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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/meme">Debian Med / meme</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/872818e0e12f02eea6eeae4c18c5a15518895f70">872818e0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:43:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Standards-Version: 4.5.1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/06e6e8f0da73c0af4fec5879ed26e07412575fbf">06e6e8f0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:43:49+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: debhelper-compat 13
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/c0f9cf83b6a67f529c5c333537e83489d68633df">c0f9cf83</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:43:53+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Drop useless get-orig-source target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/ca3f1cd971b31eb09d6fc7f542a4d27ce5f6b3d1">ca3f1cd9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:45:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/2839e9566d6db39c7a5bafe0297c9d42a1ccbec3">2839e956</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:45:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/b5c4308f81377d9ed965a27b9ce995677cf35ad8">b5c4308f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:50:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Do not parse d/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/b27261a07147df71d2e60717717a081caa71f616">b27261a0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:50:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Add salsa-ci file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/e949815efc46726c84d3a891f851ab0f6b989e59">e949815e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:50:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: Rules-Requires-Root: no
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/8e22e3a32bb625d23bff6dd261217b1235cea2ac">8e22e3a3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:50:05+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">routine-update: No tab in license text
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/9e8907af1b2e0605bb916fdabe0c62e71da77301">9e8907af</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:55:14+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Cleanup changelog, use Python3
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/f365ba173d7aaf81052cb2a84c13cc543058eaaf">f365ba17</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T10:56:34+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">There are no such files that are attempted to be saved here
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/meme/-/commit/e70d8a46a91d93b9ecb9c0a115f0deec1fb8c6c1">e70d8a46</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2021-03-24T11:02:35+01:00</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Trust dh_autoreconf to do the right thing
</pre>
</li>
</ul>
<h4>5 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#b1dbf22e88351ec0d5d1d1a7f53295504b480e61">
<span class="new-file">
+
debian/salsa-ci.yml
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/meme/-/compare/9e2bea97026962f8a3321130640e70fd4185060f...e70d8a46a91d93b9ecb9c0a115f0deec1fb8c6c1#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">meme (5.0.1.1-1) UNRELEASED; urgency=low</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #xxxxxx)</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> </span>
</pre>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="old_line diff-line-num old" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> * debian/control: Depends: ghostscript, imagemagick | graphicsmagick</span>
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<td class="old_line diff-line-num old" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> * TODO:</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> TODO:</span>
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<td class="new_line diff-line-num" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> - debian/copyright</span>
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<td class="old_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> - several manpages</span>
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<td class="old_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> - language extensions</span>
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<td class="old_line diff-line-num" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> - csh dependency</span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left">Thu, 16 Ap</span>r 202<span class="idiff">0</span> 1<span class="idiff">6:49:43</span> +0<span class="idiff right">2</span>00</span></pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> <span class="idiff left">Wed, 24 Ma</span>r 202<span class="idiff">1</span> 1<span class="idiff">0:50:08</span> +0<span class="idiff right">1</span>00</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/meme/-/compare/9e2bea97026962f8a3321130640e70fd4185060f...e70d8a46a91d93b9ecb9c0a115f0deec1fb8c6c1#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Source: meme</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Uploaders: Andreas Tille <tille@debian.org>,</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> H. Soon Gweon <soonio@gmail.com>,</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> Thorsten Alteholz <debian@alteholz.de></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Section: non-free/science</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">XS-Autobuild: no</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 12),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper-compat (= 13),</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libxslt1-dev,</span>
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11
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> python-all,</span>
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12
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> zlib1g-dev,</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> elinks,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> help2man,</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> ghostscript</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">0</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Standards-Version: 4.5.<span class="idiff left right">1</span></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/meme</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/meme.git</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Homepage: http://meme-suite.org/tools/meme</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Rules-Requires-Root: no</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Package: meme</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/meme/-/compare/9e2bea97026962f8a3321130640e70fd4185060f...e70d8a46a91d93b9ecb9c0a115f0deec1fb8c6c1#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,33 +6,33 @@ Source: http://meme-suite.org/doc/download.html?man_type=web</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Copyright: © 1994-2010 The Regents of the University of California. All Rights Reserved.</span>
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">License: non-free_for_commercial</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> *<span class="idiff left"> </span>Permission to use, copy, modify, and distribute any part of <span class="idiff right"> </span>*</span>
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<td class="new_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> *<span class="idiff left right"> </span>this software for educational, research and non-profit purposes,*</span>
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<td class="old_line diff-line-num old" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> *<span class="idiff left right"> </span>without fee, and without a written agreement is hereby granted, *</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> *<span class="idiff left"> </span>provided that the above copyright notice, this paragraph and <span class="idiff right"> </span>*</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> *<span class="idiff left"> </span>the following three paragraphs appear in all copies.<span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> *<span class="idiff left right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> *<span class="idiff left"> </span>Those desiring to incorporate this software into commercial <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> *<span class="idiff left"> </span>products or use for commercial purposes should contact the <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> *<span class="idiff left right"> </span>Technology Transfer Office, University of California, San Diego,*</span>
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<td class="old_line diff-line-num old" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> *<span class="idiff left"> </span>9500 Gilman Drive, La Jolla, California, 92093-0910, <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> *<span class="idiff left"> </span>Ph: (858) 534 5815.<span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> *<span class="idiff left right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> *<span class="idiff left"> </span>IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA BE LIABLE TO <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> *<span class="idiff left"> </span>ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> *<span class="idiff left"> </span>CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> *<span class="idiff left"> </span>THE USE OF THIS SOFTWARE, EVEN IF THE UNIVERSITY OF CALIFORNIA <span class="idiff right"> </span>*</span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> *<span class="idiff left"> </span>HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. <span class="idiff right"> </span>*</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> *<span class="idiff left right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> *<span class="idiff left right"> </span>THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE *</span>
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<td class="old_line diff-line-num old" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
28
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<td class="new_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> *<span class="idiff left"> </span>UNIVERSITY OF CALIFORNIA HAS NO OBLIGATIONS TO PROVIDE <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
29
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<td class="new_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> *<span class="idiff left right"> </span>MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. *</span>
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<td class="old_line diff-line-num old" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
30
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<td class="new_line diff-line-num old" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> *<span class="idiff left"> </span>THE UNIVERSITY OF CALIFORNIA MAKES NO REPRESENTATIONS AND <span class="idiff right"> </span>*</span>
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<td class="old_line diff-line-num old" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> *<span class="idiff left right"> </span>EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED, *</span>
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32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> *<span class="idiff left"> </span>INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF <span class="idiff right"> </span>*</span>
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33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> *<span class="idiff left"> </span>MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT <span class="idiff right"> </span>*</span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> *<span class="idiff left"> </span>THE USE OF THE MATERIAL WILL NOT INFRINGE ANY PATENT, <span class="idiff right"> </span>*</span>
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35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> *<span class="idiff left"> </span>TRADEMARK OR OTHER RIGHTS. <span class="idiff right"> </span>*</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> *<span class="idiff left"> </span>Permission to use, copy, modify, and distribute any part of <span class="idiff right"> </span>*</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> *<span class="idiff left right"> </span>this software for educational, research and non-profit purposes,*</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> *<span class="idiff left right"> </span>without fee, and without a written agreement is hereby granted, *</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> *<span class="idiff left"> </span>provided that the above copyright notice, this paragraph and <span class="idiff right"> </span>*</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> *<span class="idiff left"> </span>the following three paragraphs appear in all copies.<span class="idiff right"> </span>*</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> *<span class="idiff left right"> </span>*</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> *<span class="idiff left"> </span>Those desiring to incorporate this software into commercial <span class="idiff right"> </span>*</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> *<span class="idiff left"> </span>products or use for commercial purposes should contact the <span class="idiff right"> </span>*</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> *<span class="idiff left right"> </span>Technology Transfer Office, University of California, San Diego,*</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> *<span class="idiff left"> </span>9500 Gilman Drive, La Jolla, California, 92093-0910, <span class="idiff right"> </span>*</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> *<span class="idiff left"> </span>Ph: (858) 534 5815.<span class="idiff right"> </span>*</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> *<span class="idiff left right"> </span>*</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> *<span class="idiff left"> </span>IN NO EVENT SHALL THE UNIVERSITY OF CALIFORNIA BE LIABLE TO <span class="idiff right"> </span>*</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> *<span class="idiff left"> </span>ANY PARTY FOR DIRECT, INDIRECT, SPECIAL, INCIDENTAL, OR <span class="idiff right"> </span>*</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> *<span class="idiff left"> </span>CONSEQUENTIAL DAMAGES, INCLUDING LOST PROFITS, ARISING OUT OF <span class="idiff right"> </span>*</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> *<span class="idiff left"> </span>THE USE OF THIS SOFTWARE, EVEN IF THE UNIVERSITY OF CALIFORNIA <span class="idiff right"> </span>*</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> *<span class="idiff left"> </span>HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. <span class="idiff right"> </span>*</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> *<span class="idiff left right"> </span>*</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> *<span class="idiff left right"> </span>THE SOFTWARE PROVIDED HEREUNDER IS ON AN "AS IS" BASIS, AND THE *</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> *<span class="idiff left"> </span>UNIVERSITY OF CALIFORNIA HAS NO OBLIGATIONS TO PROVIDE <span class="idiff right"> </span>*</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> *<span class="idiff left right"> </span>MAINTENANCE, SUPPORT, UPDATES, ENHANCEMENTS, OR MODIFICATIONS. *</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> *<span class="idiff left"> </span>THE UNIVERSITY OF CALIFORNIA MAKES NO REPRESENTATIONS AND <span class="idiff right"> </span>*</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> *<span class="idiff left right"> </span>EXTENDS NO WARRANTIES OF ANY KIND, EITHER EXPRESSED OR IMPLIED, *</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> *<span class="idiff left"> </span>INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF <span class="idiff right"> </span>*</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> *<span class="idiff left"> </span>MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE, OR THAT <span class="idiff right"> </span>*</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> *<span class="idiff left"> </span>THE USE OF THE MATERIAL WILL NOT INFRINGE ANY PATENT, <span class="idiff right"> </span>*</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> *<span class="idiff left"> </span>TRADEMARK OR OTHER RIGHTS. <span class="idiff right"> </span>*</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext">Files: src/readseq src/ureadseq.[ch]</span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">Copyright: 1990 D. G. Gilbert, Biology Dept., Indiana University, Bloomington, in 47405</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/meme/-/compare/9e2bea97026962f8a3321130640e70fd4185060f...e70d8a46a91d93b9ecb9c0a115f0deec1fb8c6c1#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># debian/rules file for meme</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"># Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"># Thorsten Alteholz <debian@alteholz.de></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"># GPL</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">pkg := $(shell dpkg-parsechangelog | sed -n 's/^Source: //p')</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">version=$(shell dpkg-parsechangelog -ldebian/changelog | grep Version: | cut -f2 -d' ' | cut -f1 -d- )</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">mandir=$(CURDIR)/debian/$(pkg)/usr/share/man/man1/</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">include /usr/share/dpkg/default.mk</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">mandir=$(CURDIR)/debian/$(DEB_SOURCE)/usr/share/man/man1/</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">DBPATH=/var/lib/$(<span class="idiff left right">pkg</span>)</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">LOGPATH=/var/log/$(<span class="idiff left right">pkg</span>)</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">DBPATH=/var/lib/$(<span class="idiff left right">DEB_SOURCE</span>)</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">LOGPATH=/var/log/$(<span class="idiff left right">DEB_SOURCE</span>)</span>
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13
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"># Only needed for fixing brocken upstream build mechanism</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">PYTHON=/usr/bin/python</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">PYTHON=/usr/bin/python<span class="idiff left right">3</span></span>
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15
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"># PYTHONSUBDIR=$(<span class="idiff left right">pkg</span>)/</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"># PYTHONSUBDIR=$(<span class="idiff left right">DEB_SOURCE</span>)/</span>
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17
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"># if the Python modules should be put into a separate meme subdirectory you need to patch the following scripts</span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"># scripts/dreme.py.in</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"># scripts/fasta-hamming-enrich.py.in</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">PYTHONSUBDIR=</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"></span>
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">%:</span>
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23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> dh $@,python2</span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"></span>
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25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">override_dh_autoreconf:</span>
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26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> # save original configuration files to enable building twice in a row</span>
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27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> mkdir -p orig</span>
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28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> cp -a config orig/</span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> cp -a aclocal.m4 INSTALL configure orig/</span>
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30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> mkdir -p orig/website/html</span>
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31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> cp -a website/html/metameme-help-format.html orig/website/html</span>
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<td class="old_line diff-line-num old" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> cp -a website/html/metameme-intro.html orig/website/html</span>
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<td class="old_line diff-line-num old" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> cp -a website/html/cisml.pattern.html.xsl orig/website/html</span>
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34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> mkdir -p orig/src</span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> cp -a src/projrel.h orig/src</span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> cp -a src/dir.h orig/src</span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> #mkdir -p orig/etc</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext"> #cp -a etc/logging.conf orig/etc</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> for origfile in `find . -type f -name Makefile.in` ; do \</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> mkdir -p orig/`dirname $$origfile` ; \</span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> cp -a $${origfile} orig/`dirname $$origfile` ; \</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> done ;</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> dh_autoreconf</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> dh $@ --with python3</span>
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">override_dh_auto_configure:</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> ./configure --prefix=/usr --mandir=\$${prefix}/share/man --infodir=\$${prefix}/share/info \</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> --host=$(DEB_HOST_GNU_TYPE) --build=$(DEB_BUILD_GNU_TYPE) \</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> --sysconfdir=/etc/$(<span class="idiff left right">pkg</span>) \</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> --sysconfdir=/etc/$(<span class="idiff left right">DEB_SOURCE</span>) \</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> --with-logs=$(LOGPATH) \</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> --with-db=$(DBPATH) \</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> --with-python=/usr/bin/python</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,18 +32,18 @@ override_dh_auto_install:</td>
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56
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> #Sort out some funny locations used by upstream</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> mv debian/tmp/usr/doc/examples debian/tmp || true</span>
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59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> mkdir -p debian/tmp/usr/share/doc/$(<span class="idiff left">pkg</span>) ; mv debian/tmp/usr/doc/* debian/tmp/usr/share/doc/$(<span class="idiff right">pkg</span>)</span>
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60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> mv debian/tmp/etc/$(<span class="idiff left">pkg</span>)/meme.doc debian/tmp/usr/share/doc/$(<span class="idiff right">pkg</span>)</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> mkdir -p debian/tmp/usr/share/doc/$(<span class="idiff left">DEB_SOURCE</span>) ; mv debian/tmp/usr/doc/* debian/tmp/usr/share/doc/$(<span class="idiff right">DEB_SOURCE</span>)</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> mv debian/tmp/etc/$(<span class="idiff left">DEB_SOURCE</span>)/meme.doc debian/tmp/usr/share/doc/$(<span class="idiff right">DEB_SOURCE</span>)</span>
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61
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37
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> find ./* -print|grep STRGGTCAN.meme|xargs chmod 644</span>
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62
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> mkdir -p debian/tmp/usr/share/perl5/Meme</span>
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63
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39
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> cp website/scripts/*.pm debian/tmp/usr/share/perl5/Meme</span>
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64
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40
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> cp scripts/*.pm debian/tmp/usr/share/perl5/Meme</span>
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65
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> # *.py files are Python libraries</span>
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66
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> mkdir -p $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/share/pyshared/$(PYTHONSUBDIR)</span>
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67
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> mv $(CURDIR)/debian/tmp/usr/bin/*.py $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/share/pyshared/$(PYTHONSUBDIR)</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> mkdir -p $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/share/pyshared/$(PYTHONSUBDIR)</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> mv $(CURDIR)/debian/tmp/usr/bin/*.py $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/share/pyshared/$(PYTHONSUBDIR)</span>
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68
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44
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> # fix insufficient replacement procedure of @WHICHPYTHON@</span>
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69
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45
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> for pyfile in sequence.py hypergeometric.py ; do \</span>
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70
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> sed -i -e 's% *@WHICHPYTHON@%$(PYTHON)%' $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/share/pyshared/$(PYTHONSUBDIR)$${pyfile} ; \</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> sed -i -e 's% *@WHICHPYTHON@%$(PYTHON)%' $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/share/pyshared/$(PYTHONSUBDIR)$${pyfile} ; \</span>
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71
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47
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> done</span>
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72
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48
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> dh_install -v --sourcedir=debian/tmp</span>
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73
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49
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="53" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -77,20 +53,20 @@ override_dh_installman:</td>
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77
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53
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="plaintext"> if head -n 1 $${var} | grep -q '^#!/usr/bin/perl' ; then pod2man $${var} > $(mandir)/`basename $${var}`.1 ; fi ; \</span>
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78
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54
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> done</span>
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79
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55
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="plaintext"> help2man --no-info --help-option="''" --no-discard-stderr \</span>
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80
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> --name='Average Motif Affinity' --version-string="$(<span class="idiff left right">version</span>)" \</span>
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81
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/bin/ama > $(mandir)/ama.1</span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> --name='Average Motif Affinity' --version-string="$(<span class="idiff left right">DEB_VERSION_UPSTREAM</span>)" \</span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/bin/ama > $(mandir)/ama.1</span>
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82
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<td class="new_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
58
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> help2man --no-info --help-option="''" --no-discard-stderr \</span>
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<td class="old_line diff-line-num old" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
83
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<td class="new_line diff-line-num old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> --name='Analysis of Motif Enrichment' --version-string="$(<span class="idiff left right">version</span>)" \</span>
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<td class="old_line diff-line-num old" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
84
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<td class="new_line diff-line-num old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/bin/ame > $(mandir)/ame.1</span>
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<td class="new_line diff-line-num new" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> --name='Analysis of Motif Enrichment' --version-string="$(<span class="idiff left right">DEB_VERSION_UPSTREAM</span>)" \</span>
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<td class="new_line diff-line-num new" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/bin/ame > $(mandir)/ame.1</span>
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<td class="old_line diff-line-num" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
85
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<td class="new_line diff-line-num" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="plaintext"> help2man --no-info --help-option="''" --no-discard-stderr \</span>
</pre>
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<td class="old_line diff-line-num old" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
86
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<td class="new_line diff-line-num old" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> --name='Build a linear hidden Markov model (HMM) from motif' --version-string="$(<span class="idiff left right">version</span>)" \</span>
</pre>
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<td class="old_line diff-line-num old" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
87
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<td class="new_line diff-line-num old" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/bin/beadstring > $(mandir)/beadstring.1</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> --name='Build a linear hidden Markov model (HMM) from motif' --version-string="$(<span class="idiff left right">DEB_VERSION_UPSTREAM</span>)" \</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/bin/beadstring > $(mandir)/beadstring.1</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
88
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<td class="new_line diff-line-num" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
64
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext"> help2man --no-info --help-option="''" --no-discard-stderr \</span>
</pre>
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<td class="old_line diff-line-num old" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
89
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<td class="new_line diff-line-num old" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> --name='Evaluate if motifs are locally enriched in a set of sequences' --version-string="$(<span class="idiff left right">version</span>)" \</span>
</pre>
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90
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<td class="new_line diff-line-num old" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/bin/centrimo > $(mandir)/centrimo.1</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> --name='Evaluate if motifs are locally enriched in a set of sequences' --version-string="$(<span class="idiff left right">DEB_VERSION_UPSTREAM</span>)" \</span>
</pre>
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<td class="new_line diff-line-num new" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/bin/centrimo > $(mandir)/centrimo.1</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<td class="new_line diff-line-num" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="plaintext"> help2man --no-info --help-option="''" --no-discard-stderr \</span>
</pre>
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<td class="old_line diff-line-num old" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
92
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<td class="new_line diff-line-num old" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> --name='Load all motifs within a MEME motif file and write to eps' --version-string="$(<span class="idiff left right">version</span>)" \</span>
</pre>
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<td class="old_line diff-line-num old" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
93
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<td class="new_line diff-line-num old" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">pkg</span>)/usr/bin/ceqlogo > $(mandir)/ceqlogo.1</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> --name='Load all motifs within a MEME motif file and write to eps' --version-string="$(<span class="idiff left right">DEB_VERSION_UPSTREAM</span>)" \</span>
</pre>
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<td class="old_line diff-line-num new" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> $(CURDIR)/debian/$(<span class="idiff left right">DEB_SOURCE</span>)/usr/bin/ceqlogo > $(mandir)/ceqlogo.1</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
94
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<td class="new_line diff-line-num" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
70
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"># Very dirty trick to drain information via help2man even if binary outputs to stderr</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
95
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<td class="new_line diff-line-num" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
71
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="plaintext"> debian/help2man-wrapper clustalw2fasta 'Converts a multiple alignment in clustalw format into a FASTA file'</span>
</pre>
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<td class="old_line diff-line-num" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
96
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<td class="new_line diff-line-num" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="plaintext"> debian/help2man-wrapper clustalw2phylip 'Converts a multiple alignment in clustalw format into a Phylip file'</span>
</pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -118,11 +94,9 @@ override_dh_clean:</td>
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118
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="plaintext"></span>
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119
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="plaintext">#XXX Disable testing temporarily to save time</span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="plaintext">override_dh_auto_test:</span>
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121
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> true</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> echo "FIXME: Skip build time test for the moment."</span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext">override_dh_compress:</span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> dh_compress -v -X.doc</span></pre>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext">get-orig-source:</span>
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> mkdir -p ../tarballs</span>
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> uscan --verbose --force-download --destdir=../tarballs</span></pre>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="nn" style="color: #555;">---</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="na" style="color: #008080;">include</span><span class="pi">:</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="pi">-</span> <span class="s" style="color: #d14;">https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml</span></span></pre>
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