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<h3>
Nilesh Patra pushed to branch master
at <a href="https://salsa.debian.org/med-team/assembly-stats">Debian Med / assembly-stats</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/assembly-stats/-/commit/a6a51749d17938a0fa7b540b6e548f2ddd260716">a6a51749</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-03-10T00:16:57+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not forcefully compile tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/assembly-stats/-/commit/36ce001e02088f3bf1d02b4f4e0db77d45d3b54f">36ce001e</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-03-10T00:17:37+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use DEB_HOST_GNU_TYPE instead of DEB_BUILD_GNU_TYPE - using the latter is never right
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/assembly-stats/-/commit/2ebb24dcb97bd01a529028d8150681961148689f">2ebb24dc</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-03-10T00:23:46+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add debug flag
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/assembly-stats/-/commit/56153c72af84aaad6b5461792650a9050e6c5685">56153c72</a></strong>
<div>
<span>by Nilesh Patra</span>
<i>at 2021-03-10T00:44:08+05:30</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#e99a270af7928fb70e6d100d4777aeb521509966">
<span class="new-file">
+
debian/patches/add-debug-flag.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#eac287844529ce6dfbc54e8c3f10ed28d60f9c9f">
<span class="new-file">
+
debian/patches/do-not-test-forcefully.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/6a6aff1aec09b1b85d78877b2365173a80dd6c86...56153c72af84aaad6b5461792650a9050e6c5685#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">assembly-stats (1.0.1+ds-3) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team Upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * No publication found, Add conda-id</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> [ Nilesh Patra ]</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Do not forcefully compile tests (Closes: #984889)</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Use DEB_HOST_GNU_TYPE instead of DEB_BUILD_GNU_TYPE</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> (Closes: #984890)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> * Add debug flag</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> -- Nilesh Patra <nilesh@debian.org> Wed, 10 Mar 2021 00:39:38 +0530</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">assembly-stats (1.0.1+ds-2) unstable; urgency=medium</span>
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<td class="new_line diff-line-num" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<td class="new_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> * Rules-Requires-Root: no (routine-update)</span>
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<li id="e99a270af7928fb70e6d100d4777aeb521509966">
<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/6a6aff1aec09b1b85d78877b2365173a80dd6c86...56153c72af84aaad6b5461792650a9050e6c5685#e99a270af7928fb70e6d100d4777aeb521509966"><strong>debian/patches/add-debug-flag.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/CMakeLists.txt</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -1,7 +1,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> cmake_minimum_required (VERSION 2.6)</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> project (assembly-stats)</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> </span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-set (CMAKE_CXX_FLAGS "-Wall -O3 -pthread")</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+set (CMAKE_CXX_FLAGS "-Wall -g -O3 -pthread")</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> file(COPY test_files DESTINATION ${CMAKE_CURRENT_BINARY_DIR})</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> #add_subdirectory(gtest-1.7.0)</span></pre>
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<li id="eac287844529ce6dfbc54e8c3f10ed28d60f9c9f">
<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/6a6aff1aec09b1b85d78877b2365173a80dd6c86...56153c72af84aaad6b5461792650a9050e6c5685#eac287844529ce6dfbc54e8c3f10ed28d60f9c9f"><strong>debian/patches/do-not-test-forcefully.patch</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/CMakeLists.txt</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/CMakeLists.txt</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">@@ -5,11 +5,15 @@</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> file(COPY test_files DESTINATION ${CMAKE_CURRENT_BINARY_DIR})</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> #add_subdirectory(gtest-1.7.0)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-enable_testing()</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-include_directories(/usr/include/gtest)</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-add_executable(runUnitTests fasta_unittest.cpp fastq_unittest.cpp filetype_unittest.cpp stats_unittest.cpp)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-target_link_libraries(runUnitTests gtest gtest_main fasta fastq filetype stats)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-add_test(runUnitTests runUnitTests)</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+option(BUILD_TESTS "Parameter to enable/disable build time tests" ON)</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+if(BUILD_TESTS)</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ enable_testing()</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ include_directories(/usr/include/gtest)</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ add_executable(runUnitTests fasta_unittest.cpp fastq_unittest.cpp filetype_unittest.cpp stats_unittest.cpp)</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ target_link_libraries(runUnitTests gtest gtest_main fasta fastq filetype stats)</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ add_test(runUnitTests runUnitTests)</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+endif()</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> add_library(fasta fasta.cpp)</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> add_library(fastq fastq.cpp)</span></pre>
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<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/6a6aff1aec09b1b85d78877b2365173a80dd6c86...56153c72af84aaad6b5461792650a9050e6c5685#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">use_debian_packages_gtest.patch</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">do-not-test-forcefully.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">add-debug-flag.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/assembly-stats/-/compare/6a6aff1aec09b1b85d78877b2365173a80dd6c86...56153c72af84aaad6b5461792650a9050e6c5685#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,5 +11,8 @@ export DEB_BUILD_MAINT_OPTIONS=hardening=+all</td>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">%:</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dh $@</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> dh_auto_configure -- -DBUILD_TESTS=$(if $(filter nocheck,$(DEB_BUILD_OPTIONS)),OFF,ON)</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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14
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">override_dh_auto_install:</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> dh_install obj-$(DEB_<span class="idiff left right">BUILD</span>_GNU_TYPE)/assembly-stats usr/bin</span></pre>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> dh_install obj-$(DEB_<span class="idiff left right">HOST</span>_GNU_TYPE)/assembly-stats usr/bin</span></pre>
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