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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/d4be209a7b5539ea26579d39d658d19fb05c23a6">d4be209a</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-19T17:15:15+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.28+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/6884fa66cf5d542d45a116543c13c6757e02b6ef">6884fa66</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-25T17:40:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.29+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/98325d1039c97d3765633f4c8255f50e4e3d942f">98325d10</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-25T17:40:09+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/f742f3ae0723d5ea1da864367733fd18d13640c3">f742f3ae</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-25T17:40:17+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.29+dfsg'
Update to upstream version '2.5.29+dfsg'
with Debian dir ed45dae58dc3352199e76200801ae56d88d60ea8</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/5b1289ed9313fff8442ee7f76e16c5dfa1ebb80a">5b1289ed</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-25T17:42:24+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Removed spelling patch, it was merged upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/-/commit/b44c5529f2396f9c1bf9b02b31eb0f4da1622461">b44c5529</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2021-02-25T17:43:11+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
<span class="deleted-file">
−
debian/patches/spelling
</span>
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<li class="file-stats">
<a href="#595b42362bc80e51259da598ac8ff2dd32cd7358">
res/TemplateBatchFiles/GARD.bf
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<li class="file-stats">
<a href="#e9da9a3aa17695c8e989fcc674d35432c64038e0">
res/TemplateBatchFiles/PairwiseRelativeRatio.bf
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<li class="file-stats">
<a href="#cf5243a3058ebeab74574f8cd2c771cd63a43208">
res/TemplateBatchFiles/SelectionAnalyses/RELAX.bf
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<li class="file-stats">
<a href="#c079be28c5231888d711d5c41d1be180223dfce6">
res/TemplateBatchFiles/SelectionAnalyses/modules/shared-load-file.bf
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<li class="file-stats">
<a href="#0843f8cd833e50a0ae1b16d6b9265232dd51e8b5">
res/TemplateBatchFiles/TemplateModels/GY94.ibf
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<li class="file-stats">
<a href="#a4592f091dc497086884a23526cefa41e6c904e3">
res/TemplateBatchFiles/TemplateModels/GY94.mdl
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<li class="file-stats">
<a href="#5162429bd3f362a69890c6b040d4be37e11a6308">
res/TemplateBatchFiles/files.lst
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<li class="file-stats">
<a href="#c50a9ebb34fca832759d3d11698588f8851c99cb">
res/TemplateBatchFiles/libv3/UtilityFunctions.bf
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<li class="file-stats">
<a href="#04266769a57e3da898ac30696629599a2dbf70a6">
res/TemplateBatchFiles/libv3/convenience/regexp.bf
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<li class="file-stats">
<a href="#e7b72a8f9f424fe1e9e9e76f25522816189c14c9">
res/TemplateBatchFiles/libv3/tasks/alignments.bf
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<a href="#3945e6db8feb0e4ed58719b69ff3d8485bc45e87">
res/TemplateBatchFiles/libv3/tasks/trees.bf
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<li class="file-stats">
<a href="#da9fe1b8aa482a95d2c6145ff61db7930bcd0fe8">
res/TemplateBatchFiles/readIndexFile.bf
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<li class="file-stats">
<a href="#9a5ae795d85e4d5f1568726c609e2499546cd590">
src/core/associative_list.cpp
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</li>
<li class="file-stats">
<a href="#02cbcb76e8ce1aa3e72d55e6696cda20813d57b6">
src/core/batchlan.cpp
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</li>
<li class="file-stats">
<a href="#984635b15ce26c0824ba85946c002feb3137c030">
src/core/batchlan2.cpp
</a>
</li>
<li class="file-stats">
<a href="#cbedcf5fec686e5f563504b995c5d7d07fd8c6b2">
src/core/batchlanruntime.cpp
</a>
</li>
<li class="file-stats">
<a href="#8f267f0287b6f2dfc1594ce4cfeb588fe8a2578c">
src/core/category.cpp
</a>
</li>
<li class="file-stats">
<a href="#10496a7488dc0332386e6f734ef450e847cb8aac">
src/core/constant.cpp
</a>
</li>
<li class="file-stats">
<a href="#d09b45303442d6299978fa8d0c8f3338d6a17886">
src/core/formula.cpp
</a>
</li>
<li class="file-stats">
<a href="#7f26a8678910b09a3bbef4b727e70c3ca29c2bd5">
src/core/global_object_lists.cpp
</a>
</li>
<li class="file-stats">
<a href="#07aceb8d215a75908cea626d9c80bc2a7c06639c">
src/core/global_things.cpp
</a>
</li>
<li class="file-stats">
<a href="#46380d67c22541ee76ad7fa2f39c30110df90a7c">
src/core/include/batchlan.h
</a>
</li>
<li class="file-stats">
<a href="#40fc4f1e42852e6f2302e213cd9b3646abe98291">
src/core/include/formula.h
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</li>
<li class="file-stats">
<a href="#2a277e4b849d74ac4178f402409133631301633d">
src/core/include/global_object_lists.h
</a>
</li>
<li class="file-stats">
<a href="#1f90bcae5572a43ed503911ecef65a7c99ec3d55">
src/core/include/variable.h
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</li>
<li class="file-stats">
<a href="#2a8dd324ded753b0b3c559ac3950a2881ccd7a93">
src/core/likefunc.cpp
</a>
</li>
<li class="file-stats">
<a href="#795bd9642f0c76f4bba4eaba7f491566cf16e788">
src/core/operation.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<a href="https://salsa.debian.org/med-team/hyphy/-/compare/9e1fadefc4b130ecff00222b42b7a10d02dafea7...b44c5529f2396f9c1bf9b02b31eb0f4da1622461">View it on GitLab</a>.
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