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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/multiqc">Debian Med / multiqc</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/multiqc/-/commit/d6e2adf17bb1964d37804520f8eadf9359bd41fb">d6e2adf1</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-02-26T15:51:29+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Real non-trivial autopkgtest
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<strong><a href="https://salsa.debian.org/med-team/multiqc/-/commit/6f5825e703291c7ad9fc9d729700ea24052b5312">6f5825e7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-02-26T15:51:52+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix link glyphicons-halflings-regular.svg
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<strong><a href="https://salsa.debian.org/med-team/multiqc/-/commit/63e4620296334c635724b147f3a4213fdb8471fe">63e46202</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-02-26T15:52:14+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.5.1
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<strong><a href="https://salsa.debian.org/med-team/multiqc/-/commit/6e019cd4f889afdaf5b7b047d639303f163faeaf">6e019cd4</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-02-26T15:58:06+01:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depends: python3-distutils
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#e8d4e78fb9cf19bb02b8edb032aa2fc269fc426b">
debian/multiqc.links
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/multiqc/-/compare/59fbe92243b9a02685ef1b36a269f7012f76b280...6e019cd4f889afdaf5b7b047d639303f163faeaf#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">multiqc (1.9+dfsg-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> [ Tassia Camoes Araujo ]</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Autopkgtest</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Add data for autopkgtest</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Add Recommends: pandoc and texlive-xetex (see debian/tests/README.tests)</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> TODO: Complete test by data in multi-tarball source package</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Fix link glyphicons-halflings-regular.svg</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> * Depends: python3-distutils</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- <span class="idiff left right">Andreas Tille <tille</span>@debian.org> Wed, 24 Feb 2021 10:39:05 +0100</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> -- <span class="idiff left right">Tassia Camoes Araujo <tassia</span>@debian.org> Wed, 24 Feb 2021 10:39:05 +0100</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">multiqc (1.9+dfsg-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/multiqc/-/compare/59fbe92243b9a02685ef1b36a269f7012f76b280...6e019cd4f889afdaf5b7b047d639303f163faeaf#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,7 +20,7 @@ Build-Depends: debhelper-compat (= 12),</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> python3-spectra,</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> python3-coloredlogs <!nocheck>,</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3-humanfriendly (>= 8.1-2) <!nocheck></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/multiqc</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/multiqc.git</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">Homepage: https://multiqc.info/</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +31,7 @@ Architecture: all</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Depends: ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> python3-click,</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> python3-distutils,</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> python3-lzstring,</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> python3-jinja2,</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> python3-matplotlib,</span>
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<li id="e8d4e78fb9cf19bb02b8edb032aa2fc269fc426b">
<a href="https://salsa.debian.org/med-team/multiqc/-/compare/59fbe92243b9a02685ef1b36a269f7012f76b280...6e019cd4f889afdaf5b7b047d639303f163faeaf#e8d4e78fb9cf19bb02b8edb032aa2fc269fc426b"><strong>debian/multiqc.links</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext"># Fonts from the fonts-glyphicons-halflings package</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">usr/share/fonts-glyphicons/glyphicons-halflings-regular.eot usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.eot</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">usr/share/fonts-glyphicons/glyphicons-halflings-regular.svg usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.svg</span>
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3
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">usr/share/fonts-glyphicons/glyphicons-halflings-regular.ttf usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.ttf</span>
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4
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">usr/share/fonts-glyphicons/glyphicons-halflings-regular.woff usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff</span>
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5
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">usr/share/fonts-glyphicons/glyphicons-halflings-regular.woff2 usr/lib/python3/dist-packages/multiqc/templates/default/assets/fonts/glyphicons-halflings-regular.woff2</span>
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<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/multiqc/-/compare/59fbe92243b9a02685ef1b36a269f7012f76b280...6e019cd4f889afdaf5b7b047d639303f163faeaf#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,22 +11,15 @@ if [ "$AUTOPKGTEST_TMP" = "" ] ; then</td>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># TODO: https://med-team.pages.debian.net/policy/#embedding-large-test-data</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Example logs to generate a report can be downloaded from the project website:</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># https://multiqc.info/examples/rna-seq/data.zip</span></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"></span>
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19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Following the procedure to embed test data, the following should do the job:</span></span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"></span>
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21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#cp -a ${CUR_DIR}/debian-tests-data/* $AUTOPKGTEST_TMP</span></span>
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22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#cd $AUTOPKGTEST_TMP</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#unzip *.zip</span></span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">## Generate report from example logs</span></span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#multiqc -f data/</span></span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#if [ -f multiqc_report.html ] ; then</span></span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># echo -e "\nPASS\n"</span></span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#fi</span></span></pre>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"FIXME: The test data should be delivered in a separate binary package once freeze is over"</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> <span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">CUR_DIR</span><span class="k" style="font-weight: 600;">}</span>/debian-tests-data <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span>/data</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$AUTOPKGTEST_TMP</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Generate report from example logs</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell">multiqc <span class="nt" style="color: #000080;">-f</span> data/</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="nt" style="color: #000080;">-f</span> multiqc_report.html <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="nt" style="color: #000080;">-e</span> <span class="s2" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">PASS</span><span class="se" style="color: #d14;">\n</span><span class="s2" style="color: #d14;">"</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span></pre>
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