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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
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Commits:
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<strong><a href="https://salsa.debian.org/med-team/bbmap/-/commit/59d349c919b7b98cd753fe4ca998f18aef855094">59d349c9</a></strong>
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<span>by Steffen Möller</span>
<i>at 2021-03-25T20:17:56+00:00</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update control - explained equivalence with BBTools</pre>
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<h4>1 changed file:</h4>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bbmap/-/commit/59d349c919b7b98cd753fe4ca998f18aef855094#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,16 +18,20 @@ Package: bbmap</td>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Depends: ${java:Depends},</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Provides: bbtools</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext">Recommends: pigz</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="mosel"><span class="n" style="color: #333;">Description</span><span class="p">:</span> <span class="n" style="color: #333;">short</span> <span class="nb" style="color: #0086b3;">read</span> <span class="n" style="color: #333;">aligner</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">bioinformatic</span> <span class="n" style="color: #333;">tools</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Description: BBTools genomic aligner and other tools for short sequences</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> The BBTools are a collection of of small programs to solve recurrent</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> tasks for the creative handling of short biological RNA/DNA sequences.</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> This suite may be best known for its mapper, which is also the name of</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> the project on sourceforge, but several tools have been added over time.</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> All tools are multi-threaded, implemented platform-independently in Java:</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> arbitrarily large genomes with millions of scaffolds. Handles Illumina,</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> PacBio, 454, and other reads; very high sensitivity and tolerant of</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> errors and numerous large indels.</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="mosel"> <span class="n" style="color: #333;">BBMap</span> <span class="n" style="color: #333;">is</span> <span class="n" style="color: #333;">multithreaded</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">well</span> <span class="k" style="font-weight: 600;">as</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">tools</span> <span class="n" style="color: #333;">bundled</span> <span class="n" style="color: #333;">into</span> <span class="n" style="color: #333;">this</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="mosel"> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">instance</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="mosel"> <span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> BBNorm: Kmer-based error-correction and normalization tool.</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"> Dedupe: Simplifies assemblies by removing duplicate or contained</span>
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