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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c236e7d5a66c8375d5741641edd51f6cf2782175">c236e7d5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-03T13:42:25+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
</li>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/c236e7d5a66c8375d5741641edd51f6cf2782175#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 03 Mar 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 03 Mar 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">9</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 186 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 96 | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> orthanc-wsi | 49 | {imaging,covid-19,laboratory,his,oncology,practice} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> gdcm | 46 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> amide | 40 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> dicom3tools | 38 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 31 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> dcm2niix | 24 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 183 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 95 | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> gdcm | 49 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 47 | {imaging,covid-19,laboratory,his,oncology,practice} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> amide | 38 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> dicom3tools | 37 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 29 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> htsjdk | 24 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> nifticlib | 24 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 23 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> nifticlib | 23 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dicomnifti | 22 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> minc-tools | 21 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> gdcm | 20 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> odin | 20 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> plastimatch | 17 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> invesalius | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> minc-tools | 20 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> gdcm | 19 | {covid-19,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> odin | 19 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> plastimatch | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> vtk-dicom | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> gnumed-server | 15 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> <span class="idiff left">mia </span> | 1<span class="idiff right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <span class="idiff left">invesalius</span> | 1<span class="idiff right">5</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> pixelmed | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> gdcm | 13 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> ngs-sdk | 13 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> openslide | 13 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> nifti2dicom | 12 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> king | 11 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> nifti2dicom | 11 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> mia | 13 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> gdcm | 12 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> ngs-sdk | 12 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> openslide | 12 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> insighttoolkit4 | 10 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> jebl2 | 10 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> king | 10 | {typesetting,imaging} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> nifti2dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> orthanc-webviewer | 10 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> biojava-live | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> jellyfish1 | 9 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> melting | 9 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> phast | 8 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> anfo | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> beast-mcmc | 7 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> bio-tradis | 7 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> bitseq | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> adun.app | 9 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> jebl2 | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> nifti2dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> melting | 8 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> dicompyler | 7 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> ea-utils | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> ecopcr | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext"> embassy-domainatrix | 7 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> jellyfish1 | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> lagan | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> libncl | 7 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> ngs-sdk | 7 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> perm | 7 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> quorum | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> stacks | 7 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> treeview | 7 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> arden | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC55" class="line" lang="plaintext"> bart-view | 6 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> clonalorigin | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> elastix | 6 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> embassy-domalign | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> embassy-domsearch | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> lamarc | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> libpal-java | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> librg-utils-perl | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> phast | 7 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> anfo | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> beast-mcmc | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> bitseq | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> embassy-domainatrix | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> ghmm | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> libncl | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> libsbml | 6 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> mauve-aligner | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> obitools | 6 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> orthanc-dicomweb | 6 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> phyutility | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> prime-phylo | 6 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> runcircos-gui | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> saint | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> salmon | 6 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> sibsim4 | 6 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> soapsnp | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> spread-phy | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> staden | 6 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> assemblytics | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="plaintext"> brig | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> canu | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> clonalframeml | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> estscan | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> fsm-lite | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> hinge | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> ipig | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> jmodeltest | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> stacks | 6 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> treeview | 6 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> arden | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> bio-tradis | 5 | {bio,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> embassy-domalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> embassy-domsearch | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> lamarc | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> librg-utils-perl | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> openslide | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> p<span class="idiff left right">araclu</span> | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> p<span class="idiff left">roalign </span> | 5 | {bio,<span class="idiff right">bio-phylogeny}</span> | </span>
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> p<span class="idiff left">scan-chip </span> | 5 | {<span class="idiff right">bio} </span> | </span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> p<span class="idiff left right">erm </span> | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> p<span class="idiff left">hyutility</span> | 5 | {bio,<span class="idiff right">cloud} </span> | </span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> p<span class="idiff left">rime-phylo</span> | 5 | {<span class="idiff right">cloud,bio}</span> | </span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> q<span class="idiff left right">cumber</span> | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> r<span class="idiff left right">dp-alignment</span> | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> <span class="idiff left">rtax </span> | 5 | {bio<span class="idiff right">,cloud}</span> | </span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> q<span class="idiff left right">uorum </span> | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> r<span class="idiff left right">uncircos-gui</span> | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> <span class="idiff left">saint</span> | 5 | {bio<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="plaintext"> salmid | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> salmon | 5 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext"> samblaster | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> seqsero | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> soapaligner | 5 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> surankco | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> sibsim4 | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> soapsnp | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> spread-phy | 5 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> staden | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> tracetuner | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> tvc | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> yaha | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> zalign | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> <span class="idiff left">biomaj3-cli </span> | 4 | {<span class="idiff right">cloud}</span> | </span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> <span class="idiff left">assemblytics</span> | 4 | {<span class="idiff right">bio} </span> | </span>
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> blasr | 4 | {bio,bio-ngs} | </span>
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> busco | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> clonalframeml | 4 | {bio,covid-19} | </span>
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="plaintext"> delly | 4 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> fastml | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> estscan | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> gatb-core | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> <span class="idiff left right">getdata</span> | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> <span class="idiff left">libdivsufsort</span> | 4 | {bio<span class="idiff right">-dev}</span> | </span>
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> <span class="idiff left">librdp-taxonomy-tree-java</span> <span class="idiff">|</span> <span class="idiff">4 | {bio-dev}</span> <span class="idiff right"> </span> | </span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> <span class="idiff left">mhap </span> | 4 | {bio<span class="idiff right">,bio-ngs}</span> | </span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> m<span class="idiff left right">icrobegps </span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> <span class="idiff left right">hinge </span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> <span class="idiff left">ipig </span> | 4 | {bio<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> <span class="idiff left">jmodeltest</span> <span class="idiff"> </span> <span class="idiff">|</span> <span class="idiff right">4 | {bio-phylogeny,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> <span class="idiff left">libpal-java</span> | 4 | {bio<span class="idiff right">-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> m<span class="idiff left right">auve-aligner</span> | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> p<span class="idiff left">iler </span> | 4 | {<span class="idiff right">bio} </span> | </span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> p<span class="idiff left">lacnet </span> | 4 | {bio<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> <span class="idiff left right">rambo-k</span> | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> rdp-<span class="idiff left right">classifier</span> | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> <span class="idiff left">sga </span> | 4 | {bio<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> s<span class="idiff left right">paced </span> | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> s<span class="idiff left right">prai </span> | 4 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> su<span class="idiff left right">itename</span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> p<span class="idiff left">araclu</span> | 4 | {<span class="idiff right">cloud,bio}</span> | </span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> p<span class="idiff left">roalign</span> | 4 | {bio<span class="idiff right">,bio-phylogeny}</span> | </span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> <span class="idiff left right">qcumber</span> | 4 | {bio} | </span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> rdp-<span class="idiff left right">alignment </span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> <span class="idiff left">rtax</span> | 4 | {bio<span class="idiff right">,cloud}</span> | </span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> s<span class="idiff left right">eqsero</span> | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> s<span class="idiff left right">oapaligner</span> | 4 | {bio} | </span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> su<span class="idiff left right">rankco </span> | 4 | {bio} | </span>
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext"> atropos | 3 | {bio} | </span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> biomaj3-cli | 3 | {cloud} | </span>
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="plaintext"> blimps | 3 | {bio} | </span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> brig | 3 | {bio} | </span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> canu | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> cufflinks | 3 | {cloud,bio} | </span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> logol | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> fastml | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> libdivsufsort | 3 | {bio-dev} | </span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> mhap | 3 | {bio,bio-ngs} | </span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> microbegps | 3 | {bio} | </span>
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118
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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119
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> pbdagcon | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> piler | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> rambo-k | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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126
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="plaintext"> sift | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> sprai | 3 | {bio} | </span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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131
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130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> varscan | 3 | {bio,covid-19} | </span>
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132
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> bamkit | 2 | {covid-19,bio} | </span>
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133
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> cat-bat | 2 | {bio,covid-19} | </span>
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134
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> gifticlib | 2 | {imaging-dev} | </span>
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135
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> kmerresistance | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> <span class="idiff left right">metaphlan2</span> | 2 | {bio} | </span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> <span class="idiff left right">logol </span> | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> nanosv | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> nifticlib | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> orthanc-mysql | 2 | {imaging} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -155,9 +154,9 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000</td>
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154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="plaintext"> libctapimkt | 1 | {practice} | </span>
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155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="plaintext"> libmuscle | 1 | {bio-dev} | </span>
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156
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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159
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> opensurgsim | 1 | {imaging-dev} | </span>
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> orthanc-gdcm | 1 | {imaging} | </span>
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> parallel-fastq-dump | 1 | {covid-19} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -174,7 +173,6 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000</td>
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="plaintext"> svim | 1 | {bio} | </span>
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="plaintext"> thesias | 1 | {covid-19,bio} | </span>
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="plaintext"> tophat-recondition | 1 | {bio,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> varna | 1 | {bio} | </span>
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176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="plaintext"> vtk-dicom | 1 | {imaging-dev} | </span>
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179
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177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="plaintext"> yanagiba | 1 | {covid-19,bio} | </span>
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180
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="plaintext"> bambamc | 0 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -221,12 +219,13 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000</td>
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221
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> milib | 0 | {bio-dev,covid-19} | </span>
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> opensurgsim | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> plasmidid | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,6 +233,7 @@ Last-Update: Wed, 03 Mar 2021 01:42:04 +0000</td>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="plaintext"> sight | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="plaintext"> simpleitk | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="plaintext"> smrtanalysis | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"> varna | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> vienna-rna | 0 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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