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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4b19859eca7606c6b51e35cbfdee64a23c3e3621">4b19859e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-08T13:42:23+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
</a>
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/4b19859eca7606c6b51e35cbfdee64a23c3e3621#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 08 Mar 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">3</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Mon, 08 Mar 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">5</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">6</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 18<span class="idiff left right">8</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> orthanc | 90 | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> gdcm | 47 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 43 | {covid-19,his,practice,oncology,imaging,laboratory} | </span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> dicom3tools | 40 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | 39 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> dicomscope | 33 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> nifticlib | 25 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> dcm2niix | 24 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> dicomnifti | 22 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> orthanc-wsi | 42 | {covid-19,his,practice,oncology,imaging,laboratory} | </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> dicom3tools | 39 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | 38 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> dicomscope | 34 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> nifticlib | 24 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> dcm2niix | 23 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> htsjdk | 22 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 21 | {imaging<span class="idiff right">,covid-19}</span> | </span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> <span class="idiff left">minc-tools</span> | 20 | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> <span class="idiff left">odin </span> | <span class="idiff">20</span> | {imaging<span class="idiff right">,imaging-dev}</span> | </span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> <span class="idiff left">invesalius</span> | 1<span class="idiff">8</span> | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> <span class="idiff left">dicomnifti</span> | 21 | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 20 | {imaging<span class="idiff right">,covid-19}</span> | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> <span class="idiff left">minc-tools</span> | <span class="idiff">19</span> | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> <span class="idiff left">odin </span> | 1<span class="idiff">9</span> | {imaging<span class="idiff right">,imaging-dev}</span> | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> gnumed-server | 17 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> <span class="idiff left">plastimatch</span> | 1<span class="idiff right">7</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom </span> | 16 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right">pixelmed </span> | 15 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> <span class="idiff left right">mia </span> | 14 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> <span class="idiff left">openslide</span> | 1<span class="idiff right">4</span> | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 13 | {imaging<span class="idiff right">-dev}</span> | </span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> <span class="idiff left">invesalius </span> | 1<span class="idiff right">6</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> <span class="idiff left right">plastimatch</span> | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> <span class="idiff left right">vtk-dicom</span> | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> <span class="idiff left right">pixelmed</span> | 14 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> <span class="idiff left">mia </span> | 1<span class="idiff right">3</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> <span class="idiff left">openslide</span> | 13 | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> <span class="idiff left">king</span> | 11 | {imaging<span class="idiff right">,typesetting}</span> | </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> <span class="idiff left">nifti2dicom</span> | 1<span class="idiff">1</span> | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> <span class="idiff left">gdcm</span> | 11 | {imaging<span class="idiff right">-dev} </span> | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> <span class="idiff left">king </span> | 1<span class="idiff">0</span> | {imaging<span class="idiff right">,typesetting}</span> | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> nifti2dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> orthanc-webviewer | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> orthanc-webviewer | 9 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> nifti2dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> biojava-live | 7 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,19 +49,20 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> treeview | 6 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> anfo | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> arden | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="plaintext"> bart-view | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> beast-mcmc | 5 | {bio-phylogeny,bio} | </span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> bio-tradis | 5 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> busco | 5 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> clonalorigin | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> cufflinks | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext"> ecopcr | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> elastix | 5 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="plaintext"> embassy-domalign | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="plaintext"> getdata | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> ghmm | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext"> lamarc | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"> libminc | 5 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> libncl | 5 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> orthanc-dicomweb | 5 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="plaintext"> perm | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> phyutility | 5 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="plaintext"> pymia | 5 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -79,10 +79,10 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"> yaha | 5 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> zalign | 5 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"> assemblytics | 4 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> bart-view | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext"> biomaj3-cli | 4 | {cloud} | </span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> blasr | 4 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> clonalframeml | 4 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> elastix | 4 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext"> embassy-domsearch | 4 | {bio,cloud} | </span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext"> estscan | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="plaintext"> fsm-lite | 4 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -93,7 +93,6 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> openslide | 4 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> orthanc-dicomweb | 4 | {imaging,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> paraclu | 4 | {cloud,bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> piler | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> prime-phylo | 4 | {bio,cloud} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -117,6 +116,7 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> librg-utils-perl | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> mhap | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> placnet | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -132,7 +132,7 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> logol | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="plaintext"> nanosv | 2 | {bio,covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="plaintext"> nifticlib | 2 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> orthanc-<span class="idiff left right">postgresql</span> | 2 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> orthanc-<span class="idiff left right">mysql </span> | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> oscar | 2 | {tools,practice,data} | </span>
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> pbdagcon | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="plaintext"> plasmidseeker | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -158,7 +158,6 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> orthanc-gdcm | 1 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> orthanc-mysql | 1 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> parallel-fastq-dump | 1 | {covid-19} | </span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="plaintext"> pigx-rnaseq | 1 | {bio,covid-19} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -224,8 +223,8 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> plasmidid | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio-dev,bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> resfinder-db | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="plaintext"> sbmltoolbox | 0 | {bio-dev} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -237,5 +236,5 @@ Last-Update: Mon, 08 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="plaintext"> vienna-rna | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC237" class="line" lang="plaintext"> xdffileio | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC238" class="line" lang="plaintext"> orthanc-python | -1 | {covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC240" class="line" lang="plaintext">(26<span class="idiff left right">7</span> rows)</span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">(26<span class="idiff left right">6</span> rows)</span>
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"></span></pre>
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