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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/community/helper-scripts">Debian Med / community / helper-scripts</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ff19cae13c1d42ec13f1106c462cce2788cce386">ff19cae1</a></strong>
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<span>by Andreas Tille</span>
<i>at 2021-03-10T13:42:21+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">automatic update
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#f6d55d24085decec06151dd27f30199089d856ca">
debian-med-tests.txt
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<li class="file-stats">
<a href="#2654e31016bcee9bbe05d462121706cc8ed368af">
outdated_med-packages.txt
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<h4>Changes:</h4>
<li id="f6d55d24085decec06151dd27f30199089d856ca">
<a href="https://salsa.debian.org/med-team/community/helper-scripts/-/commit/ff19cae13c1d42ec13f1106c462cce2788cce386#f6d55d24085decec06151dd27f30199089d856ca"><strong>debian-med-tests.txt</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 10 Mar 2021 <span class="idiff left">0</span>1:42:0<span class="idiff right">3</span> +0000</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Last-Update: Wed, 10 Mar 2021 1<span class="idiff left">3</span>:42:0<span class="idiff right">4</span> +0000</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> Source | Vote | Tasks | Tags </span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">-------------------------------+--------+-----------------------------------------------------+----------------------------------------------------------------------</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">1</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">2</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 46 | {<span class="idiff right">imaging-dev} </span> | </span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> <span class="idiff left">orthanc-wsi</span> | 45 | {<span class="idiff right">covid-19,his,practice,oncology,imaging,laboratory}</span> | </span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> dcmtk | 19<span class="idiff left right">3</span> | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> orthanc | 9<span class="idiff left right">1</span> | {covid-19,imaging,practice} | </span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> <span class="idiff left">orthanc-wsi</span> | 46 | {<span class="idiff right">covid-19,his,practice,oncology,imaging,laboratory}</span> | </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> <span class="idiff left">gdcm </span> | 45 | {<span class="idiff right">imaging-dev} </span> | </span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> dicom3tools | 41 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> amide | <span class="idiff left right">39</span> | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> amide | <span class="idiff left right">40</span> | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> dicomscope | 34 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> dcm2niix | 25 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> nifticlib | 25 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> <span class="idiff left">dicomnifti</span> | 2<span class="idiff">2</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> <span class="idiff left">htsjdk </span> | 2<span class="idiff">2</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> <span class="idiff left">htsjdk </span> | 2<span class="idiff">4</span> | {<span class="idiff right">bio-dev</span>} | </span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> <span class="idiff left">dicomnifti</span> | 2<span class="idiff">1</span> | {<span class="idiff right">imaging</span>} | </span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> gdcm | 21 | {imaging,covid-19} | </span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> odin | 21 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> minc-tools | 20 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> odin | 20 | {imaging,imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> gnumed-server | 17 | {covid-19,practice} | </span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> invesalius | 16 | {imaging} | </span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> openslide | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> plastimatch | 16 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> vtk-dicom | 16 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> openslide | 15 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> pixelmed | 15 | {imaging} | </span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> invesalius | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> mia | 14 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> adun.app | 11 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> gdcm | 11 | {imaging-dev} | </span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> <span class="idiff left">king </span> | 1<span class="idiff">0</span> | {imaging<span class="idiff right">,typesetting}</span> | </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> <span class="idiff left">nifti2dicom</span> | 1<span class="idiff">1</span> | {imaging<span class="idiff right">} </span> | </span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> nifti2dicom | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> orthanc-webviewer | 10 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> insighttoolkit4 | 9 | {imaging-dev} | </span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> king | 9 | {imaging,typesetting} | </span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ngs-sdk | 9 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> nifti2dicom | 9 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> dicompyler | 8 | {oncology} | </span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> jebl2 | 8 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> ngs-sdk | 8 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,6 +91,7 @@ Last-Update: Wed, 10 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="plaintext"> ipig | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="plaintext"> jmodeltest | 4 | {bio,bio-phylogeny} | </span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="plaintext"> libdivsufsort | 4 | {bio-dev} | </span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> librg-utils-perl | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext"> mauve-aligner | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext"> microbegps | 4 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"> ngs-sdk | 4 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -115,7 +116,6 @@ Last-Update: Wed, 10 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext"> hinge | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> libpal-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="plaintext"> librdp-taxonomy-tree-java | 3 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> librg-utils-perl | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> mhap | 3 | {bio-ngs,bio} | </span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="plaintext"> orthanc-postgresql | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> oscar | 3 | {tools,practice,data} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -123,6 +123,7 @@ Last-Update: Wed, 10 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> pscan-chip | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> rdp-classifier | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> sga | 3 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> sight | 3 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> spaced | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> sprai | 3 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> suitename | 3 | {bio} | </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -140,7 +141,6 @@ Last-Update: Wed, 10 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="plaintext"> sambamba | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="plaintext"> segemehl | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> sift | 2 | {bio} | </span>
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> sight | 2 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="plaintext"> skesa | 2 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="plaintext"> spaln | 2 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="plaintext"> trace2dbest | 2 | {bio} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -156,6 +156,7 @@ Last-Update: Wed, 10 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC156" class="line" lang="plaintext"> libmuscle | 1 | {bio-dev} | </span>
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="plaintext"> libvistaio | 1 | {imaging-dev} | </span>
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="plaintext"> metaphlan2 | 1 | {bio} | </span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> ncbi-vdb | 1 | {bio-dev} | </span>
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="plaintext"> opencfu | 1 | {laboratory} | </span>
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161
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="plaintext"> orthanc-gdcm | 1 | {imaging} | </span>
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162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="plaintext"> papyrus | 1 | {imaging-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -163,6 +164,7 @@ Last-Update: Wed, 10 Mar 2021 01:42:03 +0000</td>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="plaintext"> pigx-rnaseq | 1 | {bio,covid-19} | </span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="plaintext"> pilercr | 1 | {bio} | </span>
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="plaintext"> pique | 1 | {bio} | </span>
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> plasmidid | 1 | {covid-19,bio} | </span>
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168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="plaintext"> pplacer | 1 | {bio,bio-phylogeny,covid-19} | </span>
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169
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<pre style="margin: 0;"> <span id="LC169" class="line" lang="plaintext"> python-bcbio-gff | 1 | {bio-dev} | </span>
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="plaintext"> samtools-legacy | 1 | {bio-dev} | </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -217,13 +219,11 @@ Last-Update: Wed, 10 Mar 2021 01:42:03 +0000</td>
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="plaintext"> miaviewit | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="plaintext"> milib | 0 | {bio-dev,covid-19} | </span>
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="plaintext"> mssstest | 0 | {tools} | </span>
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext"> ncbi-vdb | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="plaintext"> nifticlib | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="plaintext"> opensurgsim | 0 | {imaging-dev} | </span>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="plaintext"> orthanc-imagej | 0 | {imaging} | </span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="plaintext"> pbcopper | 0 | {bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> pbseqlib | 0 | {bio-dev} | </span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> plasmidid | 0 | {covid-19,bio} | </span>
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="plaintext"> python-seqcluster | 0 | {covid-19,bio-dev} | </span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="plaintext"> python-seqcluster | 0 | {bio} | </span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="plaintext"> q2-sample-classifier | 0 | {bio-dev,bio} | </span>
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