</span></span>

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<pre style="margin: 0;">+<span id="LC460" class="line" lang="python">    <span class="s" style="color: #d14;">"""</span></span>

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<pre style="margin: 0;">+<span id="LC461" class="line" lang="python"><span class="s" style="color: #d14;">    ODE SIR without births and deaths</span></span>

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<pre style="margin: 0;">+<span id="LC462" class="line" lang="python"><span class="s" style="color: #d14;">    :param inits:</span></span>

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<pre style="margin: 0;">+<span id="LC463" class="line" lang="python"><span class="s" style="color: #d14;">    :param simstep:</span></span>

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<pre style="margin: 0;">+<span id="LC464" class="line" lang="python"><span class="s" style="color: #d14;">    :param totpop:</span></span>

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<pre style="margin: 0;">+<span id="LC465" class="line" lang="python"><span class="s" style="color: #d14;">    :param theta:</span></span>

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<pre style="margin: 0;">+<span id="LC466" class="line" lang="python"><span class="s" style="color: #d14;">    :param npass:</span></span>

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<pre style="margin: 0;">+<span id="LC467" class="line" lang="python"><span class="s" style="color: #d14;">    :param bi:</span></span>

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<pre style="margin: 0;">+<span id="LC468" class="line" lang="python"><span class="s" style="color: #d14;">    :param bp:</span></span>

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<pre style="margin: 0;">+<span id="LC469" class="line" lang="python"><span class="s" style="color: #d14;">    :param values:</span></span>

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<pre style="margin: 0;">+<span id="LC470" class="line" lang="python"><span class="s" style="color: #d14;">    :param model:</span></span>

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<pre style="margin: 0;">+<span id="LC471" class="line" lang="python"><span class="s" style="color: #d14;">    :return:</span></span>

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<pre style="margin: 0;">+<span id="LC472" class="line" lang="python"><span class="s" style="color: #d14;">    """</span></span>

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<pre style="margin: 0;">+<span id="LC473" class="line" lang="python">    <span class="n" style="color: #333;">sir</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">SIR</span><span class="p">()</span></span>

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<pre style="margin: 0;">+<span id="LC474" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">simstep</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">:</span>  <span class="c1" style="color: #998; font-style: italic;"># get initial values</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC475" class="line" lang="python">        <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'e'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'e'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'i'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'i'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'s'</span><span class="p">)))</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC476" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC477" class="line" lang="python">        <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">inits</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="478" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC478" class="line" lang="python">    <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">totpop</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="479" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC479" class="line" lang="python">    <span class="n" style="color: #333;">R</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">I</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">S</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC480" class="line" lang="python">    <span class="n" style="color: #333;">beta</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'beta'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'beta'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC481" class="line" lang="python">    <span class="n" style="color: #333;">alpha</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC482" class="line" lang="python">    <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'r'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'r'</span><span class="p">));</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC483" class="line" lang="python">    <span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'b'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="484" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC484" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC485" class="line" lang="python">    <span class="n" style="color: #333;">sir</span><span class="p">([</span><span class="n" style="color: #333;">S</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">R</span><span class="p">],</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">N</span><span class="p">,</span> <span class="p">{</span><span class="s" style="color: #d14;">'beta'</span><span class="p">:</span> <span class="n" style="color: #333;">beta</span><span class="p">,</span> <span class="s" style="color: #d14;">'gamma'</span><span class="p">:</span> <span class="n" style="color: #333;">r</span><span class="p">})</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="486" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC486" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="487" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC487" class="line" lang="python">    <span class="n" style="color: #333;">Spos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'S'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="488" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC488" class="line" lang="python">    <span class="n" style="color: #333;">Ipos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'I'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>

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<pre style="margin: 0;">+<span id="LC489" class="line" lang="python">    <span class="n" style="color: #333;">Lpos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'I'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">sir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'I'</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>

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<pre style="margin: 0;">+<span id="LC490" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC491" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">Ipos</span><span class="p">,</span> <span class="n" style="color: #333;">Spos</span><span class="p">],</span> <span class="n" style="color: #333;">Lpos</span><span class="p">,</span> <span class="n" style="color: #333;">Ipos</span></span>

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<pre style="margin: 0;">+<span id="LC492" class="line" lang="python"></span>

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<pre style="margin: 0;">+<span id="LC493" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC494" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># @cython.locals(inits=list, simstep='long', totpop='long', theta='double', npass='double', bi=dict, bp=dict,</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC495" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                beta='double', alpha='double', E='double', I='double', S='double', N='long',</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC496" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',</span></span>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -618,6 +664,42 @@ def stepSEIR_s(inits, simstep, totpop, theta=0, npass=0, bi=None, bp=None, value</td>

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<pre style="margin: 0;"> <span id="LC664" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="p">[</span><span class="n" style="color: #333;">Epos</span><span class="p">,</span> <span class="n" style="color: #333;">Ipos</span><span class="p">,</span> <span class="n" style="color: #333;">Spos</span><span class="p">],</span> <span class="n" style="color: #333;">Lpos</span><span class="p">,</span> <span class="n" style="color: #333;">migInf</span></span>

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<pre style="margin: 0;"> <span id="LC665" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC666" class="line" lang="python"></span>

</pre>

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<pre style="margin: 0;">+<span id="LC667" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">stepSEIR_cont</span><span class="p">(</span><span class="n" style="color: #333;">inits</span><span class="p">,</span> <span class="n" style="color: #333;">simstep</span><span class="p">,</span> <span class="n" style="color: #333;">totpop</span><span class="p">,</span> <span class="n" style="color: #333;">theta</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">npass</span><span class="o" style="font-weight: 600;">=</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">values</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">,</span> <span class="n" style="color: #333;">model</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">)</span> <span class="o" style="font-weight: 600;">-></span> <span class="nb" style="color: #0086b3;">tuple</span><span class="p">:</span></span>

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<pre style="margin: 0;">+<span id="LC668" class="line" lang="python">    <span class="s" style="color: #d14;">"""</span></span>

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<pre style="margin: 0;">+<span id="LC669" class="line" lang="python"><span class="s" style="color: #d14;">    ODE SIR without births and deaths</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC670" class="line" lang="python"><span class="s" style="color: #d14;">    :param inits:</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC671" class="line" lang="python"><span class="s" style="color: #d14;">    :param simstep:</span></span>

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<td class="diff-line-num new new_line" data-linenumber="672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

672

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<pre style="margin: 0;">+<span id="LC672" class="line" lang="python"><span class="s" style="color: #d14;">    :param totpop:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

673

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<pre style="margin: 0;">+<span id="LC673" class="line" lang="python"><span class="s" style="color: #d14;">    :param theta:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="674" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

674

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<pre style="margin: 0;">+<span id="LC674" class="line" lang="python"><span class="s" style="color: #d14;">    :param npass:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="675" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

675

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC675" class="line" lang="python"><span class="s" style="color: #d14;">    :param bi:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="676" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

676

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<pre style="margin: 0;">+<span id="LC676" class="line" lang="python"><span class="s" style="color: #d14;">    :param bp:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="677" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

677

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<pre style="margin: 0;">+<span id="LC677" class="line" lang="python"><span class="s" style="color: #d14;">    :param values:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="678" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

678

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<pre style="margin: 0;">+<span id="LC678" class="line" lang="python"><span class="s" style="color: #d14;">    :param model:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="679" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

679

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<pre style="margin: 0;">+<span id="LC679" class="line" lang="python"><span class="s" style="color: #d14;">    :return:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="680" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

680

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<pre style="margin: 0;">+<span id="LC680" class="line" lang="python"><span class="s" style="color: #d14;">    """</span></span>

</pre>

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681

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<pre style="margin: 0;">+<span id="LC681" class="line" lang="python">    <span class="n" style="color: #333;">seir</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">SEIR</span><span class="p">()</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="682" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

682

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<pre style="margin: 0;">+<span id="LC682" class="line" lang="python">    <span class="k" style="font-weight: 600;">if</span> <span class="n" style="color: #333;">simstep</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span><span class="p">:</span>  <span class="c1" style="color: #998; font-style: italic;"># get initial values</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="683" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

683

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<pre style="margin: 0;">+<span id="LC683" class="line" lang="python">        <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'e'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'e'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'i'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'i'</span><span class="p">)),</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'s'</span><span class="p">,</span> <span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'s'</span><span class="p">)))</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="684" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

684

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<pre style="margin: 0;">+<span id="LC684" class="line" lang="python">    <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="685" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

685

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<pre style="margin: 0;">+<span id="LC685" class="line" lang="python">        <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">S</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">inits</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="686" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

686

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC686" class="line" lang="python">    <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">totpop</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="687" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

687

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC687" class="line" lang="python">    <span class="n" style="color: #333;">R</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">-</span> <span class="p">(</span><span class="n" style="color: #333;">E</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">I</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">S</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="688" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

688

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC688" class="line" lang="python">    <span class="n" style="color: #333;">beta</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'beta'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'beta'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="689" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

689

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<pre style="margin: 0;">+<span id="LC689" class="line" lang="python">    <span class="n" style="color: #333;">alpha</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'alpha'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="690" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

690

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<pre style="margin: 0;">+<span id="LC690" class="line" lang="python">    <span class="n" style="color: #333;">e</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'e'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'e'</span><span class="p">))</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="691" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

691

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<pre style="margin: 0;">+<span id="LC691" class="line" lang="python">    <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'r'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'r'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="692" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

692

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<pre style="margin: 0;">+<span id="LC692" class="line" lang="python">    <span class="n" style="color: #333;">b</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="s" style="color: #d14;">'b'</span><span class="p">,</span> <span class="n" style="color: #333;">bp</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(</span><span class="sa">b</span><span class="s" style="color: #d14;">'b'</span><span class="p">));</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="693" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

693

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC693" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="694" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

694

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<pre style="margin: 0;">+<span id="LC694" class="line" lang="python">    <span class="n" style="color: #333;">seir</span><span class="p">([</span><span class="n" style="color: #333;">S</span><span class="p">,</span> <span class="n" style="color: #333;">E</span><span class="p">,</span> <span class="n" style="color: #333;">I</span><span class="p">,</span> <span class="n" style="color: #333;">R</span><span class="p">],</span> <span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">1</span><span class="p">],</span> <span class="n" style="color: #333;">N</span><span class="p">,</span> <span class="p">{</span><span class="s" style="color: #d14;">'beta'</span><span class="p">:</span> <span class="n" style="color: #333;">beta</span><span class="p">,</span> <span class="s" style="color: #d14;">'gamma'</span><span class="p">:</span> <span class="n" style="color: #333;">r</span><span class="p">,</span> <span class="s" style="color: #d14;">'epsilon'</span><span class="p">:</span> <span class="n" style="color: #333;">e</span><span class="p">})</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="695" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

695

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC695" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="696" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

696

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC696" class="line" lang="python">    <span class="n" style="color: #333;">Spos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">seir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'S'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

697

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<pre style="margin: 0;">+<span id="LC697" class="line" lang="python">    <span class="n" style="color: #333;">Epos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">seir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'E'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="698" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

698

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<pre style="margin: 0;">+<span id="LC698" class="line" lang="python">    <span class="n" style="color: #333;">Ipos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">seir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'I'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="699" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

699

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC699" class="line" lang="python">    <span class="n" style="color: #333;">Lpos</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">seir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'I'</span><span class="p">][</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">seir</span><span class="p">.</span><span class="n" style="color: #333;">traces</span><span class="p">[</span><span class="s" style="color: #d14;">'I'</span><span class="p">][</span><span class="mi" style="color: #099;">0</span><span class="p">]</span></span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="700" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

700

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC700" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="701" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

701

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC701" class="line" lang="python">    <span class="k" style="font-weight: 600;">return</span> <span class="p">[</span><span class="n" style="color: #333;">Epos</span><span class="p">,</span> <span class="n" style="color: #333;">Ipos</span><span class="p">,</span> <span class="n" style="color: #333;">Spos</span><span class="p">],</span> <span class="n" style="color: #333;">Lpos</span><span class="p">,</span> <span class="n" style="color: #333;">Ipos</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="702" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

702

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC702" class="line" lang="python"></span>

</pre>

</td>

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<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="621" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

621

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<td class="diff-line-num new_line" data-linenumber="703" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

703

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC703" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># @cython.locals(inits=list, simstep='long', totpop='long', theta='double', npass='double', bi=dict, bp=dict,</span></span>

</pre>

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622

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704

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<pre style="margin: 0;"> <span id="LC704" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                beta='double', alpha='double', E='double', I='double', S='double', N='long',</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="623" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

623

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<td class="diff-line-num new_line" data-linenumber="705" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

705

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<pre style="margin: 0;"> <span id="LC705" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;">#                r='double', b='double', w='double', Lpos='double', Lpos_esp='double', R='double',</span></span>

</pre>

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<br>

</li>

<li id="bb994b2c595b8a77db68c997e46a6474993db97e">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#bb994b2c595b8a77db68c997e46a6474993db97e"><strong>Epigrass/simobj.py</strong></a>

<hr>

<table class="code white" style="font-family: monospace; font-size: 90%;" bgcolor="#fff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +16,7 @@ from networkx.readwrite import json_graph</td>

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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

16

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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

16

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<pre style="margin: 0;"> <span id="LC16" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">redis</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

17

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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

17

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<pre style="margin: 0;"> <span id="LC17" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

18

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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

18

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<pre style="margin: 0;"> <span id="LC18" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">Epigrass.data_io</span> <span class="kn" style="font-weight: 600;">import</span> <span class="o" style="font-weight: 600;">*</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

19

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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC19" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">Epigrass</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;"><span class="idiff left right">epi</span>models</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

19

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">Epigrass</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">models</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

20

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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

20

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<pre style="margin: 0;"> <span id="LC20" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

21

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<td class="diff-line-num new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

21

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<pre style="margin: 0;"> <span id="LC21" class="line" lang="python"><span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

22

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<td class="diff-line-num new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

22

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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python">    <span class="n" style="color: #333;">sys</span><span class="p">.</span><span class="n" style="color: #333;">path</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="n" style="color: #333;">os</span><span class="p">.</span><span class="n" style="color: #333;">getcwd</span><span class="p">())</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -126,8 +126,8 @@ class siteobj:</td>

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<td class="diff-line-num old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

126

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<td class="diff-line-num new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

126

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<pre style="margin: 0;"> <span id="LC126" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">model</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CustomModel</span><span class="p">.</span><span class="n" style="color: #333;">Model</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

127

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<pre style="margin: 0;"> <span id="LC127" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">vnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">CustomModel</span><span class="p">.</span><span class="n" style="color: #333;">vnames</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC128" class="line" lang="python">        <span class="k" style="font-weight: 600;">else</span><span class="p">:</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC129" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">model</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">epi</span>models</span><span class="p">.</span><span class="n" style="color: #333;">Epimodel</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">geocode</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">modtype</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<td class="diff-line-num new_line old" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC130" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">vnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left right">epi</span>models</span><span class="p">.</span><span class="n" style="color: #333;">vnames</span><span class="p">[</span><span class="n" style="color: #333;">modtype</span><span class="p">]</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC129" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">model</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">models</span><span class="p">.</span><span class="n" style="color: #333;">Epimodel</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">geocode</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">modtype</span><span class="p">)</span></span>

</pre>

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<pre style="margin: 0;">+<span id="LC130" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">vnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">models</span><span class="p">.</span><span class="n" style="color: #333;">vnames</span><span class="p">[</span><span class="n" style="color: #333;">modtype</span><span class="p">]</span></span>

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<pre style="margin: 0;"> <span id="LC131" class="line" lang="python">        <span class="k" style="font-weight: 600;">try</span><span class="p">:</span></span>

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<td class="diff-line-num old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC132" class="line" lang="python">            <span class="c1" style="color: #998; font-style: italic;"># self.ts = [[bi[vn.lower()] for vn in self.vnames]]</span></span>

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<pre style="margin: 0;"> <span id="LC133" class="line" lang="python">            <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">ts</span><span class="p">.</span><span class="n" style="color: #333;">append</span><span class="p">(</span><span class="nb" style="color: #0086b3;">list</span><span class="p">(</span><span class="n" style="color: #333;">bi</span><span class="p">.</span><span class="n" style="color: #333;">values</span><span class="p">()))</span>  <span class="c1" style="color: #998; font-style: italic;"># This is fine since bi is an OrderedDict</span></span>

</pre>

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<br>

</li>

<li id="bf1ab255d6dd6186839c380b8995503c3a467e70">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#bf1ab255d6dd6186839c380b8995503c3a467e70"><strong>demos/rio.epg</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,9 +33,9 @@ encoding =</td>

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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext">#==============================================================#</span>

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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">[EPIDEMIOLOGICAL MODEL]</span>

</pre>

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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">#==============================================================#</span>

</pre>

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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext">#model types available: SIS, SIS_s ,SIR, SIR_s, S<span class="idiff left right">EIS, SEIS_s, SEIR</span>, SEIR_s,</span>

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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">#model types available: SIS, SIS_s ,SIR, SIR_s, S<span class="idiff left right">IR_cont, SEIS, SEIS_s, SEIR, SEIR_cont</span>, SEIR_s,</span>

</pre>

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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"># SIpRpS, SIpRpS_s,SIpR,SIpR_s,Influenza or Custom (see documentation for description).</span>

</pre>

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<td class="diff-line-num new_line old" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext">modtype = SEIR</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">modtype = SEIR<span class="idiff left right">_cont</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext">#==============================================================#</span>

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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext">[MODEL PARAMETERS]</span>

</pre>

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</li>

<li id="001c9365848443a72bfad63a2e687282da6b1cfb">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#001c9365848443a72bfad63a2e687282da6b1cfb"><strong>demos/spread.gml</strong></a>

The diff for this file was not included because it is too large.

<br>

</li>

<li id="58cf98b512fb33647e83c4e86591ca84a5cade11">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#58cf98b512fb33647e83c4e86591ca84a5cade11"><strong>demos/spread.graphml</strong></a>

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<br>

</li>

<li id="11f45ba9e6ffc98d0848fab1b5f3c511173a8eff">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#11f45ba9e6ffc98d0848fab1b5f3c511173a8eff"><strong>demos/spread.json</strong></a>

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<br>

</li>

<li id="9107dcd6c0cef27fbbcfe1615d654a691cd5df9a">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#9107dcd6c0cef27fbbcfe1615d654a691cd5df9a"><strong>docs/source/using.rst</strong></a>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -436,11 +436,11 @@ The Web Dashboard</td>

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<pre style="margin: 0;"> <span id="LC436" class="line" lang="plaintext"></span>

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<pre style="margin: 0;"> <span id="LC437" class="line" lang="plaintext">To interact and explore the simulations stored in the database, Epigrass offers an interactive dashboard. It allows you to</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

438

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<td class="diff-line-num new_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

438

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<pre style="margin: 0;"> <span id="LC438" class="line" lang="plaintext">navigate to any simulation previously done for a given model, and inspect it interactively.</span>

</pre>

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439

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<td class="diff-line-num new_line old" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC439" class="line" lang="plaintext">You can ask for it to open <span class="idiff left right">right after a simulation is done</span>::</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

439

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC439" class="line" lang="plaintext">You can ask for it to open <span class="idiff left right">**right after a simulation is done**</span>::</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

440

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<td class="diff-line-num new_line" data-linenumber="440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

440

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<pre style="margin: 0;"> <span id="LC440" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

441

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<td class="diff-line-num new_line" data-linenumber="441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

441

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<pre style="margin: 0;"> <span id="LC441" class="line" lang="plaintext">  $ epirunner -D mymodel.epg</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

442

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<td class="diff-line-num new_line" data-linenumber="442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

442

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<pre style="margin: 0;"> <span id="LC442" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

443

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<td class="diff-line-num new_line old" data-linenumber="443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC443" class="line" lang="plaintext">or you can <span class="idiff left right">open it for a</span> given model by typing from the directory where the *epg* file is located::</span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="444" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

443

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<pre style="margin: 0;">+<span id="LC443" class="line" lang="plaintext">or you can <span class="idiff left right">simplu open it to inspect previous simulations of</span> given model by typing from the directory where the *epg* file is located::</span>

</pre>

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444

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<td class="diff-line-num new_line" data-linenumber="444" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

444

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<pre style="margin: 0;"> <span id="LC444" class="line" lang="plaintext"></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

445

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<td class="diff-line-num new_line" data-linenumber="445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

445

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<pre style="margin: 0;"> <span id="LC445" class="line" lang="plaintext">  $ epirunner -V mymodel.epg</span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

446

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<td class="diff-line-num new_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

446

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<pre style="margin: 0;"> <span id="LC446" class="line" lang="plaintext"></span>

</pre>

</td>

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</table>

<br>

</li>

<li id="19359a61ae2446b51b549167b014da2fcf265768">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#19359a61ae2446b51b549167b014da2fcf265768"><strong>requirements.txt</strong></a>

<hr>

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<td class="diff-line-num old_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<td class="diff-line-num new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

1

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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/pandas" rel="nofollow noreferrer noopener" target="_blank">pandas</a></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2

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<td class="diff-line-num new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

2

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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/geopandas" rel="nofollow noreferrer noopener" target="_blank">geopandas</a></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<td class="diff-line-num new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

3

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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/numpy" rel="nofollow noreferrer noopener" target="_blank">numpy</a></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

4

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<td class="diff-line-num new_line old" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/dash" rel="nofollow noreferrer noopener" target="_blank">dash</a></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

4

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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/matplotlib" rel="nofollow noreferrer noopener" target="_blank">matplotlib</a></span>

</pre>

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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

6

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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/dash_html_components" rel="nofollow noreferrer noopener" target="_blank">dash_html_components</a></span>

</pre>

</td>

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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

7

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<td class="diff-line-num new_line old" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/dash_core_components" rel="nofollow noreferrer noopener" target="_blank">dash_core_components</a></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

8

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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

5

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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/networkx" rel="nofollow noreferrer noopener" target="_blank">networkx</a></span>

</pre>

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9

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<td class="diff-line-num new_line old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">

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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/plotly" rel="nofollow noreferrer noopener" target="_blank">plotly</a></span>

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<td class="diff-line-num new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/SQLAlchemy" rel="nofollow noreferrer noopener" target="_blank">SQLAlchemy</a></span>

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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

7

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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/SQLObject" rel="nofollow noreferrer noopener" target="_blank">SQLObject</a></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/tqdm" rel="nofollow noreferrer noopener" target="_blank">tqdm</a></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -17,4 +13,10 @@ pymysql</td>

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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/fiona" rel="nofollow noreferrer noopener" target="_blank">fiona</a></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/shapely" rel="nofollow noreferrer noopener" target="_blank">shapely</a></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/altair" rel="nofollow noreferrer noopener" target="_blank">altair</a></span>

</pre>

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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/redis" rel="nofollow noreferrer noopener" target="_blank">redis</a></span></pre>

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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>

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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/redis" rel="nofollow noreferrer noopener" target="_blank">redis</a></span>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/epimodels" rel="nofollow noreferrer noopener" target="_blank">epimodels</a></span>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/panel" rel="nofollow noreferrer noopener" target="_blank">panel</a></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/holoviews" rel="nofollow noreferrer noopener" target="_blank">holoviews</a></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/geoviews" rel="nofollow noreferrer noopener" target="_blank">geoviews</a></span>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/scikit-image" rel="nofollow noreferrer noopener" target="_blank">scikit-image</a></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"><a href="https://pypi.python.org/pypi/datashader" rel="nofollow noreferrer noopener" target="_blank">datashader</a></span></pre>

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<br>

</li>

<li id="8e2edce0d507e1297474f25c00cae94258db38d8">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>

<hr>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,10 +22,9 @@ setup(name='epigrass',</td>

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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC22" class="line" lang="python">      <span class="n" style="color: #333;">entry_points</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span></span>

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<pre style="margin: 0;"> <span id="LC23" class="line" lang="python">          <span class="s" style="color: #d14;">'console_scripts'</span><span class="p">:</span> <span class="p">[</span></span>

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<pre style="margin: 0;"> <span id="LC24" class="line" lang="python">              <span class="s" style="color: #d14;">'epirunner = Epigrass.manager:main'</span><span class="p">,</span></span>

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<pre style="margin: 0;">-<span id="LC25" class="line" lang="python">              <span class="s" style="color: #d14;">'epidash = Epigrass.epidash:main'</span></span>

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<pre style="margin: 0;"> <span id="LC25" class="line" lang="python">          <span class="p">],</span></span>

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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python">      <span class="p">},</span></span>

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<pre style="margin: 0;">-<span id="LC28" class="line" lang="python">      <span class="c1" style="color: #998; font-style: italic;"># ext_modules=cythonize('Epigrass/<span class="idiff left right">epi</span>models.py'),</span></span>

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<pre style="margin: 0;">+<span id="LC27" class="line" lang="python">      <span class="c1" style="color: #998; font-style: italic;"># ext_modules=cythonize('Epigrass/models.py'),</span></span>

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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python">      <span class="n" style="color: #333;">zip_safe</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">False</span><span class="p">,</span></span>

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<pre style="margin: 0;"> <span id="LC29" class="line" lang="python">      <span class="n" style="color: #333;">include_package_data</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">,</span></span>

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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python">      <span class="n" style="color: #333;">package_data</span><span class="o" style="font-weight: 600;">=</span><span class="p">{</span><span class="s" style="color: #d14;">''</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">'COPYING'</span><span class="p">,</span> <span class="s" style="color: #d14;">'epigrass.desktop'</span><span class="p">,</span> <span class="s" style="color: #d14;">'*.rst'</span><span class="p">,</span> <span class="s" style="color: #d14;">'*.tex'</span><span class="p">,</span> <span class="s" style="color: #d14;">'*.png'</span><span class="p">,</span> <span class="s" style="color: #d14;">'*.jpg'</span><span class="p">]},</span></span>

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</li>

<li id="044905dfea3f67630cadcc66b454752c6685fc88">

<a href="https://salsa.debian.org/med-team/epigrass/-/commit/8d3694db7c2de1dfc2d04e5db69397e8488039f0#044905dfea3f67630cadcc66b454752c6685fc88"><strong>tests/test_models.py</strong></a>

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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,7 +8,7 @@ import unittest</td>

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<pre style="margin: 0;"> <span id="LC8" class="line" lang="python"><span class="kn" style="font-weight: 600;">import</span> <span class="nn" style="color: #555;">numpy</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">np</span></span>

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<pre style="margin: 0;"> <span id="LC9" class="line" lang="python"><span class="c1" style="color: #998; font-style: italic;"># from Epigrass.manager import *</span></span>

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<pre style="margin: 0;"> <span id="LC10" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">Epigrass.simobj</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">siteobj</span><span class="p">,</span> <span class="n" style="color: #333;">graph</span><span class="p">,</span> <span class="n" style="color: #333;">edge</span></span>

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<pre style="margin: 0;">-<span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">Epigrass.<span class="idiff left right">epi</span>models</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Epimodel</span></span>

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<pre style="margin: 0;">+<span id="LC11" class="line" lang="python"><span class="kn" style="font-weight: 600;">from</span> <span class="nn" style="color: #555;">Epigrass.models</span> <span class="kn" style="font-weight: 600;">import</span> <span class="n" style="color: #333;">Epimodel</span></span>

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<pre style="margin: 0;"> <span id="LC12" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC13" class="line" lang="python"></span>

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<pre style="margin: 0;"> <span id="LC14" class="line" lang="python"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">TestModels</span><span class="p">(</span><span class="n" style="color: #333;">unittest</span><span class="p">.</span><span class="n" style="color: #333;">TestCase</span><span class="p">):</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -355,6 +355,16 @@ class test_model_run(unittest.TestCase):</td>

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<pre style="margin: 0;"> <span id="LC355" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">title</span><span class="p">(</span><span class="s" style="color: #d14;">'$SEIR$'</span><span class="p">)</span></span>

</pre>

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356

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<td class="diff-line-num new_line" data-linenumber="356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC356" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">legend</span><span class="p">([</span><span class="s" style="color: #d14;">'E'</span><span class="p">,</span> <span class="s" style="color: #d14;">'I'</span><span class="p">,</span> <span class="s" style="color: #d14;">'S'</span><span class="p">])</span></span>

</pre>

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357

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<td class="diff-line-num new_line" data-linenumber="357" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC357" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC358" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_run_SEIR_cont</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC359" class="line" lang="python">        <span class="n" style="color: #333;">model</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Epimodel</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">modtype</span><span class="o" style="font-weight: 600;">=</span><span class="sa">b</span><span class="s" style="color: #d14;">'SEIR_cont'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="360" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC360" class="line" lang="python">        <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">model</span><span class="p">,</span> <span class="p">[(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">990</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10000</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>

</pre>

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361

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<pre style="margin: 0;">+<span id="LC361" class="line" lang="python">                          <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">bi</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="362" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC362" class="line" lang="python">                          <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">bp</span><span class="p">],</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="363" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC363" class="line" lang="python">                  <span class="mi" style="color: #099;">100</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="364" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC364" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">plot</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

365

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<pre style="margin: 0;">+<span id="LC365" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">title</span><span class="p">(</span><span class="s" style="color: #d14;">'$SEIR_{cont}$'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num new old_line" data-linenumber="358" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<td class="diff-line-num new new_line" data-linenumber="366" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC366" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">legend</span><span class="p">([</span><span class="s" style="color: #d14;">'E'</span><span class="p">,</span> <span class="s" style="color: #d14;">'I'</span><span class="p">,</span> <span class="s" style="color: #d14;">'S'</span><span class="p">])</span></span>

</pre>

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<td class="diff-line-num new new_line" data-linenumber="367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

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<pre style="margin: 0;">+<span id="LC367" class="line" lang="python"></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="368" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC368" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_run_SEIS_s</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

</pre>

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<pre style="margin: 0;"> <span id="LC369" class="line" lang="python">        <span class="n" style="color: #333;">model</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Epimodel</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">modtype</span><span class="o" style="font-weight: 600;">=</span><span class="sa">b</span><span class="s" style="color: #d14;">'SEIS_s'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num new_line" data-linenumber="370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

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<pre style="margin: 0;"> <span id="LC370" class="line" lang="python">        <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">model</span><span class="p">,</span> <span class="p">[(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">990</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10000</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>

</pre>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="405" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>

<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -395,6 +405,16 @@ class test_model_run(unittest.TestCase):</td>

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<pre style="margin: 0;"> <span id="LC405" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">title</span><span class="p">(</span><span class="s" style="color: #d14;">'$SIR$'</span><span class="p">)</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

396

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<td class="diff-line-num new_line" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

406

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC406" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">legend</span><span class="p">([</span><span class="s" style="color: #d14;">'E'</span><span class="p">,</span> <span class="s" style="color: #d14;">'I'</span><span class="p">,</span> <span class="s" style="color: #d14;">'S'</span><span class="p">])</span></span>

</pre>

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<td class="diff-line-num old_line" data-linenumber="397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

397

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<td class="diff-line-num new_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

407

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC407" class="line" lang="python"></span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

408

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC408" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_run_SIR_cont</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

</pre>

</td>

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<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

409

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC409" class="line" lang="python">        <span class="n" style="color: #333;">model</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Epimodel</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">modtype</span><span class="o" style="font-weight: 600;">=</span><span class="sa">b</span><span class="s" style="color: #d14;">'SIR_cont'</span><span class="p">)</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

410

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC410" class="line" lang="python">        <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">model</span><span class="p">,</span> <span class="p">[(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">990</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10000</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

411

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC411" class="line" lang="python">                          <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">bi</span><span class="p">,</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

412

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC412" class="line" lang="python">                          <span class="bp" style="color: #999;">self</span><span class="p">.</span><span class="n" style="color: #333;">bp</span><span class="p">],</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

413

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC413" class="line" lang="python">                  <span class="mi" style="color: #099;">100</span><span class="p">)</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

414

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC414" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">plot</span><span class="p">(</span><span class="n" style="color: #333;">res</span><span class="p">)</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

415

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC415" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">title</span><span class="p">(</span><span class="s" style="color: #d14;">'$SIR_{cont}$'</span><span class="p">)</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

416

</td>

<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC416" class="line" lang="python">        <span class="n" style="color: #333;">P</span><span class="p">.</span><span class="n" style="color: #333;">legend</span><span class="p">([</span><span class="s" style="color: #d14;">'E'</span><span class="p">,</span> <span class="s" style="color: #d14;">'I'</span><span class="p">,</span> <span class="s" style="color: #d14;">'S'</span><span class="p">])</span></span>

</pre>

</td>

</tr>

<tr class="line_holder new" id="" style="line-height: 1.6;">

<td class="diff-line-num new old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

</td>

<td class="diff-line-num new new_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">

417

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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">

<pre style="margin: 0;">+<span id="LC417" class="line" lang="python"></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

398

</td>

<td class="diff-line-num new_line" data-linenumber="418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

418

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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC418" class="line" lang="python">    <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">test_run_SIS_s</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">):</span></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

399

</td>

<td class="diff-line-num new_line" data-linenumber="419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

419

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC419" class="line" lang="python">        <span class="n" style="color: #333;">model</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">Epimodel</span><span class="p">(</span><span class="mi" style="color: #099;">1</span><span class="p">,</span> <span class="n" style="color: #333;">modtype</span><span class="o" style="font-weight: 600;">=</span><span class="sa">b</span><span class="s" style="color: #d14;">'SIS_s'</span><span class="p">)</span></span>

</pre>

</td>

</tr>

<tr class="line_holder" id="" style="line-height: 1.6;">

<td class="diff-line-num old_line" data-linenumber="400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

400

</td>

<td class="diff-line-num new_line" data-linenumber="420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">

420

</td>

<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">

<pre style="margin: 0;"> <span id="LC420" class="line" lang="python">        <span class="n" style="color: #333;">res</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">run</span><span class="p">(</span><span class="n" style="color: #333;">model</span><span class="p">,</span> <span class="p">[(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10</span><span class="p">,</span> <span class="mi" style="color: #099;">990</span><span class="p">),</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">10000</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span></span>

</pre>

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